Guide to the Human Genome
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Name: LOC727847 Sequence: fasta or formatted (173aa) NCBI GI: 113423308
Description:

PREDICTED: similar to hCG1984643

Not currently referenced in the text

Other entries for this name:
alt mRNA {173aa} PREDICTED: similar to hCG1984643
alt prot {173aa} PREDICTED: similar to hCG1984643
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         20           2
 C cysteine            2.9          5           1
 D aspartate           1.2          2           1
 E glutamate           2.9          5           1
 F phenylalanine       3.5          6           1
 G glycine             7.5         13           1
 H histidine           5.2          9           2
 I isoleucine          1.7          3           1
 K lysine              0.6          1           1
 L leucine            16.8         29           3
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline            13.9         24           2
 Q glutamine           3.5          6           1
 R arginine           12.7         22           2
 S serine              8.1         14           2
 T threonine           3.5          6           2
 V valine              2.3          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1984643 
LOC727847             1.000   PREDICTED: similar to hCG1984643 
LOC727847             0.997   PREDICTED: similar to hCG1984643 
LOC650262             0.396   PREDICTED: hypothetical protein 
LOC650262             0.396   PREDICTED: hypothetical protein 
LOC100288048          0.396   PREDICTED: hypothetical protein XP_002343909 
LOC100289949          0.027   PREDICTED: hypothetical protein XP_002346877 
LOC100132891          0.021   PREDICTED: hypothetical protein 
LOC100132891          0.021   PREDICTED: hypothetical protein 
LOC100132891          0.021   PREDICTED: hypothetical protein 
C21orf2               0.021   hypothetical protein LOC755 
GDF9                  0.018   growth differentiation factor 9 precursor 
SRRM1                 0.015   serine/arginine repetitive matrix 1 
GRIN2D                0.015   N-methyl-D-aspartate receptor subunit 2D precursor ...
RLTPR                 0.015   RGD motif, leucine rich repeats, tropomodulin domain...
PEX11G                0.015   peroxisomal biogenesis factor 11 gamma 
COL15A1               0.009   alpha 1 type XV collagen precursor 
LOC100131871          0.009   PREDICTED: similar to hCG1779533 
LOC100131871          0.009   PREDICTED: similar to hCG1779533 
LOC100131871          0.009   PREDICTED: similar to hCG1779533 
TSC1                  0.009   tuberous sclerosis 1 protein isoform 1 
TSC1                  0.009   tuberous sclerosis 1 protein isoform 4 
TSC1                  0.009   tuberous sclerosis 1 protein isoform 3 
LOC100129904          0.009   PREDICTED: hypothetical protein 
LOC100129904          0.009   PREDICTED: hypothetical protein 
LOC100129904          0.009   PREDICTED: hypothetical protein 
LOC100129904          0.009   PREDICTED: hypothetical protein 
NFIC                  0.009   nuclear factor I/C isoform 1 
C21orf58              0.009   hypothetical protein LOC54058 
ITGA10                0.009   integrin, alpha 10 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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