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Search of human proteins with 20162566
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens] 396 e-111
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 61 4e-10
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 54 7e-08
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 50 1e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 50 1e-06
gi|4809279 annexin VII isoform 2 [Homo sapiens] 50 1e-06
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 49 2e-06
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 49 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 49 2e-06
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 49 3e-06
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 48 4e-06
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 48 4e-06
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 48 4e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 48 5e-06
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 48 5e-06
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 48 5e-06
gi|55956910 meningioma 1 [Homo sapiens] 47 7e-06
gi|4502111 annexin VII isoform 1 [Homo sapiens] 47 7e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 47 7e-06
gi|55956899 keratin 9 [Homo sapiens] 47 9e-06
gi|195972866 keratin 10 [Homo sapiens] 47 1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 1e-05
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 46 1e-05
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 46 1e-05
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 46 1e-05
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 46 1e-05
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 46 1e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 46 2e-05
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 45 3e-05
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 45 3e-05
>gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens]
Length = 179
Score = 396 bits (1018), Expect = e-111
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MQRQNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRP 60
MQRQNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRP
Sbjct: 1 MQRQNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRP 60
Query: 61 YGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTST 120
YGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTST
Sbjct: 61 YGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTST 120
Query: 121 PFGSGRVREKRMSNELENYFKPSMLEDPWAGLEPVSVVDISQQYSNTQTFTGKKGRYFC 179
PFGSGRVREKRMSNELENYFKPSMLEDPWAGLEPVSVVDISQQYSNTQTFTGKKGRYFC
Sbjct: 121 PFGSGRVREKRMSNELENYFKPSMLEDPWAGLEPVSVVDISQQYSNTQTFTGKKGRYFC 179
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 61.2 bits (147), Expect = 4e-10
Identities = 39/95 (41%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYG---PRSRPYGSS 64
PP YPGP G GS G P GGG P+P YG P PYG P P G+
Sbjct: 21 PPGSYYPGPPNSGGQYGS---GLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTP 77
Query: 65 HSPRHGGSFPGGRFGSPSPGGY----PGSYSRSPA 95
P +GG+ PGG +G P P Y PG Y + A
Sbjct: 78 GGP-YGGAAPGGPYGQPPPSSYGAQQPGLYGQGGA 111
Score = 47.4 bits (111), Expect = 7e-06
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSP----------RDGYGSPHHTPPYGPRS--RPYGS 63
PG G G+ PG P PP+ GYG P PYGP + PYG
Sbjct: 11 PGAAGQAPGAP----PGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGH 66
Query: 64 SHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF- 122
+ PGG +G +PGG G S G+QQ Y GQ P P + F
Sbjct: 67 PNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLY--GQGGAPPNVDPEAYSWFQ 124
Query: 123 -----GSGRVREKRMSNELEN 138
SG + K + L N
Sbjct: 125 SVDSDHSGYISMKELKQALVN 145
Score = 40.8 bits (94), Expect = 6e-04
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 28 RGTPGGGGPRPPSPRDGY--GSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGG 85
+G PG G P +P Y G P+ YG P G +GG PGG +G P+ GG
Sbjct: 8 QGCPGAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGGG-----YGGPAPGGPYGPPAGGG 62
Query: 86 -----YPGSY-SRSPAGSQQQFGYSPGQQQTHPQGSPRTST 120
PG + S +P G G +PG P G P S+
Sbjct: 63 PYGHPNPGMFPSGTPGGPYG--GAAPG----GPYGQPPPSS 97
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 53.9 bits (128), Expect = 7e-08
Identities = 42/118 (35%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 8 PPTPPY----PGPGGGGWGSGSSFRGTPGG---GGPRPPSPRDGYGSPHHTPPYG--PRS 58
PP PP P P GG G G P G G + SPR G P PP G P+
Sbjct: 50 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQG 109
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
P + P+ G PG G P+ GG +RSP G Q P Q+ +PQG P
Sbjct: 110 PPPQGGNKPQ-GPPPPGKPQGPPAQGGSKSQSARSPPGKPQG---PPQQEGNNPQGPP 163
Score = 45.1 bits (105), Expect = 3e-05
Identities = 35/122 (28%), Positives = 42/122 (34%), Gaps = 17/122 (13%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGT-----------PGGGGPRPPSPRDGYGSPHHTPPYG 55
+P PP PG G G R P GG P+ P P+ G P PP G
Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGG-NKPQGPPPPG 125
Query: 56 PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGS 115
P S P G+ P G P +P G G +P Q Q P G
Sbjct: 126 KPQGPPAQGGSKSQSARSPPGK-----PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ 180
Query: 116 PR 117
P+
Sbjct: 181 PQ 182
Score = 39.7 bits (91), Expect = 0.001
Identities = 40/126 (31%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 11 PPYPGPGGGGWGSG-----SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
P P P GG G +G P GG +P P G P PP G +SR
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKSR------ 88
Query: 66 SPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGSG 125
SPR S PG G P GG P G Q G P Q P G P+ G
Sbjct: 89 SPR---SPPGKPQGPPPQGG-------KPQGPPPQGGNKP--QGPPPPGKPQGPPAQGGS 136
Query: 126 RVREKR 131
+ + R
Sbjct: 137 KSQSAR 142
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 34 GGPRPPSPRDGYGSPHHTPPYG-PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSR 92
G P+ PSP+ G PP G P+ P + P+ G P G+ P P G R
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQ--GPPPPGKPQGPPPQGDKSRSPR 91
Query: 93 SPAGSQQQFGYSPGQQQTHPQGSP 116
SP G Q P Q PQG P
Sbjct: 92 SPPGKPQ----GPPPQGGKPQGPP 111
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 8 PPTPPYP-GPGGGGWGSGSSFRGTPG---------GGGPRPPSPRDGYGSPHHTPPYGPR 57
PP P P GP G S R PG G P+ P P G G+P P P
Sbjct: 121 PPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAG-GNPQQ-PQAPPA 178
Query: 58 SRPYGSSHSPRHG 70
+P G P+ G
Sbjct: 179 GQPQGPPRPPQGG 191
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 50.1 bits (118), Expect = 1e-06
Identities = 45/117 (38%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 23 SGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP----RHGGSFPGGRF 78
SGS RG PG G P P S R G PR+RP +S SP R GG P G+
Sbjct: 432 SGSG-RGAPGPG-PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGG--PEGKS 487
Query: 79 GSPSPGGYPGSY--SRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF-----GSGRVR 128
S SPG +P S+ SRSP+ S+ + S ++ P SP P G GR R
Sbjct: 488 SSRSPGPHPRSWSSSRSPSKSRSR---SAEKRPHSPSRSPSPKKPLSRDKDGEGRAR 541
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
R P+P GG GWGS G+ G P + P PR R ++ +
Sbjct: 298 RSPSPS----GGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAA 353
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYSR 92
P + P SPSP P S R
Sbjct: 354 P----TPPARGKESPSPRSAPSSQGR 375
Score = 27.7 bits (60), Expect = 5.5
Identities = 39/159 (24%), Positives = 49/159 (30%), Gaps = 39/159 (24%)
Query: 14 PGPGGGGWGSGSS-FRGTPGGGGPRPPSP-------------RDGYGSPHHTPPYGPRSR 59
PGP W S S + RP SP +DG G H+ R+R
Sbjct: 492 PGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRAR 551
Query: 60 PYGSSHSP-----RHGGSFPGGR-----------FGSPSPGGYPG---------SYSRSP 94
S+SP R SF R + PSP S+SRSP
Sbjct: 552 RRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSP 611
Query: 95 AGSQQQFGYSPGQQQTHPQGSPRTSTPFGSGRVREKRMS 133
+ YS T + + TP S R S
Sbjct: 612 SPGHSHGSYSSRSHGTRSRTRSPSRTPSPSYHSRSSSES 650
