LOC642538 17878

Name: LOC642538	Sequence: fasta or formatted (142aa)		NCBI GI: 239744148
Description: PREDICTED: hypothetical protein LOC642538		Referenced in: Nuclear Receptors
Other entries for this name: alt prot [142aa] PREDICTED: similar to hCG1791993 alt prot [141aa] PREDICTED: similar to hCG1791993
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.2 13 2 C cysteine 0.0 0 0 D aspartate 5.6 8 1 E glutamate 8.5 12 2 F phenylalanine 2.1 3 1 G glycine 2.8 4 1 H histidine 2.1 3 1 I isoleucine 3.5 5 1 K lysine 11.3 16 3 L leucine 8.5 12 2 M methionine 4.9 7 2 N asparagine 6.3 9 1 P proline 4.2 6 1 Q glutamine 2.8 4 1 R arginine 4.9 7 1 S serine 7.0 10 1 T threonine 2.8 4 1 V valine 8.5 12 1 W tryptophan 1.4 2 1 Y tyrosine 3.5 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: hypothetical protein LOC642538 LOC642538 0.992 PREDICTED: similar to hCG1791993 LOC642538 0.988 PREDICTED: similar to hCG1791993 LOC642521 0.934 PREDICTED: similar to nuclear DNA-binding protein [... LOC642521 0.934 PREDICTED: similar to nuclear DNA-binding protein [... C1D 0.922 nuclear DNA-binding protein C1D 0.922 nuclear DNA-binding protein CCDC30 0.027 coiled-coil domain containing 30 ABCA13 0.016 ATP binding cassette, sub-family A (ABC1), member 13... UTRN 0.012 utrophin SMC6 0.012 SMC6 protein SMC6 0.012 SMC6 protein ADPRHL2 0.008 ADP-ribosylhydrolase like 2 KCNH3 0.008 potassium voltage-gated channel, subfamily H (eag-re... SMC5 0.004 SMC5 protein LMOD1 0.004 leiomodin 1 (smooth muscle) Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.