C1D 24615

Name: C1D	Sequence: fasta or formatted (141aa)		NCBI GI: 27894373
Description: nuclear DNA-binding protein		Referenced in: Nuclear Receptors
Other entries for this name: alt mRNA [141aa] nuclear DNA-binding protein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.5 12 2 C cysteine 0.0 0 0 D aspartate 4.3 6 1 E glutamate 9.9 14 2 F phenylalanine 2.1 3 1 G glycine 4.3 6 1 H histidine 1.4 2 1 I isoleucine 3.5 5 1 K lysine 12.1 17 3 L leucine 8.5 12 2 M methionine 4.3 6 2 N asparagine 6.4 9 1 P proline 3.5 5 1 Q glutamine 2.8 4 1 R arginine 4.3 6 1 S serine 7.8 11 1 T threonine 2.8 4 1 V valine 8.5 12 1 W tryptophan 1.4 2 1 Y tyrosine 3.5 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nuclear DNA-binding protein C1D 1.000 nuclear DNA-binding protein LOC642538 0.937 PREDICTED: similar to hCG1791993 LOC642538 0.937 PREDICTED: similar to hCG1791993 LOC642538 0.933 PREDICTED: hypothetical protein LOC642538 LOC642521 0.890 PREDICTED: similar to nuclear DNA-binding protein [... LOC642521 0.890 PREDICTED: similar to nuclear DNA-binding protein [... CCDC30 0.035 coiled-coil domain containing 30 SMC5 0.020 SMC5 protein ADPRHL2 0.012 ADP-ribosylhydrolase like 2 LMOD1 0.012 leiomodin 1 (smooth muscle) RNF165 0.008 ring finger protein 165 KCNH3 0.008 potassium voltage-gated channel, subfamily H (eag-re... ABCA13 0.008 ATP binding cassette, sub-family A (ABC1), member 13... EZH1 0.008 enhancer of zeste homolog 1 CTNNA1 0.008 catenin, alpha 1 CTNNA2 0.004 catenin, alpha 2 SHPRH 0.004 SNF2 histone linker PHD RING helicase isoform a [Ho... SHPRH 0.004 SNF2 histone linker PHD RING helicase isoform b [Hom... SMC6 0.004 SMC6 protein SMC6 0.004 SMC6 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.