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 50.1 bits (118), Expect = 1e-06
Identities = 44/130 (33%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
PPTPP SG GG P PP+ G P P GP P G
Sbjct: 166 PPTPP---------SSGVPTTPPQAGGPPPPPAAVPG---PGPGPKQGPG--PGGPKGGK 211
Query: 68 RHGGSFPGGRFGSPSPGGYPGSYSR---SPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
GG PGG G +PGG+P R P G +Q + P Q H QG P P G
Sbjct: 212 MPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQ---HHPPYHQQHHQGPP----PGGP 264
Query: 125 GRVREKRMSN 134
G E+++S+
Sbjct: 265 GGRSEEKISD 274
Score = 30.8 bits (68), Expect = 0.65
Identities = 35/136 (25%), Positives = 38/136 (27%), Gaps = 34/136 (25%)
Query: 17 GGGGWGSGSSFRGTPGG----------------GGPRPPSP---------------RDGY 45
GGGG G FR P G GP+PP P
Sbjct: 21 GGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ 80
Query: 46 GSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSP 105
P H PP P+ P S P + PG PG S PA S P
Sbjct: 81 QPPPHQPPPHPQPHQQQQPPPPPQDSSKP---VVAQGPGPAPGVGSAPPASSSAPPATPP 137
Query: 106 GQQQTHPQGSPRTSTP 121
G T TP
Sbjct: 138 TSGAPPGSGPGPTPTP 153
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 49.7 bits (117), Expect = 1e-06
Identities = 53/183 (28%), Positives = 74/183 (40%), Gaps = 36/183 (19%)
Query: 9 PTPPYPGPGG----GGWGSGSSFRGTPG-GGGPRPPS--PRDGYGSPHHTPPYG----PR 57
P+ YPG GG GG+ + + G P GG P P P G+G P + P
Sbjct: 50 PSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGYPQPP 109
Query: 58 SRPYGSSHS--PRHGGSFPGGRFGSPSPGGYP--------GSYSRSPAGSQQQFGYS--P 105
S+ YG + P GG FPGG+ S PGG P S+S P S YS P
Sbjct: 110 SQSYGGGPAQVPLPGG-FPGGQMPSQYPGGQPTYPSQINTDSFSSYPVFSPVSLDYSSEP 168
Query: 106 GQQQTHPQGSPRTSTPFGSGRVREKRMSNELENYFKPSMLEDPWAGLEPVSVVDISQQYS 165
QG+ R + F + +R+ + + F G + ++VD+ S
Sbjct: 169 ATVTQVTQGTIRPAANFDA--IRDAEILRKAMKGF----------GTDEQAIVDVVANRS 216
Query: 166 NTQ 168
N Q
Sbjct: 217 NDQ 219
Score = 46.2 bits (108), Expect = 1e-05
Identities = 47/166 (28%), Positives = 62/166 (37%), Gaps = 27/166 (16%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
PP+ YP P G P GGG P P GY P G P G +P
Sbjct: 27 PPSGQYPYPSG----------FPPMGGGAYPQVPSSGYPGAGGYPAPGGYPAPGGYPGAP 76
Query: 68 RHGGS------FPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQT---HPQGSPRT 118
+ GG+ PG FG P PGG +S P Q +G P Q P G +
Sbjct: 77 QPGGAPSYPGVPPGQGFGVP-PGG--AGFSGYPQPPSQSYGGGPAQVPLPGGFPGGQMPS 133
Query: 119 STPFGSGRVREKRMSNELENY--FKPSMLEDPWAGLEPVSVVDISQ 162
P G + ++ +Y F P L+ EP +V ++Q
Sbjct: 134 QYPGGQPTYPSQINTDSFSSYPVFSPVSLD---YSSEPATVTQVTQ 176
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 26 SFRGTPGGGGPRPPSPRDGY---GSPHHTPPYGPRSRPYGSSHSPRHGGSFPG------- 75
S+ G P G P P GY G PP G PY S P GG++P
Sbjct: 2 SYPGYPPTGYP----PFPGYPPAGQESSFPPSG--QYPYPSGFPPMGGGAYPQVPSSGYP 55
Query: 76 GRFGSPSPGGY--PGSY--SRSPAGSQQQFGYSPGQQQTHPQG 114
G G P+PGGY PG Y + P G+ G PGQ P G
Sbjct: 56 GAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPG 98
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 49.3 bits (116), Expect = 2e-06
Identities = 46/151 (30%), Positives = 53/151 (35%), Gaps = 37/151 (24%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTP--PYGPRSRPYGSSH 65
PPT P PGP SG S PGG P P P G P+ TP P+ RPYG+
Sbjct: 76 PPTGPPPGPPAPFPPSGPSCP-PPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPT 134
Query: 66 SPRH-------------------GGSFPGGRFGSPSPGGY--------PGSYSRSPAGSQ 98
P GG +P PSPG Y PG+ P G+
Sbjct: 135 DPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTV 194
Query: 99 QQFGYSPGQQQTHPQGS-------PRTSTPF 122
+ P P GS P S PF
Sbjct: 195 PPGAWGPPAPYPAPTGSYPTPGLYPTPSNPF 225
Score = 46.6 bits (109), Expect = 1e-05
Identities = 36/108 (33%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 9 PTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPR 68
PT P G WGS SS PG GG + P+P Y SP P P P + P
Sbjct: 133 PTDPAAAGPLGPWGSMSSGPWAPGMGG-QYPTPNMPYPSPGPYPAPPPPQAPGAAPPVP- 190
Query: 69 HGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
G+ P G +G P+P YP P +P Q + P G+P
Sbjct: 191 -WGTVPPGAWGPPAP--YPAPTGSYPTPGLYPTPSNPFQVPSGPSGAP 235
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/94 (30%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 5 NFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRP--------PSPRDGYGS--PHHTPPY 54
N +P PP PG W + S+ P G P P+P Y S P PP
Sbjct: 24 NTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPG 83
Query: 55 GPRSRPYGSSHSPRHGGSFPGGRFGSPSP-GGYP 87
P P P GG +P P P G YP
Sbjct: 84 PPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYP 117
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 48.9 bits (115), Expect = 2e-06
Identities = 43/125 (34%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 8 PPTPP---YPG-PGGGGWGSGSSFRGTPGGGGPRPPSPRDGY----GSPHHTPPYGPRSR 59
PP PP PG PG G + G PG G + P+ G G P + P GP+
Sbjct: 292 PPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGI 351
Query: 60 PYGSSHSPRHGGSFPGGRFGSPSPGGYPGSY-SRSPAGSQQQFGYSPGQQQTHPQGSPRT 118
P GS HG P G G P GYPG+ R GS + GY P+G+P
Sbjct: 352 P-GS-----HGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGL 405
Query: 119 STPFG 123
P G
Sbjct: 406 PGPKG 410
Score = 43.1 bits (100), Expect = 1e-04
Identities = 51/158 (32%), Positives = 62/158 (39%), Gaps = 39/158 (24%)
Query: 8 PPTPP----YPGPGG--GGWGSGS-SFRGTPGGGGPRPPSP--RDGY----GSPHHTPPY 54
PP P +PGP G G G GS +G PG GP PS + G G P PY
Sbjct: 64 PPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPY 123
Query: 55 GPRS-----------RPYGSSHSPRHGG-SFPG-----GRFGSPSPGGYPGSYSRSPA-- 95
GP+ P G P G S PG G G+P P G+PG
Sbjct: 124 GPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPG 183
Query: 96 --GSQQQFGYS----PGQQ-QTHPQGSPRTSTPFGSGR 126
G + + GY PG++ PQG S P G G+
Sbjct: 184 MNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGK 221
Score = 38.1 bits (87), Expect = 0.004
Identities = 41/127 (32%), Positives = 46/127 (36%), Gaps = 22/127 (17%)
Query: 11 PPYPGPGGGGWGSGSSF----RGTPGGGGPR----PPSPRDGYGSPHHTPPYGPRSRP-- 60
P YPG G G+ +G PG GGP P P G P H GPR P
Sbjct: 388 PGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI 447
Query: 61 ---YGSSHSPRHGGSFPG--GRFGSPSPGGYPGSYSR------SPAGSQQQFGYSPGQQQ 109
G P G FPG G GSP P G G ++ P G G+S
Sbjct: 448 PGTRGPIGPPGIPG-FPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGL 506
Query: 110 THPQGSP 116
P G P
Sbjct: 507 PGPPGPP 513
Score = 35.8 bits (81), Expect = 0.020
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 28 RGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYP 87
+GTPG GP P G P P YG G P G G+ G P G P
Sbjct: 59 QGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGL-QGEPGLPGPPGPSAVGKPGVPGLPGKP 117
Query: 88 GSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
G R P G + G + P G P P G
Sbjct: 118 G--ERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAG 151
Score = 31.6 bits (70), Expect = 0.38
Identities = 32/117 (27%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGY----GSPHHTPPYGPRSRPYGSSHSPRHGG 71
PG G G PG GP P G+ G P P GP + P
Sbjct: 433 PGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPP 492
Query: 72 SFPG-----GRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
PG G G P P G PG P + G+ Q+ G+P S G
Sbjct: 493 GPPGPRGHSGEPGLPGPPGPPG----PPGQAVMPEGFIKAGQRPSLSGTPLVSANQG 545
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 48.9 bits (115), Expect = 2e-06
Identities = 44/132 (33%), Positives = 50/132 (37%), Gaps = 29/132 (21%)
Query: 8 PPTPPY----PGPGGGGWGSGSSFRGTPGG----GGPRPPSPRDGYGSPHHTPPYG---- 55
PP PP P P GG G G P G GG + S R G P PP G
Sbjct: 256 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP 315
Query: 56 -----PRSRPYGSSHSPRHGGSF------PGGRFGSPSPGGYPGSYSRSPAGSQQQFGYS 104
P +P G P GG+ PG G P GG +RSP G Q
Sbjct: 316 QGPPPPPGKPQGP---PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQG---P 369
Query: 105 PGQQQTHPQGSP 116
P Q+ +PQG P
Sbjct: 370 PQQEGNNPQGPP 381
Score = 48.1 bits (113), Expect = 4e-06
Identities = 40/130 (30%), Positives = 48/130 (36%), Gaps = 21/130 (16%)
