Guide to the Human Genome
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Search of human proteins with 113423308

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens]          358   1e-99
gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]          358   1e-99
gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens]          357   4e-99
gi|169217399 PREDICTED: hypothetical protein [Homo sapiens]           157   3e-39
gi|89061367 PREDICTED: hypothetical protein [Homo sapiens]            157   3e-39
gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo ...   157   3e-39
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ...    34   0.072
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]            32   0.27 
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]            32   0.27 
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]            32   0.27 
gi|4826651 hypothetical protein LOC755 [Homo sapiens]                  32   0.27 
gi|4885261 growth differentiation factor 9 precursor [Homo sapiens]    31   0.61 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         30   1.0  
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    30   1.4  
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain...    30   1.4  
gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]      30   1.4  
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         28   3.0  
gi|239754558 PREDICTED: similar to hCG1779533 [Homo sapiens]           28   3.0  
gi|239743151 PREDICTED: similar to hCG1779533 [Homo sapiens]           28   3.0  
gi|239508809 PREDICTED: similar to hCG1779533 [Homo sapiens]           28   3.0  
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]       28   4.0  
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]     28   4.0  
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]     28   4.0  
gi|239754546 PREDICTED: hypothetical protein [Homo sapiens]            28   4.0  
gi|239749111 PREDICTED: hypothetical protein [Homo sapiens]            28   4.0  
gi|239743140 PREDICTED: hypothetical protein [Homo sapiens]            28   4.0  
gi|239508798 PREDICTED: hypothetical protein [Homo sapiens]            28   4.0  
gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens]                28   4.0  
gi|40068065 hypothetical protein LOC54058 [Homo sapiens]               28   4.0  
gi|38569398 integrin, alpha 10 precursor [Homo sapiens]                28   4.0  

>gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens]
          Length = 173

 Score =  358 bits (919), Expect = 1e-99
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
           MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH
Sbjct: 1   MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60

Query: 61  ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
           ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP
Sbjct: 61  ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120

Query: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
           RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA
Sbjct: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173


>gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]
          Length = 173

 Score =  358 bits (919), Expect = 1e-99
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
           MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH
Sbjct: 1   MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60

Query: 61  ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
           ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP
Sbjct: 61  ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120

Query: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
           RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA
Sbjct: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173


>gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens]
          Length = 173

 Score =  357 bits (915), Expect = 4e-99
 Identities = 172/173 (99%), Positives = 173/173 (100%)

Query: 1   MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGH 60
           MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMP+HCRLPRCAFRRPPRASRHHRQGH
Sbjct: 1   MPARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPKHCRLPRCAFRRPPRASRHHRQGH 60

Query: 61  ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120
           ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP
Sbjct: 61  ALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAP 120

Query: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173
           RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA
Sbjct: 121 RRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLTHPELLGLLRAEPPA 173


>gi|169217399 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  157 bits (398), Expect = 3e-39
 Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)

Query: 1   MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
           MPARLQA  PLQ   A IG  LSHS PAA LLS S PEHC  PRC F R PR S H RQG
Sbjct: 1   MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60

Query: 60  HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
           HALDH GAALLLS +ARG HPL RLR LW  SIPPTLQGFPRL++SQASTTS L      
Sbjct: 61  HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120

Query: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
                 C P   G    P P +L      +PP    AA+G
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160


>gi|89061367 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  157 bits (398), Expect = 3e-39
 Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)

Query: 1   MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
           MPARLQA  PLQ   A IG  LSHS PAA LLS S PEHC  PRC F R PR S H RQG
Sbjct: 1   MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60

Query: 60  HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
           HALDH GAALLLS +ARG HPL RLR LW  SIPPTLQGFPRL++SQASTTS L      
Sbjct: 61  HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120

Query: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
                 C P   G    P P +L      +PP    AA+G
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160


>gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo
           sapiens]
          Length = 160

 Score =  157 bits (398), Expect = 3e-39
 Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)

Query: 1   MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
           MPARLQA  PLQ   A IG  LSHS PAA LLS S PEHC  PRC F R PR S H RQG
Sbjct: 1   MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60

Query: 60  HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
           HALDH GAALLLS +ARG HPL RLR LW  SIPPTLQGFPRL++SQASTTS L      
Sbjct: 61  HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120

Query: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
                 C P   G    P P +L      +PP    AA+G
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160


>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
           sapiens]
          Length = 326

