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Search of human proteins with 113423308
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens] 358 1e-99
gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens] 358 1e-99
gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens] 357 4e-99
gi|169217399 PREDICTED: hypothetical protein [Homo sapiens] 157 3e-39
gi|89061367 PREDICTED: hypothetical protein [Homo sapiens] 157 3e-39
gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo ... 157 3e-39
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 34 0.072
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|4826651 hypothetical protein LOC755 [Homo sapiens] 32 0.27
gi|4885261 growth differentiation factor 9 precursor [Homo sapiens] 31 0.61
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 1.0
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 30 1.4
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 30 1.4
gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens] 30 1.4
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 28 3.0
gi|239754558 PREDICTED: similar to hCG1779533 [Homo sapiens] 28 3.0
gi|239743151 PREDICTED: similar to hCG1779533 [Homo sapiens] 28 3.0
gi|239508809 PREDICTED: similar to hCG1779533 [Homo sapiens] 28 3.0
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 28 4.0
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 28 4.0
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 28 4.0
gi|239754546 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|239749111 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|239743140 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|239508798 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens] 28 4.0
gi|40068065 hypothetical protein LOC54058 [Homo sapiens] 28 4.0
gi|38569398 integrin, alpha 10 precursor [Homo sapiens] 28 4.0
>gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 358 bits (919), Expect = 1e-99
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH
Sbjct: 1 MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
Query: 61 ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP
Sbjct: 61 ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
Query: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA
Sbjct: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
>gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 358 bits (919), Expect = 1e-99
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH
Sbjct: 1 MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
Query: 61 ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP
Sbjct: 61 ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
Query: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA
Sbjct: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
>gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 357 bits (915), Expect = 4e-99
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMP+HCRLPRCAFRRPPRASRHHRQGH
Sbjct: 1 MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPKHCRLPRCAFRRPPRASRHHRQGH 60
Query: 61 ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP
Sbjct: 61 ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
Query: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA
Sbjct: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
>gi|169217399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 157 bits (398), Expect = 3e-39
Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)
Query: 1 MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
MPARLQA PLQ A IG LSHS PAA LLS S PEHC PRC F R PR S H RQG
Sbjct: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
Query: 60 HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
HALDH GAALLLS +ARG HPL RLR LW SIPPTLQGFPRL++SQASTTS L
Sbjct: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
Query: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
C P G P P +L +PP AA+G
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
>gi|89061367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 157 bits (398), Expect = 3e-39
Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)
Query: 1 MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
MPARLQA PLQ A IG LSHS PAA LLS S PEHC PRC F R PR S H RQG
Sbjct: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
Query: 60 HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
HALDH GAALLLS +ARG HPL RLR LW SIPPTLQGFPRL++SQASTTS L
Sbjct: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
Query: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
C P G P P +L +PP AA+G