Query: 7 RPPTPPYPG-----PGGGGWGSGSSF------RGTPGGGGPRPPSPRDGYGSPHHTPPYG 55
+P PP PG P GG S SS +G P GG +P P G P PP G
Sbjct: 273 KPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 332
Query: 56 --------PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQ 107
P +P G P+ G R P G P +P G G +P Q
Sbjct: 333 GNKPQGPPPPGKPQGPP--PQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQ 390
Query: 108 QQTHPQGSPR 117
Q P G P+
Sbjct: 391 PQAPPAGQPQ 400
Score = 47.4 bits (111), Expect = 7e-06
Identities = 38/110 (34%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 8 PPTPPYP-GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
PP P P GP G S R PG P+ P P+ G PP G P +
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 272
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
G PG G P GG SRSP G Q P Q PQG P
Sbjct: 273 KPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQG---PPPQGGNQPQGPP 319
Score = 47.0 bits (110), Expect = 9e-06
Identities = 46/137 (33%), Positives = 52/137 (37%), Gaps = 25/137 (18%)
Query: 8 PPTPPY----PGPGGGGWGSG-----SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRS 58
PP+PP P P GG G +G P GG +P P G P PP G +S
Sbjct: 50 PPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKS 108
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGY----PGSYSRSPAGSQQQFGYSPGQQQTHPQG 114
R SPR S PG G P GG P P G Q G P Q P G
Sbjct: 109 R------SPR---SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP--QGPPPPG 157
Query: 115 SPRTSTPFGSGRVREKR 131
P+ P G + R R
Sbjct: 158 KPQGPPPQGDNKSRSSR 174
Score = 45.1 bits (105), Expect = 3e-05
Identities = 39/128 (30%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P P P P GG G P G P+ P P+ G PP P+ P
Sbjct: 239 PGKPQGPPPQGGNQPQGPP----PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKS 294
Query: 68 RHGGSFPGGRFGSPSPGGY----PGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
R S PG G P GG P P G Q G P Q P G P+ P G
Sbjct: 295 RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP--QGPPPPGKPQGPPPQG 352
Query: 124 SGRVREKR 131
+ R R
Sbjct: 353 GSKSRSAR 360
Score = 44.7 bits (104), Expect = 4e-05
Identities = 36/116 (31%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P P P P GG G P G P+ P P+ G PP P+ P +
Sbjct: 115 PGKPQGPPPQGGNQPQGPP----PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKS 170
Query: 68 RHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
R S PG G P GG P G Q P Q PQG P P G
Sbjct: 171 RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---PPPQGGNKPQGPPPPGKPQG 223
Score = 44.7 bits (104), Expect = 4e-05
Identities = 38/128 (29%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P P P P GG G P G P+ P P+ G PP P+ P +
Sbjct: 177 PGKPQGPPPQGGNQPQGPP----PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKS 232
Query: 68 RHGGSFPGGRFGSPSPGGY----PGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
+ S PG G P GG P P G Q G P Q P G P+ P G
Sbjct: 233 QSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP--QGPPPPGKPQGPPPQG 290
Query: 124 SGRVREKR 131
+ R R
Sbjct: 291 GSKSRSSR 298
Score = 44.3 bits (103), Expect = 6e-05
Identities = 42/131 (32%), Positives = 47/131 (35%), Gaps = 29/131 (22%)
Query: 9 PTPPYPGPGGGGWGSGSSFRGTPGGGGPRPP--------SPRDGYGSPHHTPPYG----- 55
P PP P G G+ +G P G P+ P SPR G P PP G
Sbjct: 71 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ 130
Query: 56 ----PRSRPYGSSHSPRHGGSF------PGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSP 105
P +P G P GG+ PG G P G SRSP G Q P
Sbjct: 131 GPPPPPGKPQG---PPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQG---PP 184
Query: 106 GQQQTHPQGSP 116
Q PQG P
Sbjct: 185 PQGGNQPQGPP 195
Score = 43.5 bits (101), Expect = 1e-04
Identities = 36/110 (32%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 8 PPTPPYP-GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
PP P P GP G S R PG P+ P P+ G PP G P +
Sbjct: 153 PPPPGKPQGPPPQGDNKSRSSRSPPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 210
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
G PG G P G +RSP G Q P Q PQG P
Sbjct: 211 KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQG---PPPQGGNQPQGPP 257
Score = 42.4 bits (98), Expect = 2e-04
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 28 RGTPGGGGPRPPSPRDGYGSPHHTPPYG---------PRSRPYGSSHSPRHGGSFPGGRF 78
+G P GG +P P G P PP G P +P G P GG+ P G
Sbjct: 37 QGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---PPPQGGNKPQGPP 93
Query: 79 GSPSPGGYP--GSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
P G P G SRSP + P Q PQG P
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 133
Score = 30.4 bits (67), Expect = 0.85
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 8 PPTPPYP-GPGGGGWGSGSSFRGTPG---------GGGPRPPSPRDGYGSPHHTPPYGPR 57
PP P P GP G S R PG G P+ P P G G+P P P
Sbjct: 339 PPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAG-GNPQQ-PQAPPA 396
Query: 58 SRPYGSSHSPRHG 70
+P G P+ G
Sbjct: 397 GQPQGPPRPPQGG 409
Score = 29.6 bits (65), Expect = 1.4
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 46 GSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSP 105
G+P PP G + P+ S PG G P GG P G Q P
Sbjct: 34 GNPQGAPPQG--------GNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---PP 82
Query: 106 GQQQTHPQGSPRTSTPFG 123
Q PQG P P G
Sbjct: 83 PQGGNKPQGPPPPGKPQG 100
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/118 (33%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 8 PPTPPY----PGPGGGGWGSGSSFRGTPGG---GGPRPPSPRDGYGSPHHTPPYGPRSRP 60
PP PP P P GG G G P G G + SPR G P PP G +P
Sbjct: 50 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG--GKP 107
Query: 61 YGSSHSPRHGGSFPGGRFGSP-SPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPR 117
G P GGS P P G P +P G G +P Q Q P G P+
Sbjct: 108 QG---PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 162
Score = 45.1 bits (105), Expect = 3e-05
Identities = 44/121 (36%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 11 PPYPGPGGGGWGSG-----SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
P P P GG G +G P GG +P P G P PP G +SR
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKSR------ 88
Query: 66 SPRHGGSFPGGRFGSPSPGGYP-------GSYS---RSPAGSQQQFGYSPGQQQTHPQGS 115
SPR S PG G P GG P GS S RSP G Q P Q+ +PQG
Sbjct: 89 SPR---SPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQG---PPQQEGNNPQGP 142
Query: 116 P 116
P
Sbjct: 143 P 143
Score = 30.4 bits (67), Expect = 0.85
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P P P P GG +G P GG + S R +PP P+ P ++P
Sbjct: 94 PGKPQGPPPQGG------KPQGPPAQGGSKSQSAR--------SPPGKPQGPPQQEGNNP 139
Query: 68 RHGGSFPGGRFGSPS--PGGYPGSYSRSPAGSQ 98
+ GG P P G P R P G +
Sbjct: 140 QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR 172
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 48.1 bits (113), Expect = 4e-06
Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 34/128 (26%)
Query: 11 PPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYG---PRSRPYGSSHSP 67
P PG GGG G P P+P SP D G PYG P S+ G P
Sbjct: 361 PMSPGSSGGG--------GQPLARTPQPSSPMDQMGKMR-PQPYGGTNPYSQQQGPPSGP 411
Query: 68 RHGGSFPGGRFGSPSPGGYPG-------------SYSRS--PAGSQQQFGYSP------- 105
+ G +PG +GS +P YP SY++ P G Q GY
Sbjct: 412 QQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471
Query: 106 GQQQTHPQ 113
QQ HPQ
Sbjct: 472 NQQSPHPQ 479
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/123 (28%), Positives = 40/123 (32%), Gaps = 14/123 (11%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPG 75
PGGGG GS P P P G+G P+ P + H G PG
Sbjct: 121 PGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG 180
Query: 76 ------GRFGSPSPGGYPGSYSRSPAGSQQQF-GYSPGQQQTHPQ------GSPRTSTPF 122
G G P P S Q+ Y P + P SPR TP
Sbjct: 181 LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTP- 239
Query: 123 GSG 125
GSG
Sbjct: 240 GSG 242
Score = 33.1 bits (74), Expect = 0.13
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 11 PPYPGPGGGGWGSGSSF----RGTPGGGGPRPP-SPRDGYGSPHHTPPYG--PRSRPYGS 63