 Score = 33.9 bits (76), Expect = 0.072
 Identities = 40/132 (30%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 42  PRCAFRRPPRASRHHRQGHALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPR 101
           P C F    + +   R  H  D RG A    G+  G     R R    A  P       R
Sbjct: 128 PPCCFPASQQITNTERS-HGGDGRGVARASLGDKAGAGRAGRGR---PAQSPAEADAAAR 183

Query: 102 LLSSQASTTSDL--FRTVCAPRRQGPGPTVLGYPPVLLLAAEGLFLFPRRPSCKAPSCLT 159
              S    +S L       A  R   GPT    PP L    +G    P+RP   APS L 
Sbjct: 184 ASKSLKLLSSALPPHLRPAAKTRAVAGPTAKESPPALRTVGDGPRPGPKRPD-PAPSRLP 242

Query: 160 HPELLGLLRAEP 171
            P   G LR  P
Sbjct: 243 PPPHAGALRGPP 254


>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 34/132 (25%)

Query: 21  PLSHSPAAGLLSHSMPE------------HCRLPR-----CAFRRPP---RASRHHRQGH 60
           PL  S  A   SHS P             H R PR     C  R  P    AS HHR  +
Sbjct: 56  PLPGSLGARSRSHSGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRY 115

Query: 61  ALDHR----GAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSS--QASTTSDLF 114
            L  R    GAA   S        LPR R+    S PP  +G P L +S   A  +  L 
Sbjct: 116 HLRRRPQPHGAASSCS--------LPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167

Query: 115 RTVCAPRRQGPG 126
           R   A  R+GPG
Sbjct: 168 RGGAASWRRGPG 179


>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 34/132 (25%)

Query: 21  PLSHSPAAGLLSHSMPE------------HCRLPR-----CAFRRPP---RASRHHRQGH 60
           PL  S  A   SHS P             H R PR     C  R  P    AS HHR  +
Sbjct: 56  PLPGSLGARSRSHSGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRY 115

Query: 61  ALDHR----GAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSS--QASTTSDLF 114
            L  R    GAA   S        LPR R+    S PP  +G P L +S   A  +  L 
Sbjct: 116 HLRRRPQPHGAASSCS--------LPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167

Query: 115 RTVCAPRRQGPG 126
           R   A  R+GPG
Sbjct: 168 RGGAASWRRGPG 179


>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 34/132 (25%)

Query: 21  PLSHSPAAGLLSHSMPE------------HCRLPR-----CAFRRPP---RASRHHRQGH 60
           PL  S  A   SHS P             H R PR     C  R  P    AS HHR  +
Sbjct: 56  PLPGSLGARSRSHSGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRY 115

Query: 61  ALDHR----GAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSS--QASTTSDLF 114
            L  R    GAA   S        LPR R+    S PP  +G P L +S   A  +  L 
Sbjct: 116 HLRRRPQPHGAASSCS--------LPRCRLCPERSAPPRRRGPPPLPTSCHWARRSCALR 167

Query: 115 RTVCAPRRQGPG 126
           R   A  R+GPG
Sbjct: 168 RGGAASWRRGPG 179


>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
          Length = 256

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 20/66 (30%)

Query: 81  LPRLRVLWAASIP-----------PTLQGFPRL--LSSQASTTSDLFRTV-------CAP 120
           LPRLRVLW A  P             L+  PRL  L +QA T  +L R +        AP
Sbjct: 86  LPRLRVLWLAENPCCGTSPHRYRMTVLRTLPRLQKLDNQAVTEEELSRALSEGEEITAAP 145

Query: 121 RRQGPG 126
            R+G G
Sbjct: 146 EREGTG 151


>gi|4885261 growth differentiation factor 9 precursor [Homo sapiens]
          Length = 454

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 65  RGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFRTVCAPRRQG 124
           RG +  L  ++R  H + +L   +A     T +G P+   S    T  LF T C   +Q 
Sbjct: 73  RGGSPRLQPDSRALHYMKKLYKTYA-----TKEGIPKSNRSHLYNTVRLF-TPCTRHKQA 126

Query: 125 PGPTVLGYPP 134
           PG  V G  P
Sbjct: 127 PGDQVTGILP 136


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 2   PARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGHA 61
           P R  AS P   +R     P    P    +SHS P   R      RR P  S  HR+G +
Sbjct: 610 PKRRTASPPPPPKRRASPSP----PPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSS 665

Query: 62  LDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQ 97
                         +   P PR R    +S PP ++
Sbjct: 666 PSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVR 701


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 19/62 (30%)