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
>gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo
sapiens]
Length = 160
Score = 157 bits (398), Expect = 3e-39
Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)
Query: 1 MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
MPARLQA PLQ A IG LSHS PAA LLS S PEHC PRC F R PR S H RQG
Sbjct: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
Query: 60 HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
HALDH GAALLLS +ARG HPL RLR LW SIPPTLQGFPRL++SQASTTS L
Sbjct: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
Query: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
C P G P P +L +PP AA+G
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 33.9 bits (76), Expect = 0.072
Identities = 40/132 (30%), Positives = 46/132 (34%), Gaps = 7/132 (5%)
Query: 42 PRCAFRRPPRASRHHRQGHALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPR 101
P C F + + R H D RG A G+ G R R A P R
Sbjct: 128 PPCCFPASQQITNTERS-HGGDGRGVARASLGDKAGAGRAGRGR---PAQSPAEADAAAR 183
Query: 102 LLSSQASTTSDL--FRTVCAPRRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLT 159
S +S L A R GPT PP L +G P+RP APS L
Sbjct: 184 ASKSLKLLSSALPPHLRPAAKTRAVAGPTAKESPPALRTVGDGPRPGPKRPD-PAPSRLP 242
Query: 160 HPELLGLLRAEP 171
P G LR P
Sbjct: 243 PPPHAGALRGPP 254
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 32.0 bits (71), Expect = 0.27
Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 21 PLSHSPAAGLLSHSMPE------------HCRLPR-----CAFRRPP---RASRHHRQGH 60
PL S A SHS P H R PR C R P AS HHR +
Sbjct: 56 PLPGSLGARSRSHSGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRY 115
Query: 61 ALDHR----GAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSS--QASTTSDLF 114
L R GAA S LPR R+ S PP +G P L +S A + L
Sbjct: 116 HLRRRPQPHGAASSCS--------LPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167
Query: 115 RTVCAPRRQGPG 126
R A R+GPG
Sbjct: 168 RGGAASWRRGPG 179
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 32.0 bits (71), Expect = 0.27
Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 21 PLSHSPAAGLLSHSMPE------------HCRLPR-----CAFRRPP---RASRHHRQGH 60
PL S A SHS P H R PR C R P AS HHR +
Sbjct: 56 PLPGSLGARSRSHSGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRY 115
Query: 61 ALDHR----GAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSS--QASTTSDLF 114
L R GAA S LPR R+ S PP +G P L +S A + L
Sbjct: 116 HLRRRPQPHGAASSCS--------LPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167
Query: 115 RTVCAPRRQGPG 126
R A R+GPG
Sbjct: 168 RGGAASWRRGPG 179
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 32.0 bits (71), Expect = 0.27
Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 21 PLSHSPAAGLLSHSMPE------------HCRLPR-----CAFRRPP---RASRHHRQGH 60
PL S A SHS P H R PR C R P AS HHR +
Sbjct: 56 PLPGSLGARSRSHSGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRY 115
Query: 61 ALDHR----GAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSS--QASTTSDLF 114
L R GAA S LPR R+ S PP +G P L +S A + L
Sbjct: 116 HLRRRPQPHGAASSCS--------LPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167
Query: 115 RTVCAPRRQGPG 126
R A R+GPG
Sbjct: 168 RGGAASWRRGPG 179
>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
Length = 256
Score = 32.0 bits (71), Expect = 0.27
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 20/66 (30%)
Query: 81 LPRLRVLWAASIP-----------PTLQGFPRL--LSSQASTTSDLFRTV-------CAP 120
LPRLRVLW A P L+ PRL L +QA T +L R + AP
Sbjct: 86 LPRLRVLWLAENPCCGTSPHRYRMTVLRTLPRLQKLDNQAVTEEELSRALSEGEEITAAP 145
Query: 121 RRQGPG 126
R+G G
Sbjct: 146 EREGTG 151
>gi|4885261 growth differentiation factor 9 precursor [Homo sapiens]
Length = 454
Score = 30.8 bits (68), Expect = 0.61
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 65 RGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAPRRQG 124
RG + L ++R H + +L +A T +G P+ S T LF T C +Q
Sbjct: 73 RGGSPRLQPDSRALHYMKKLYKTYA-----TKEGIPKSNRSHLYNTVRLF-TPCTRHKQA 126
Query: 125 PGPTVLGYPP 134
PG V G P
Sbjct: 127 PGDQVTGILP 136
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 1.0
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 2 PARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGHA 61
P R AS P +R P P +SHS P R RR P S HR+G +
Sbjct: 610 PKRRTASPPPPPKRRASPSP----PPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSS 665
Query: 62 LDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQ 97
+ P PR R +S PP ++
Sbjct: 666 PSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVR 701
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 29.6 bits (65), Expect = 1.4