PPY G G+G + +P +PP S + +PH P Y P+S+P
Sbjct: 452 PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQL 511
Query: 64 SHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGY------SPGQQQTHPQGSPR 117
S P SP YP S + Q Q Y SP QQQ Q +P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPS 571
Query: 118 T 118
T
Sbjct: 572 T 572
Score = 33.1 bits (74), Expect = 0.13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 55 GPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAG 96
G +S P S SP PG R SPSP G P S ++S +G
Sbjct: 671 GEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSG 712
Score = 32.0 bits (71), Expect = 0.29
Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 14 PGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS------- 66
PG G S + P SP + SPH GP P GS S
Sbjct: 659 PGVSTSGISSSQGEQSNPA------QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSG 712
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTP 121
P + PG + P G S P+ +Q G Q +PQ P+ S+P
Sbjct: 713 PLSPAAVPGNQMPPRPPSGQSDSIMH-PSMNQSSIAQDRGYMQRNPQ-MPQYSSP 765
Score = 29.3 bits (64), Expect = 1.9
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGP---RSRPYGS 63
+PP+P G G S+ GG +PP+P +PH P P RS G
Sbjct: 1131 QPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPA---STPHSQIPPLPGMSRSNSVGI 1187
Query: 64 SHSPRHG--GSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRT--- 118
+ G +F +P+PG P S + + + Y P + P GS R
Sbjct: 1188 QDAFNDGSDSTFQKRNSMTPNPGYQP---SMNTSDMMGRMSYEPNKD---PYGSMRKAPG 1241
Query: 119 STPFGS 124
S PF S
Sbjct: 1242 SDPFMS 1247
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 48.1 bits (113), Expect = 4e-06
Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 34/128 (26%)
Query: 11 PPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYG---PRSRPYGSSHSP 67
P PG GGG G P P+P SP D G PYG P S+ G P
Sbjct: 361 PMSPGSSGGG--------GQPLARTPQPSSPMDQMGKMR-PQPYGGTNPYSQQQGPPSGP 411
Query: 68 RHGGSFPGGRFGSPSPGGYPG-------------SYSRS--PAGSQQQFGYSP------- 105
+ G +PG +GS +P YP SY++ P G Q GY
Sbjct: 412 QQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471
Query: 106 GQQQTHPQ 113
QQ HPQ
Sbjct: 472 NQQSPHPQ 479
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/123 (28%), Positives = 40/123 (32%), Gaps = 14/123 (11%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPG 75
PGGGG GS P P P G+G P+ P + H G PG
Sbjct: 121 PGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG 180
Query: 76 ------GRFGSPSPGGYPGSYSRSPAGSQQQF-GYSPGQQQTHPQ------GSPRTSTPF 122
G G P P S Q+ Y P + P SPR TP
Sbjct: 181 LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTP- 239
Query: 123 GSG 125
GSG
Sbjct: 240 GSG 242
Score = 33.1 bits (74), Expect = 0.13
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 11 PPYPGPGGGGWGSGSSF----RGTPGGGGPRPP-SPRDGYGSPHHTPPYG--PRSRPYGS 63
PPY G G+G + +P +PP S + +PH P Y P+S+P
Sbjct: 452 PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQL 511
Query: 64 SHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGY------SPGQQQTHPQGSPR 117
S P SP YP S + Q Q Y SP QQQ Q +P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPS 571
Query: 118 T 118
T
Sbjct: 572 T 572
Score = 33.1 bits (74), Expect = 0.13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 55 GPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAG 96
G +S P S SP PG R SPSP G P S ++S +G
Sbjct: 671 GEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSG 712
Score = 32.0 bits (71), Expect = 0.29
Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 14 PGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS------- 66
PG G S + P SP + SPH GP P GS S
Sbjct: 659 PGVSTSGISSSQGEQSNPA------QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSG 712
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTP 121
P + PG + P G S P+ +Q G Q +PQ P+ S+P
Sbjct: 713 PLSPAAVPGNQMPPRPPSGQSDSIMH-PSMNQSSIAQDRGYMQRNPQ-MPQYSSP 765
Score = 31.2 bits (69), Expect = 0.50
Identities = 40/139 (28%), Positives = 45/139 (32%), Gaps = 31/139 (22%)
Query: 8 PPTPPYPGPG---GGGWGSGSSFRGTPGGG----GPRPPSPRDG-YGSPHHTPPYGPRSR 59
P + P+ G GG G S PG G GPR P G Y P GP
Sbjct: 1240 PGSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGN 1299
Query: 60 PYGSSHSPRHGGSFPGGRFGSPSPGGYP---------------------GSYSRSPAGSQ 98
+ P S P G SP YP G+ S SP SQ
Sbjct: 1300 MSTGAPQPNLMPSNPDS--GMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQ 1357
Query: 99 QQFGYSPGQQQTHPQGSPR 117
Q Y QQ + P PR
Sbjct: 1358 QTTMYQQQQQVSSPAPLPR 1376
Score = 29.3 bits (64), Expect = 1.9
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGP---RSRPYGS 63
+PP+P G G S+ GG +PP+P +PH P P RS G
Sbjct: 1131 QPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPA---STPHSQIPPLPGMSRSNSVGI 1187
Query: 64 SHSPRHG--GSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRT--- 118
+ G +F +P+PG P S + + + Y P + P GS R
Sbjct: 1188 QDAFNDGSDSTFQKRNSMTPNPGYQP---SMNTSDMMGRMSYEPNKD---PYGSMRKAPG 1241
Query: 119 STPFGS 124
S PF S
Sbjct: 1242 SDPFMS 1247
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 48.1 bits (113), Expect = 4e-06
Identities = 51/170 (30%), Positives = 60/170 (35%), Gaps = 39/170 (22%)
Query: 34 GGPRPPS----PRDGYGSPHHTPP-------YGPRSRPYGSSHSPRH-GGSFPGGRFGSP 81
GGP PP P SPH PP GP S+P+ SPR+ GG P R G+
Sbjct: 113 GGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPF---MSPRYAGGPRPPIRMGNQ 169
Query: 82 SPGGYPGSYSRSPAGSQQQFGYSPGQQQTHP--------QGSPRTSTPFGSGRVREKRMS 133
PGG PG+ P P +QQ HP PR P G G
Sbjct: 170 PPGGVPGTQPLLPN------SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGM 223
Query: 134 NELENYFKPSM--------LEDPWAGLEPVSVVDISQQYSNTQTFTGKKG 175
N P+M PW P S I S+ T+ G G
Sbjct: 224 RPPPNSLGPAMPGINMGPGAGRPWP--NPNSANSIPYSSSSPGTYVGPPG 271
Score = 46.2 bits (108), Expect = 1e-05
Identities = 45/128 (35%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 1 MQRQNFRPPTPPYP-GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTP-PYGPRS 58
MQR N PP P GPG +GSG R P GP P G G+ P P S
Sbjct: 200 MQRMN--PPRGMGPMGPGPQNYGSG--MRPPPNSLGPAMPGINMGPGAGRPWPNPNSANS 255
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGYPGS-YSRSPAGSQQQFGYSPGQQQTHPQGSPR 117
PY SS PG G P GG PG+ SPA S P G R
Sbjct: 256 IPYSSSS--------PGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 307
Query: 118 TSTPFGSG 125
++ P G G
Sbjct: 308 SNFPMGPG 315
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.8 bits (112), Expect = 5e-06
Identities = 49/138 (35%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 2 QRQNFRPPTPP-YPG-PGGGGWGSGSSFRGTPG----GGGPRPPSPRDGYGSPHHTPPYG 55
+R PP P +PG PG G G RG PG GG P P G G P G
Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQG 858
Query: 56 PRSRPYGSSHSPRHGGSFPGGRF--GSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQ 113
+ GS P G FPG R G P G PG P+GS + G T
Sbjct: 859 VKGER-GSPGGPGAAG-FPGARGLPGPPGSNGNPGP--PGPSGSPGKDGPPGPAGNTGAP 914
Query: 114 GSPRTSTPFG-SGRVREK 130
GSP S P G +G+ EK
Sbjct: 915 GSPGVSGPKGDAGQPGEK 932
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/128 (31%), Positives = 45/128 (35%), Gaps = 20/128 (15%)
Query: 16 PGGGGWGSGSSFRGTPGGGG-------PRPPSPRDGYGSPHHTPPYGPRSRP-YGSSHSP 67
PG G G RG PG G P PP + G P P GPR +P P
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGP 583
Query: 68 RHGGSFPG-----GRFGSPSPGGYPGSYSRS-PAGSQQQFGYSPGQQQTHP------QGS 115
+ PG G G P P G PG + P G G + T P QG
Sbjct: 584 KGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGL 643
Query: 116 PRTSTPFG 123
P T P G
Sbjct: 644 PGTGGPPG 651
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/113 (32%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 14 PG-PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS 72
PG PG G + RG PG GP P+ G P P G R P PR
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPN-----GIPGEKGPAGERGAP--GPAGPRGAAG 522
Query: 73 FPG--------GRFGSPSPGGYPGSYSR-SPAGSQQQFGYSPGQQQTHPQGSP 116
PG G G P G PGS + P GSQ + G + P+G P
Sbjct: 523 EPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP 575
