Guide to the Human Genome
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Name: C1D Sequence: fasta or formatted (141aa) NCBI GI: 27894373
Description:

nuclear DNA-binding protein

Referenced in:

Nuclear Receptors

Other entries for this name:
alt mRNA [141aa] nuclear DNA-binding protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         12           2
 C cysteine            0.0          0           0
 D aspartate           4.3          6           1
 E glutamate           9.9         14           2
 F phenylalanine       2.1          3           1
 G glycine             4.3          6           1
 H histidine           1.4          2           1
 I isoleucine          3.5          5           1
 K lysine             12.1         17           3
 L leucine             8.5         12           2
 M methionine          4.3          6           2
 N asparagine          6.4          9           1
 P proline             3.5          5           1
 Q glutamine           2.8          4           1
 R arginine            4.3          6           1
 S serine              7.8         11           1
 T threonine           2.8          4           1
 V valine              8.5         12           1
 W tryptophan          1.4          2           1
 Y tyrosine            3.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear DNA-binding protein 
C1D                   1.000   nuclear DNA-binding protein 
LOC642538             0.937   PREDICTED: similar to hCG1791993 
LOC642538             0.937   PREDICTED: similar to hCG1791993 
LOC642538             0.933   PREDICTED: hypothetical protein LOC642538 
LOC642521             0.890   PREDICTED: similar to nuclear DNA-binding protein [...
LOC642521             0.890   PREDICTED: similar to nuclear DNA-binding protein [...
CCDC30                0.035   coiled-coil domain containing 30 
SMC5                  0.020   SMC5 protein 
ADPRHL2               0.012   ADP-ribosylhydrolase like 2 
LMOD1                 0.012   leiomodin 1 (smooth muscle) 
RNF165                0.008   ring finger protein 165 
KCNH3                 0.008   potassium voltage-gated channel, subfamily H (eag-re...
ABCA13                0.008   ATP binding cassette, sub-family A (ABC1), member 13...
EZH1                  0.008   enhancer of zeste homolog 1 
CTNNA1                0.008   catenin, alpha 1 
CTNNA2                0.004   catenin, alpha 2 
SHPRH                 0.004   SNF2 histone linker PHD RING helicase isoform a [Ho...
SHPRH                 0.004   SNF2 histone linker PHD RING helicase isoform b [Hom...
SMC6                  0.004   SMC6 protein 
SMC6                  0.004   SMC6 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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