LOC642521 1217

Name: LOC642521	Sequence: fasta or formatted (157aa)		NCBI GI: 113422056
Description: PREDICTED: similar to nuclear DNA-binding protein		Referenced in: Nuclear Receptors
Other entries for this name: alt mRNA [157aa] PREDICTED: similar to nuclear DNA-binding protein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.5 18 2 C cysteine 0.0 0 0 D aspartate 5.1 8 1 E glutamate 8.3 13 2 F phenylalanine 2.5 4 1 G glycine 3.8 6 1 H histidine 1.9 3 1 I isoleucine 4.5 7 1 K lysine 10.8 17 3 L leucine 7.6 12 2 M methionine 3.8 6 2 N asparagine 5.7 9 1 P proline 3.2 5 1 Q glutamine 3.2 5 1 R arginine 5.7 9 1 S serine 8.3 13 1 T threonine 1.3 2 1 V valine 7.6 12 1 W tryptophan 1.3 2 1 Y tyrosine 3.8 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to nuclear DNA-binding protein [... LOC642521 1.000 PREDICTED: similar to nuclear DNA-binding protein [... LOC642538 0.853 PREDICTED: similar to hCG1791993 LOC642538 0.853 PREDICTED: similar to hCG1791993 LOC642538 0.846 PREDICTED: hypothetical protein LOC642538 C1D 0.796 nuclear DNA-binding protein C1D 0.796 nuclear DNA-binding protein CCDC30 0.021 coiled-coil domain containing 30 ABCA13 0.014 ATP binding cassette, sub-family A (ABC1), member 13... FGFR1OP 0.011 FGFR1 oncogene partner isoform b FGFR1OP 0.011 FGFR1 oncogene partner isoform a UTRN 0.011 utrophin CTNNA2 0.007 catenin, alpha 2 PLS1 0.007 plastin 1 PLS1 0.007 plastin 1 CTNNA1 0.007 catenin, alpha 1 SMC6 0.007 SMC6 protein SMC6 0.007 SMC6 protein SPTAN1 0.007 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... SPTAN1 0.007 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... FILIP1L 0.007 filamin A interacting protein 1-like isoform 3 [Hom... FILIP1L 0.007 filamin A interacting protein 1-like isoform 2 [Hom... FILIP1L 0.007 filamin A interacting protein 1-like isoform 1 [Hom... HADHA 0.007 mitochondrial trifunctional protein, alpha subunit p... ADPRHL2 0.007 ADP-ribosylhydrolase like 2 SPTBN1 0.007 spectrin, beta, non-erythrocytic 1 isoform 2 SPTBN1 0.007 spectrin, beta, non-erythrocytic 1 isoform 1 LMOD1 0.007 leiomodin 1 (smooth muscle) Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.