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/109 (33%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPR-------PPSPRDGYGSPHHTPPYGPRSR- 59
P P PGP G GS PG GPR PP G P P GPR
Sbjct: 1115 PGAPGSPGPAGQQGAIGS-----PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR 1169
Query: 60 -PYGSSHSPRHGGS-FPGGRFGSPSP-GGYPGSYSRSPAGSQQQFGYSP 105
GS SP H G P G G+P P G G+ + + G ++ G++P
Sbjct: 1170 GERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAP 1218
Score = 41.6 bits (96), Expect = 4e-04
Identities = 44/130 (33%), Positives = 51/130 (39%), Gaps = 19/130 (14%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPG----GGGPRPPSPRDGYGSPHHTPPYGPRSRPYG 62
+PPT P P G G G PG G P P GSP PP S P G
Sbjct: 90 QPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSP--GPPGICESCPTG 147
Query: 63 -SSHSPRH------GGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGY--SPGQQQTHPQ 113
++SP++ G GG G P P G PG P G+ G SPG Q P
Sbjct: 148 PQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPG--PPGPPGTSGHPGSPGSPGYQ--GPP 203
Query: 114 GSPRTSTPFG 123
G P + P G
Sbjct: 204 GEPGQAGPSG 213
Score = 40.8 bits (94), Expect = 6e-04
Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 15 GPGGGGWGSGSSFRGTPGGGG-PRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSF 73
GPG G+ G PG G P PP P G P G P S G +
Sbjct: 868 GPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAG 927
Query: 74 PGGRFGSPSPGGYPGSYS-RSPAGSQQQFGYSPGQQQTHPQGSP 116
G GSP G PG+ AG G + P+GSP
Sbjct: 928 QPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSP 971
Score = 40.4 bits (93), Expect = 8e-04
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 17 GGGGWGSGSSFRGTPGG-GGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP-RHGGSFP 74
G G F G PG G P P + GSP P GPR P G S P + G S
Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG---PAGPRG-PVGPSGPPGKDGTSGH 1156
Query: 75 GGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF--GSGRVREKRM 132
G G P P G +R GS+ G+ PG Q P G P P G G +
Sbjct: 1157 PGPIGPPGPRG-----NRGERGSEGSPGH-PG--QPGPPGPPGAPGPCCGGVGAAAIAGI 1208
Query: 133 SNELENYFKPSMLEDP 148
E F P ++P
Sbjct: 1209 GGEKAGGFAPYYGDEP 1224
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 14 PG-PGGGGWGSGSSFRGTPGGGGPRPPSPRDGY-GSPHHTPPYGPRSRPYGSSHSPRHGG 71
PG PG G RG+ G GP P G+ GSP GP P + + G
Sbjct: 311 PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGE 370
Query: 72 SFPGGRFGSPSPGGYPGSYSRSPAG 96
P G G+ P G PG + SP G
Sbjct: 371 PGPQGHAGAQGPPGPPG-INGSPGG 394
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 14 PGPGGGGWGSGS----SFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRH 69
PGP GG +G GTPG G P R G GSP G P +
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGM--PGERGGLGSPGPKGDKGEPGGPGADGVPGKD 758
Query: 70 GGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFG---YSPGQQ-QTHPQG 114
G P G G P P G PG A SPG++ +T P G
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPG 807
Score = 39.7 bits (91), Expect = 0.001
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 14 PGPGGGGWGSGSSFR-GTPGGGGPRPPSPRDGY-GSPHHTPPYGPRSRPYGSSHSPRHGG 71
PG G G R G+PGG G R + G G+P H P GP P G S G
Sbjct: 1010 PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVG-PAGKSGD--RGE 1066
Query: 72 SFPGGRFGSPSPGGYPGSYS-RSPAGSQQQFG 102
S P G G+P P G G+ + P G + + G
Sbjct: 1067 SGPAGPAGAPGPAGSRGAPGPQGPRGDKGETG 1098
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 8 PPTPPYP-GPGGGGWGSG----SSFRGTPGGGGP-----RP--PSPRDGYGSPHHTPPYG 55
P PP P GPGG +G +G PG GGP +P P P+ G+P G
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 56 PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQ 108
P G P G+ PG R G+ PG G + P G G +PG Q
Sbjct: 676 DAGAP-GERGPPGLAGA-PGLRGGAGPPGPEGGKGAAGPPGPPGAAG-TPGLQ 725
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/114 (35%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 7 RPPTPPY--PGPGG--GGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYG 62
R PT P PGP G G G G + G PG GPR SP G T P GP P
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGA-PGLPGIAGPRG-SP----GERGETGPPGPAGFPGA 814
Query: 63 SSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
+ GG G G GG PG P G G Q +GSP
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPG--VAGPPGGSGPAGPPGPQGVKGERGSP 866
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/86 (34%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 13 YPGPGGGGWGSGSSFRGTPGG-GGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGG 71
YPGP G G GT G G P P + G P P GP P S G
Sbjct: 172 YPGPAGPPGPPGPP--GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGK 229
Query: 72 SFPGGRFGSPSPGGYPGSYS-RSPAG 96
GR G P G PG + PAG
Sbjct: 230 DGESGRPGRPGERGLPGPPGIKGPAG 255
Score = 36.2 bits (82), Expect = 0.015
Identities = 35/99 (35%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 14 PG-PGGGGWGSGSSFRGTPG-------GGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
PG PGG G RG PG GG PP P G G+ P G P G
Sbjct: 668 PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP-GLQG 726
Query: 66 SP--RHGGSFPG-----GRFGSPSPGGYPGSYS-RSPAG 96
P R G PG G G P G PG R P G
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTG 765
Score = 36.2 bits (82), Expect = 0.015
Identities = 46/149 (30%), Positives = 53/149 (35%), Gaps = 33/149 (22%)
Query: 16 PGGGGWGSGSSFRGTPGGGG----PRPPSPRDGYGSPHHTPPYGPRSR--PYGSSHSPRH 69
PGG G + G PG G P P P G + P GP P GS +P
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Query: 70 GG--------------------SFPG--GRFGSPSPGGYPGSY-SRSPAGSQQQFGYS-- 104
G FPG G GSP P G G+ S PAG + G S
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 105 PGQQQTHPQGSPRTSTPFGSGRVREKRMS 133
PG+ T G P P G R +R S
Sbjct: 1148 PGKDGT--SGHPGPIGPPGPRGNRGERGS 1174
Score = 35.8 bits (81), Expect = 0.020
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 8 PPTPPYPGPGGGGWGSGSS--FRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
PP PP P G GS S ++G PG G PS G P P GP + S
Sbjct: 178 PPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPG--PPGAIGPSGPAGKDGESGR 235
Query: 66 SPRHGGSFPGGRFGSPSPGGYPG 88
R G G G P G PG
Sbjct: 236 PGRPGERGLPGPPGIKGPAGIPG 258
Score = 35.8 bits (81), Expect = 0.020
Identities = 39/129 (30%), Positives = 44/129 (34%), Gaps = 17/129 (13%)
Query: 8 PPTPP----------YPGPGGGGWGSG-SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGP 56
PP PP PG GG G +G PGG G +DG P T P GP
Sbjct: 712 PPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGP--TGPIGP 769
Query: 57 RSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
P G GG+ G G P G PG + F +PG Q P G
Sbjct: 770 PG-PAGQPGDKGEGGA--PGLPGIAGPRGSPGERGETGPPGPAGFPGAPG-QNGEPGGKG 825
Query: 117 RTSTPFGSG 125
P G
Sbjct: 826 ERGAPGEKG 834
Score = 34.3 bits (77), Expect = 0.059
Identities = 36/123 (29%), Positives = 44/123 (35%), Gaps = 19/123 (15%)
Query: 4 QNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGS 63
QN+ P Y G G + + G G P PP P G P GS
Sbjct: 149 QNYSPQYDSYDVKSGVAVGGLAGYPGP--AGPPGPPGPPGTSGHP-------------GS 193
Query: 64 SHSPRHGGSFPG--GRFGSPSPGGYPGSYSRS-PAGSQQQFGYSPGQQQTHPQGSPRTST 120
SP + G PG G+ G P G PG+ S PAG + G + G P
Sbjct: 194 PGSPGYQGP-PGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKG 252
Query: 121 PFG 123
P G
Sbjct: 253 PAG 255
Score = 33.5 bits (75), Expect = 0.100
Identities = 35/107 (32%), Positives = 41/107 (38%), Gaps = 22/107 (20%)
Query: 29 GTPG-GGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYP 87
G PG G P P PR G+P G R RP + G G G P P G P
Sbjct: 288 GLPGENGAPGPMGPR---GAP------GERGRPGLPGAAGARGNDGARGSDGQPGPPGPP 338
Query: 88 GSY----------SRSPAGSQQQFGYSPGQQ-QTHPQGSPRTSTPFG 123
G+ PAGS G +PGQ+ + PQG P G
Sbjct: 339 GTAGFPGSPGAKGEVGPAGSPGSNG-APGQRGEPGPQGHAGAQGPPG 384
Score = 33.5 bits (75), Expect = 0.100
Identities = 35/117 (29%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 9 PTPPYP-------GPGGGGWGSGSSFRGTPGGGGPRPPSPRDG-YGSPHHTPPYGPRSRP 60
P PP P GP G +G+ G+PG GP+ + + G GSP GP P
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAP--GSPGVSGPKGDAGQPGEKGSP---GAQGPPGAP 944