Query: 7    ASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQGHALDHRG 66
            A+ PL  RRAR G P SH                 PR + R P  A+ HH +     HR 
Sbjct: 1215 AAGPLPRRRARCGCPRSHP--------------HRPRASHRTPAAAAPHHHR-----HRR 1255

Query: 67   AA 68
            AA
Sbjct: 1256 AA 1257


>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
            proline-rich containing [Homo sapiens]
          Length = 1435

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2    PARLQASLPLQGRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
            P RLQ S P+  RR ++  P S S  +GL +  +P     P    R PP  +   R G
Sbjct: 1375 PLRLQRS-PVLKRRPKLEAPPSPSLGSGLGTEPLPPQPTEPSSPERSPPSPATDQRGG 1431


>gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]
          Length = 241

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 37  EHCRLPRCAFRRP-PRASRHHRQGHALDHRGAALL--LSGEARGFHPLPRLRVLWAASIP 93
           +  R P   F  P PR  R   +   +     +LL  L+  A   H LPR  VLWA   P
Sbjct: 153 QRLRSPTAPFTSPLPRGKRRAMEAQ-MQSEALSLLSNLADLANAVHWLPR-GVLWAGRFP 210

Query: 94  PTLQGFPRLLSS 105
           P L G    +SS
Sbjct: 211 PWLVGLMGTISS 222


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 125 PGPTVLGYPPVLLLAAEG-LFLFPRRPSCKAPSCLTHP 161
           PGP     PP  ++  +G +F  P RP CK P    HP
Sbjct: 937 PGPPGPPGPPGAVINIKGAIFPIPVRPHCKMPVDTAHP 974


>gi|239754558 PREDICTED: similar to hCG1779533 [Homo sapiens]
          Length = 212

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 161 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPCL 201


>gi|239743151 PREDICTED: similar to hCG1779533 [Homo sapiens]
          Length = 213

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 162 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPCL 202


>gi|239508809 PREDICTED: similar to hCG1779533 [Homo sapiens]
          Length = 213

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 162 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPCL 202


>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
          Length = 1164

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 13  GRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRH-------HRQGHALDHR 65
           G+   +G P +  P A L       H  LP+     P +  R        HRQ H L+ R
Sbjct: 383 GKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDR 442

Query: 66  GA 67
           G+
Sbjct: 443 GS 444


>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
          Length = 1113

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 13  GRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRH-------HRQGHALDHR 65
           G+   +G P +  P A L       H  LP+     P +  R        HRQ H L+ R
Sbjct: 332 GKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDR 391

Query: 66  GA 67
           G+
Sbjct: 392 GS 393


>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
          Length = 1163

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 13  GRRARIGIPLSHSPAAGLLSHSMPEHCRLPRCAFRRPPRASRH-------HRQGHALDHR 65
           G+   +G P +  P A L       H  LP+     P +  R        HRQ H L+ R
Sbjct: 382 GKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDR 441

Query: 66  GA 67
           G+
Sbjct: 442 GS 443


>gi|239754546 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143


>gi|239749111 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143


>gi|239743140 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143


>gi|239508798 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 96  LQGFPRLLSSQASTTSDLFRTVCAPRRQGPGPTVLGYPPVL 136
           L  F +LL +Q    S LFR      R  PGPT + + P L
Sbjct: 103 LPTFQQLLHTQLLPPSGLFRPSSCLTRAFPGPTFVSWQPSL 143


>gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens]
          Length = 428

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 64  HRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGF--------PRLLSSQASTTSDLFR 115
           HR    + SG AR  HP   L     + +P T   +        P  L+ Q     DL  
Sbjct: 353 HRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQ-DPLKDLVS 411

Query: 116 TVCAPRRQGPGPT 128
             C P  Q PGP+
Sbjct: 412 LACDPASQQPGPS 424


>gi|40068065 hypothetical protein LOC54058 [Homo sapiens]
          Length = 322

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 40  RLPRCAFRRPPRASRHHRQGHALDHRGAALLL 71
           R+PR A  R P    HH   HA+   GAA +L
Sbjct: 279 RVPRAARPRLPAVHHHHHHHHAVWPPGAATVL 310


>gi|38569398 integrin, alpha 10 precursor [Homo sapiens]
          Length = 1167

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 64  HRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSD 112
           H+GA  L  G   G  P P  R+  AAS+P  L  F R +  +     D
Sbjct: 577 HQGALYLYHGTQSGVRPHPAQRIA-AASMPHALSYFGRSVDGRLDLDGD 624


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,811,026
Number of Sequences: 37866
Number of extensions: 470225
Number of successful extensions: 1562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 46
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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