Guide to the Human Genome
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Name: LOC642521 Sequence: fasta or formatted (157aa) NCBI GI: 113422056
Description:

PREDICTED: similar to nuclear DNA-binding protein

Referenced in:

Nuclear Receptors

Other entries for this name:
alt mRNA [157aa] PREDICTED: similar to nuclear DNA-binding protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         18           2
 C cysteine            0.0          0           0
 D aspartate           5.1          8           1
 E glutamate           8.3         13           2
 F phenylalanine       2.5          4           1
 G glycine             3.8          6           1
 H histidine           1.9          3           1
 I isoleucine          4.5          7           1
 K lysine             10.8         17           3
 L leucine             7.6         12           2
 M methionine          3.8          6           2
 N asparagine          5.7          9           1
 P proline             3.2          5           1
 Q glutamine           3.2          5           1
 R arginine            5.7          9           1
 S serine              8.3         13           1
 T threonine           1.3          2           1
 V valine              7.6         12           1
 W tryptophan          1.3          2           1
 Y tyrosine            3.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to nuclear DNA-binding protein [... 
LOC642521             1.000   PREDICTED: similar to nuclear DNA-binding protein [...
LOC642538             0.853   PREDICTED: similar to hCG1791993 
LOC642538             0.853   PREDICTED: similar to hCG1791993 
LOC642538             0.846   PREDICTED: hypothetical protein LOC642538 
C1D                   0.796   nuclear DNA-binding protein 
C1D                   0.796   nuclear DNA-binding protein 
CCDC30                0.021   coiled-coil domain containing 30 
ABCA13                0.014   ATP binding cassette, sub-family A (ABC1), member 13...
FGFR1OP               0.011   FGFR1 oncogene partner isoform b 
FGFR1OP               0.011   FGFR1 oncogene partner isoform a 
UTRN                  0.011   utrophin 
CTNNA2                0.007   catenin, alpha 2 
PLS1                  0.007   plastin 1 
PLS1                  0.007   plastin 1 
CTNNA1                0.007   catenin, alpha 1 
SMC6                  0.007   SMC6 protein 
SMC6                  0.007   SMC6 protein 
SPTAN1                0.007   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.007   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
FILIP1L               0.007   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.007   filamin A interacting protein 1-like isoform 2 [Hom...
FILIP1L               0.007   filamin A interacting protein 1-like isoform 1 [Hom...
HADHA                 0.007   mitochondrial trifunctional protein, alpha subunit p...
ADPRHL2               0.007   ADP-ribosylhydrolase like 2 
SPTBN1                0.007   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.007   spectrin, beta, non-erythrocytic 1 isoform 1 
LMOD1                 0.007   leiomodin 1 (smooth muscle) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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