Query: 61 YGSSHSPRHGGSFPGGRFGSPSPGGYPGSYS-RSPAGSQQQFGYSPGQQQTHPQGSP 116
+ G G G P P G PG + +G G S + PQG P
Sbjct: 945 GPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLP 1001
Score = 32.7 bits (73), Expect = 0.17
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 18/106 (16%)
Query: 8 PPTPP----YPG---------PGGGGWGSGS-SFRGTPG----GGGPRPPSPRDGYGSPH 49
PP PP +PG P G +G+ RG PG G PP P GSP
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPG 393
Query: 50 HTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPA 95
GP P G P G G+P G G ++ A
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGA 439
Score = 32.3 bits (72), Expect = 0.22
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 36 PRPPS----PRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYS 91
P+PP+ P +G G P GP+ P R+G G+ GSP G PG
Sbjct: 89 PQPPTAPTRPPNGQG------PQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICE 142
Query: 92 RSPAGSQQQFGYSP 105
P G Q YSP
Sbjct: 143 SCPTGPQ---NYSP 153
Score = 32.0 bits (71), Expect = 0.29
Identities = 32/116 (27%), Positives = 37/116 (31%), Gaps = 18/116 (15%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRP---------PSPRDGY-------GSPHHT 51
P + PGP G SG G PG GPR P DG G P
Sbjct: 545 PGSDGKPGPPGSQGESGRP--GPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 602
Query: 52 PPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQ 107
P GP + + G + PGG G P G G G PG+
Sbjct: 603 GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGE 658
Score = 32.0 bits (71), Expect = 0.29
Identities = 31/95 (32%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPR-PPSPRD--------GYGSPHHTPPYGPRS 58
P +P GP G G +G+PG GP P P G P P GPR
Sbjct: 914 PGSPGVSGPKGDAGQPGE--KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMP--GPRG 969
Query: 59 RP-----YGSSHSPRHGGSFPGGRFGSPSPGGYPG 88
P G S P G + G G P P G PG
Sbjct: 970 SPGPQGVKGESGKP--GANGLSGERGPPGPQGLPG 1002
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 47.8 bits (112), Expect = 5e-06
Identities = 43/119 (36%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 9 PTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYG---PRSRPYGSSH 65
P PP P PG G G S+ GTPG G P G+ PH PP G P +H
Sbjct: 262 PPPPMP-PGAAGHGPPSA--GTPGAG-----HPGHGHSHPHPFPPGGMPHPGMSQMQLAH 313
Query: 66 SPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
HG P G P GG P R P G PG P G P PFGS
Sbjct: 314 HGPHGLGHP--HAGPPGSGGQPP--PRPPPGMPH-----PGPP---PMGMPPRGPPFGS 360
Score = 47.8 bits (112), Expect = 5e-06
Identities = 41/125 (32%), Positives = 47/125 (37%), Gaps = 16/125 (12%)
Query: 6 FRPPTPPYPGPGG------GGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPP---YGP 56
F P P+PG G G G G PG GG PP P G PH PP P
Sbjct: 296 FPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPP--GMPHPGPPPMGMPP 353
Query: 57 RSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
R P+GS H G P P P P Y+ P +GY G P+ +P
Sbjct: 354 RGPPFGSPMG--HPGPMPPHGMRGPPPLMPPHGYTGPP--RPPPYGYQRGPLPP-PRPTP 408
Query: 117 RTSTP 121
R P
Sbjct: 409 RPPVP 413
Score = 44.3 bits (103), Expect = 6e-05
Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 3/112 (2%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSS-HS 66
PP P P P GSG G P G PP P G P P P P G++ H
Sbjct: 215 PPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHG 274
Query: 67 PRHGGSFPGGR--FGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
P G+ G G P +P P SQ Q + HP P
Sbjct: 275 PPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGP 326
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 47.8 bits (112), Expect = 5e-06
Identities = 39/114 (34%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 4 QNFRPPTPP----YPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGS-PHHTPPYGPRS 58
Q+ RPP PP P P GG G P G P P P++G S +PP P+
Sbjct: 130 QSHRPPPPPGKPERPPPQGGNQSQGPP----PHPGKPEGPPPQEGNKSRSARSPPGKPQG 185
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHP 112
P + P+ G PG G P GG P PAG Q G P Q P
Sbjct: 186 PPQQEGNKPQ-GPPPPGKPQGPPPAGGNPQQPQAPPAGKPQ--GPPPPPQGGRP 236
Score = 47.0 bits (110), Expect = 9e-06
Identities = 39/117 (33%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P P P P GG G+ P G RPP P+ G S PP G RP +
Sbjct: 96 PGKPERPPPQGGNQSQGTP---PPPGKPERPP-PQGGNQSHRPPPPPGKPERPPPQGGNQ 151
Query: 68 RHG-GSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
G PG G P G +RSP G Q P Q+ PQG P P G
Sbjct: 152 SQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQG---PPQQEGNKPQGPPPPGKPQG 205
Score = 35.0 bits (79), Expect = 0.034
Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 22 GSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYG-PRSRPYGSSHSPRHGGSFPGGRFGS 80
G R P G P+ P P+ G S PP G P RP + + PG
Sbjct: 43 GGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERP 102
Query: 81 PSPGGYPGSYSRSPAGSQQQFGYSPGQQQTH----PQGSPRTSTPFGSGR 126
P GG + P G ++ G Q+H P G P P G +
Sbjct: 103 PPQGGNQSQGTPPPPGKPER-PPPQGGNQSHRPPPPPGKPERPPPQGGNQ 151
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 47.4 bits (111), Expect = 7e-06
Identities = 41/105 (39%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 11 PPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYG-SPHHTPPYGPRSRPYGSSHSPRH 69
P PGPGG SG+S G+ G P PP+ DG SP++T G+ P
Sbjct: 885 PGAPGPGGP---SGTSSSGSKASGPPNPPAQGDGTSLSPNYT-----LESTSGNDGKPVS 936
Query: 70 GGSFPG-GR----FGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQ 109
GG G GR G SPG + YS +P S G SPGQQQ
Sbjct: 937 GGGGRGRGRRKRDSGHVSPGTFFDKYSAAP-DSGGAPGVSPGQQQ 980
Score = 30.8 bits (68), Expect = 0.65
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 32 GGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSP------GG 85
GG +P G PHH P GS H +H F GG FG P P GG
Sbjct: 81 GGLQAQPVHGFFGGQQPHHGHP--------GSHHPHQHHPHF-GGNFGGPDPGASCLHGG 131
Query: 86 YPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGSGRV 127
Y + G Q ++ G + P + P G +
Sbjct: 132 RLLGYGGAAGGLGSQPPFAEGYEHMAESQGPESFGPQRPGNL 173
Score = 30.4 bits (67), Expect = 0.85
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 10 TPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSP 41
+PP G GGG G G GGGG PP P
Sbjct: 765 SPPSAGGGGGSSGGG-------GGGGAYPPQP 789
Score = 27.3 bits (59), Expect = 7.2
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 3 RQNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHH---TPPYGPRSR 59
RQN PP P P G G SG GGP PS + P H P S
Sbjct: 370 RQNSCPPALPRPQQGEAGTPSGGL-----QDGGPMLPSQHAQFEYPIHRLENRSMHPYSE 424
Query: 60 PYGSSHSP 67
P S P
Sbjct: 425 PVFSMQHP 432
>gi|4502111 annexin VII isoform 1 [Homo sapiens]
Length = 466
Score = 47.4 bits (111), Expect = 7e-06
Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 9 PTPPYPGPGG----GGWGSGSSFRGTPG-GGGPRPPS--PRDGYGSPHHTPPYG----PR 57
P+ YPG GG GG+ + + G P GG P P P G+G P + P
Sbjct: 50 PSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGYPQPP 109
Query: 58 SRPYGSSHS--PRHGGSFPGGRFGSPSPGGYPGSYSRSPA 95
S+ YG + P GG FPGG+ S PGG P +Y PA
Sbjct: 110 SQSYGGGPAQVPLPGG-FPGGQMPSQYPGGQP-TYPSQPA 147
Score = 46.6 bits (109), Expect = 1e-05
Identities = 47/144 (32%), Positives = 53/144 (36%), Gaps = 35/144 (24%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
PP+ YP P G P GGG P P GY P G P G +P
Sbjct: 27 PPSGQYPYPSG----------FPPMGGGAYPQVPSSGYPGAGGYPAPGGYPAPGGYPGAP 76
Query: 68 RHGGS------FPGGRFGSPSPG----GYP----GSYSRSPA---------GSQQQFGYS 104
+ GG+ PG FG P G GYP SY PA G Q Y
Sbjct: 77 QPGGAPSYPGVPPGQGFGVPPGGAGFSGYPQPPSQSYGGGPAQVPLPGGFPGGQMPSQY- 135
Query: 105 PGQQQTHPQGSPRTSTPFGSGRVR 128
PG Q T+P P T T G +R
Sbjct: 136 PGGQPTYP-SQPATVTQVTQGTIR 158
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 26 SFRGTPGGGGPRPPSPRDGY---GSPHHTPPYGPRSRPYGSSHSPRHGGSFPG------- 75
S+ G P G P P GY G PP G PY S P GG++P
Sbjct: 2 SYPGYPPTGYP----PFPGYPPAGQESSFPPSG--QYPYPSGFPPMGGGAYPQVPSSGYP 55
Query: 76 GRFGSPSPGGY--PGSY--SRSPAGSQQQFGYSPGQQQTHPQG 114
G G P+PGGY PG Y + P G+ G PGQ P G
Sbjct: 56 GAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPG 98