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 19/62 (30%)
Query: 7 ASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGHALDHRG 66
A+ PL RRAR G P SH PR + R P A+ HH + HR
Sbjct: 1215 AAGPLPRRRARCGCPRSHP--------------HRPRASHRTPAAAAPHHHR-----HRR 1255
Query: 67 AA 68
AA
Sbjct: 1256 AA 1257
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 29.6 bits (65), Expect = 1.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 2 PARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
P RLQ S P+ RR ++ P S S +GL + +P P R PP + R G
Sbjct: 1375 PLRLQRS-PVLKRRPKLEAPPSPSLGSGLGTEPLPPQPTEPSSPERSPPSPATDQRGG 1431
>gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]
Length = 241
Score = 29.6 bits (65), Expect = 1.4
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 37 EHCRLPRCAFRRP-PRASRHHRQGHALDHRGAALL--LSGEARGFHPLPRLRVLWAASIP 93
+ R P F P PR R + + +LL L+ A H LPR VLWA P
Sbjct: 153 QRLRSPTAPFTSPLPRGKRRAMEAQ-MQSEALSLLSNLADLANAVHWLPR-GVLWAGRFP 210
Query: 94 PTLQGFPRLLSS 105
P L G +SS
Sbjct: 211 PWLVGLMGTISS 222
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 125 PGPTVLGYPPVLLLAAEG-LFLFPRRPSCKAPSCLTHP 161
PGP PP ++ +G +F P RP CK P HP
Sbjct: 937 PGPPGPPGPPGAVINIKGAIFPIPVRPHCKMPVDTAHP 974
>gi|239754558 PREDICTED: similar to hCG1779533 [Homo sapiens]
Length = 212
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 161 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPCL 201
>gi|239743151 PREDICTED: similar to hCG1779533 [Homo sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 162 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPCL 202
>gi|239508809 PREDICTED: similar to hCG1779533 [Homo sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 162 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPCL 202
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 28.1 bits (61), Expect = 4.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 13 GRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRH-------HRQGHALDHR 65
G+ +G P + P A L H LP+ P + R HRQ H L+ R
Sbjct: 383 GKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDR 442
Query: 66 GA 67
G+
Sbjct: 443 GS 444
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
Length = 1113
Score = 28.1 bits (61), Expect = 4.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 13 GRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRH-------HRQGHALDHR 65
G+ +G P + P A L H LP+ P + R HRQ H L+ R
Sbjct: 332 GKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDR 391
Query: 66 GA 67
G+
Sbjct: 392 GS 393
>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
Length = 1163
Score = 28.1 bits (61), Expect = 4.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 13 GRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRH-------HRQGHALDHR 65
G+ +G P + P A L H LP+ P + R HRQ H L+ R
Sbjct: 382 GKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDR 441
Query: 66 GA 67
G+
Sbjct: 442 GS 443
>gi|239754546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143
>gi|239749111 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143
>gi|239743140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143
>gi|239508798 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
L F +LL +Q S LFR R PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143
>gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens]
Length = 428
Score = 28.1 bits (61), Expect = 4.0
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 64 HRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGF--------PRLLSSQASTTSDLFR 115
HR + SG AR HP L + +P T + P L+ Q DL
Sbjct: 353 HRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQ-DPLKDLVS 411
Query: 116 TVCAPRRQGPGPT 128
C P Q PGP+
Sbjct: 412 LACDPASQQPGPS 424
>gi|40068065 hypothetical protein LOC54058 [Homo sapiens]
Length = 322
Score = 28.1 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 40 RLPRCAFRRPPRASRHHRQGHALDHRGAALLL 71
R+PR A R P HH HA+ GAA +L
Sbjct: 279 RVPRAARPRLPAVHHHHHHHHAVWPPGAATVL 310
>gi|38569398 integrin, alpha 10 precursor [Homo sapiens]
Length = 1167
Score = 28.1 bits (61), Expect = 4.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 64 HRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSD 112
H+GA L G G P P R+ AAS+P L F R + + D
Sbjct: 577 HQGALYLYHGTQSGVRPHPAQRIA-AASMPHALSYFGRSVDGRLDLDGD 624
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,811,026
Number of Sequences: 37866
Number of extensions: 470225
Number of successful extensions: 1562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 46
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.