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 47.4 bits (111), Expect = 7e-06
Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
+P PP PG G G R + G P G P PP P +P G
Sbjct: 189 KPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPP--PPGKPQGP--- 243
Query: 67 PRHGGSF------PGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
P GG+ PG G P+ GG +RSP G Q P Q+ +PQG P
Sbjct: 244 PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQG---PPQQEGNNPQGPP 296
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/127 (33%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 8 PPTPPY----PGPGGGGWGSGSSFRGTPGG---GGPRPPSPRDGYGSPHHTPPYG----- 55
PP PP P P GG G G P G G + SPR G P PP G
Sbjct: 50 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ 109
Query: 56 ----PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYP--GSYSRSPAGSQQQFGYSPGQQQ 109
P +P G P GG+ P G P G P G SRSP + P Q
Sbjct: 110 GPPPPPGKPQG---PPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGG 166
Query: 110 THPQGSP 116
PQG P
Sbjct: 167 NQPQGPP 173
Score = 45.8 bits (107), Expect = 2e-05
Identities = 44/133 (33%), Positives = 49/133 (36%), Gaps = 18/133 (13%)
Query: 8 PPTPPYPGPGGGGWGSG-----SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYG 62
P P P P GG G +G P GG RP P G P PP G +SR
Sbjct: 94 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPP-GKPQGPPPQGDKSR--- 149
Query: 63 SSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF 122
SPR S PG G P GG P G Q P Q PQG P P
Sbjct: 150 ---SPR---SPPGKPQGPPPQGGNQPQGPPPPPGKPQG---PPPQGGKKPQGPPPPGKPQ 200
Query: 123 GSGRVREKRMSNE 135
G +K S++
Sbjct: 201 GPPPQGDKSRSSQ 213
Score = 45.4 bits (106), Expect = 3e-05
Identities = 41/121 (33%), Positives = 44/121 (36%), Gaps = 18/121 (14%)
Query: 8 PPTPPYPGPGGGGWGSG-----SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYG 62
P P P P GG G +G P GG +P P G P PP G +SR
Sbjct: 155 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPP-GKPQGPPPQGDKSR--- 210
Query: 63 SSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF 122
SS SP PG G P GG P G Q P Q PQG P P
Sbjct: 211 SSQSP------PGKPQGPPPQGGNQPQGPPPPPGKPQG---PPPQGGNKPQGPPPPGKPQ 261
Query: 123 G 123
G
Sbjct: 262 G 262
Score = 43.9 bits (102), Expect = 7e-05
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 10/110 (9%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P P P P GG G P G P+ P P+ G P PP G P S
Sbjct: 216 PGKPQGPPPQGGNQPQGPP----PPPGKPQGPPPQGG-NKPQGPPPPGKPQGPPAQGGSK 270
Query: 68 RHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPR 117
P G+ P G P +P G G +P Q Q P G P+
Sbjct: 271 SQSARSPPGK-----PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 315
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/118 (33%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 11 PPYPGPGGGGWGSG-----SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
P P P GG G +G P GG +P P G P PP G +SR
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKSR------ 88
Query: 66 SPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
SPR S PG G P GG P G Q P Q PQG P P G
Sbjct: 89 SPR---SPPGKPQGPPPQGGNQPQGPPPPPGKPQG---PPPQGGNRPQGPPPPGKPQG 140
Score = 43.1 bits (100), Expect = 1e-04
Identities = 41/129 (31%), Positives = 48/129 (37%), Gaps = 26/129 (20%)
Query: 9 PTPPYPGPGGGGWGSGSSFRGTPGGGGPRPP--------SPRDGYGSPHHTPPYG----- 55
P PP P G G+ +G P G P+ P SPR G P PP G
Sbjct: 111 PPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ 170
Query: 56 ----PRSRPYGSSHSPRHG----GSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQ 107
P +P G P+ G G P G+ P P G S+SP G Q P Q
Sbjct: 171 GPPPPPGKPQGP--PPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG---PPPQ 225
Query: 108 QQTHPQGSP 116
PQG P
Sbjct: 226 GGNQPQGPP 234
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 34 GGPRPPSPRDGYGSPHHTPPYG-PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSR 92
G P+ PSP+ G PP G P+ P + P+ G P G+ P P G R
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQ--GPPPPGKPQGPPPQGDKSRSPR 91
Query: 93 SPAGSQQ----QFGYSPGQQQTHPQGSPRTSTPFGSGR 126
SP G Q Q G P Q P G P+ P G R
Sbjct: 92 SPPGKPQGPPPQGGNQP-QGPPPPPGKPQGPPPQGGNR 128
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 8 PPTPPYP-GPGGGGWGSGSSFRGTPG---------GGGPRPPSPRDGYGSPHHTPPYGPR 57
PP P P GP G S R PG G P+ P P G G+P P P
Sbjct: 254 PPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAG-GNPQQ-PQAPPA 311
Query: 58 SRPYGSSHSPRHG 70
+P G P+ G
Sbjct: 312 GQPQGPPRPPQGG 324
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 47.0 bits (110), Expect = 9e-06
Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFP 74
G GGG+G GS RG GG G G + G S G HS GG++
Sbjct: 500 GGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYG 559
Query: 75 GGR-FGSPSPGGY-PGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGSG 125
GG G S GGY GS SR +G G G + G ++ G G
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGG 612
Score = 43.1 bits (100), Expect = 1e-04
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 13 YPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS 72
+ G GG +G GS G GGG R G G H GS GGS
Sbjct: 550 HSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGG----------GSGFGGESGGS 599
Query: 73 FPGGRFGSPSPGGYPGSYSRS 93
+ GG S S GGY G +S
Sbjct: 600 YGGGEEASGSGGGYGGGSGKS 620
Score = 40.4 bits (93), Expect = 8e-04
Identities = 31/99 (31%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 15 GPGGGGWGSGSSFRGT-------PGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
G GGGG GSG S R + GGGG S GYG +G S+
Sbjct: 16 GGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGG 75
Query: 68 RHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPG 106
GG F G GG G S G G+ G
Sbjct: 76 GSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGG 114
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/101 (33%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFP 74
G GG G GS RG+ GG G YG YG S G S GGS
Sbjct: 474 GLGGRGGSGGSYGRGSRGGSG-------GSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGS 526
Query: 75 GGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGS 115
GG G GG G +S G G+S G + GS
Sbjct: 527 GGGSGGGYGGGSGGGHSGGSGG-----GHSGGSGGNYGGGS 562
Score = 32.7 bits (73), Expect = 0.17
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 13 YPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS 72
+ GGGG G S GGG R R G GS ++ YG S G + GG
Sbjct: 35 FSSSGGGGGGGRFSSSSGYGGGSSR-VCGRGGGGSFGYS--YGGGSG--GGFSASSLGGG 89
Query: 73 FPGGR--FGSPSPGGYPGS 89
F GG FG S GGY S
Sbjct: 90 FGGGSRGFGGASGGGYSSS 108
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 46.6 bits (109), Expect = 1e-05
Identities = 38/95 (40%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPP---YGPRSRPYGSSHSPRHGG 71
G GGG G SF G GGG S G+G H YG S GSS GG
Sbjct: 457 GSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGG 516
Query: 72 SFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPG 106
S GG GS S GGY G S G GY G
Sbjct: 517 SSSGGHGGS-SSGGYGGGSSGGGGG-----GYGGG 545
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/79 (40%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFP 74
G GGG+G GSS G+ GGG S G+G G S YG S GG +
Sbjct: 493 GSSGGGYGGGSSGGGS-SGGGYGGGSSSGGHG--------GSSSGGYGGGSSGGGGGGYG 543
Query: 75 GGRF--GSPSPGGYPGSYS 91
GG GS S GGY G S
Sbjct: 544 GGSSGGGSSSGGGYGGGSS 562
Score = 39.7 bits (91), Expect = 0.001
Identities = 39/95 (41%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPY-GSSHSPRHGGSF 73
G GGG G GSS G G GG S GYG + G Y G S S HGGS
Sbjct: 472 GYGGGSSGGGSS-GG--GHGGGHGGSSGGGYGG--GSSGGGSSGGGYGGGSSSGGHGGSS 526
Query: 74 PGGRFGSPSPGGYPGSY--SRSPAGSQQQFGYSPG 106
GG +G S GG G Y S GS GY G
Sbjct: 527 SGG-YGGGSSGGGGGGYGGGSSGGGSSSGGGYGGG 560
Score = 37.0 bits (84), Expect = 0.009
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPR----DGYGSPHHTPPYGPRSRPYGSSHSPRHG 70
G GG+ GS RG+ GGG S G+G YG S +G S+ G
Sbjct: 46 GFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSS--FGGSY----G 99
Query: 71 GSFPGGRFGSPSPGG 85
GSF GG FG S GG
Sbjct: 100 GSFGGGSFGGGSFGG 114
Score = 34.3 bits (77), Expect = 0.059
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 13 YPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYG---SPHHTPPYGPRSRPYGSSHSPRH 69
Y G GG SG + G GG S GYG S YG S GSS +
Sbjct: 499 YGGGSSGGGSSGGGYGGGSSSGG-HGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGY 557
Query: 70 GGSFPGGRFGSPSPGGYPGSYSRSP 94
GG G S S G S S+ P
Sbjct: 558 GGGSSSGGHKSSSSGSVGESSSKGP 582
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFP 74
G GG G G SFRG+ G S YG +G S GS GG F
Sbjct: 73 GYGGLGGFGGGSFRGSYGSS-----SFGGSYGGSFGGGSFGGGSFGGGSFG----GGGFG 123
Query: 75 GGRFGSPSPGGYPG 88
GG FG GG+ G
Sbjct: 124 GGGFGGGFGGGFGG 137
Score = 31.6 bits (70), Expect = 0.38
Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 13 YPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS 72
Y GG G G G G R S + G + + S GSS GGS
Sbjct: 11 YSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGS 70
Query: 73 FPG-GRFGSPSPGGYPGSYSRSPAGSQQQFGYSPG 106
G G G G + GSY S G + G
Sbjct: 71 SGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGG 105
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 15 GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPR 57
G GGG G GSS G GGG GS + GPR
Sbjct: 541 GYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKGPR 583
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.2 bits (108), Expect = 1e-05
Identities = 46/134 (34%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 5 NFRPPTPPYPGPGGGGWGSGSSFRGTPGG-----GGPRPPSPRDGYGSPHHTPPYGPRSR 59
N PP P PGP G G G P G G P PP P GSP P G
Sbjct: 891 NAGPPGP--PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGT 948
Query: 60 PYGSSHSPRHG-GSFPGGRF-----GSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQ 113
P + + G PG R G P P G PG + P+G+ + G PG P
Sbjct: 949 PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG--KQGPSGASGERG-PPG-----PM 1000
Query: 114 GSPRTSTPFG-SGR 126
G P + P G SGR
Sbjct: 1001 GPPGLAGPPGESGR 1014
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 14 PGPGGGGWGSGS-SFRGTPGGGGPRPPS-------PRDGYGSPHHTPPYGPRSRPYGSSH 65
PGP G G GS F G G GP+ P+ P GSP G P
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
Query: 66 SPRHGGSFPGGRFGSPSPGGYPGSYS-RSPAGSQQQFG 102
+ G P G+ G P P G G P G++ Q G
Sbjct: 541 TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578
Score = 38.9 bits (89), Expect = 0.002
Identities = 36/120 (30%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 11 PPYPGPGGGGWGSGSS-FRGTPGGGGPR-PPSPRDGYGSPHHTPPYGPRSR--PYGSSHS 66
P PGP G G++ G PG GP PP G+ P GPR P G
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGE 372
Query: 67 P-RHGGSFPGGRFGSPSPGGYPGSYSRSPA-GSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
P G + G G+P G PG+ + A G G+ + + PQG P G+
Sbjct: 373 PGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGN 432
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 15 GPGGGGWGSGSSFRGTPGGGG-PRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSF 73
GP G +G+ RG PG G P PP P G P G + P + G
Sbjct: 785 GPSGPAGPTGA--RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG 842
Query: 74 PGGRFGSPSPGGYPGS----YSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
P G G P P G G+ +R AG G+ + P G + P G
Sbjct: 843 PAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG 896
Score = 38.1 bits (87), Expect = 0.004
Identities = 45/166 (27%), Positives = 55/166 (33%), Gaps = 31/166 (18%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPGGGG-------PRPPSPRDGYGSPHHTPPYGPRSR 59
R P P G G RG G G P PP G + P GPR
Sbjct: 1084 RGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP 1143
Query: 60 PYGSSHSPRHGG--SFPG--------------GRFGSPSPGGYPGSYSRSPAGSQQQFGY 103
P GS+ +P G PG G G P P G PG AG F
Sbjct: 1144 P-GSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLP 1202
Query: 104 SPGQQQTHPQGSPRTSTPFGSGRVRE-------KRMSNELENYFKP 142
P Q++ H G + R R+ K +S ++EN P
Sbjct: 1203 QPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSP 1248
Score = 37.4 bits (85), Expect = 0.007
Identities = 34/111 (30%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 7 RPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
R P P PG G G PG GP P G +P + YG + G
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLS--YGYDEKSTGGISV 177
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYS-RSPAGSQQQFGYSPGQQQTHPQGSP 116
P G P G G P P G PG + P G + G S P G P
Sbjct: 178 P--GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPP 226
Score = 37.4 bits (85), Expect = 0.007
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 11 PPYPGPGGGGWGSGSSFRGTPGGGGPR-PPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRH 69
P G G G + G PG GP PP P G+P G S P
Sbjct: 823 PGAKGEPGDAGAKGDA--GPPGPAGPAGPPGPIGNVGAPGAKGARG--------SAGPPG 872
Query: 70 GGSFPG--GRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFG 123
FPG GR G P P G G P G + G + +T P G P P G
Sbjct: 873 ATGFPGAAGRVGPPGPSGNAG--PPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG 926
Score = 37.4 bits (85), Expect = 0.007
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 11 PPYPGPGGGGWGSGSSFR-GTPGGGGPR----PPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
P G G GS R G+PG G R P P G+P P GP +
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 66 SPRHGGSFPGGRFGSPSPGGYPG-------SYSRSPAGSQQQFGYSPGQQQTHPQGSPRT 118
+ G + P G G+ P G G + + G + G+S Q P GSP
Sbjct: 1069 TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE 1128
Query: 119 STPFGS 124
P G+
Sbjct: 1129 QGPSGA 1134
Score = 37.0 bits (84), Expect = 0.009
Identities = 31/113 (27%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPR----PPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGG 71
PG G G+PG GP PP P G P P G R + G
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA 588
Query: 72 SFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
+ G+ G G PG+ PAG + G P G P GS
Sbjct: 589 AGEPGKAGERGVPGPPGAV--GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 639
Score = 36.6 bits (83), Expect = 0.012
Identities = 33/113 (29%), Positives = 40/113 (35%), Gaps = 30/113 (26%)
Query: 8 PPTPP----------YPGPGGGGWGSGSSF-RGTPGGGGPRPPSPRDGYGSPHHTPPYGP 56
PP PP +PGP G G + RG PG G P+ +DG P
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP---- 622
Query: 57 RSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYS-RSPAGSQQQFGYSPGQQ 108
G + P G G P G PG PAG + G PG+Q
Sbjct: 623 -------------GPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG-KPGEQ 661
Score = 36.2 bits (82), Expect = 0.015
Identities = 37/120 (30%), Positives = 41/120 (34%), Gaps = 16/120 (13%)
Query: 14 PGPGGGGWGSGSSF-RGTPGGGGPRP---PSPRDG-YGSPHHTPPYGPRSRPYGSSHSPR 68
PGP G G G GG GPR P+ R G G P P G + P
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP-------- 937
Query: 69 HGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGSGRVR 128
G P G G+P P G G R G Q G P G P P G+ R
Sbjct: 938 -GADGPAGAPGTPGPQGIAG--QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER 994
Score = 35.0 bits (79), Expect = 0.034
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
Query: 14 PGPGGGGWGSGSSFRGTPGGGGPR-PPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS 72
PGP G G + G PG G R PP P+ G P G P H G
Sbjct: 223 PGPPGKNGDDGEA--GKPGRPGERGPPGPQGARGLP------GTAGLPGMKGHRGFSGLD 274
Query: 73 FPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
G G P G PGS + A Q PG+ +G P P G+
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE-----RGRPGAPGPAGA 321
Score = 34.3 bits (77), Expect = 0.059
Identities = 31/102 (30%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS-FP 74
PG G G PG G R PS G G P P G+S P GS
Sbjct: 394 PGAKGANGAPGIAGAPGFPGARGPSGPQGPGGP---------PGPKGNSGEPGAPGSKGD 444
Query: 75 GGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
G G P P G G P G + G + + P G P
Sbjct: 445 TGAKGEPGPVGVQG-----PPGPAGEEGKRGARGEPGPTGLP 481
Score = 33.9 bits (76), Expect = 0.077
Identities = 40/125 (32%), Positives = 44/125 (35%), Gaps = 26/125 (20%)
Query: 8 PPTPPYP-----GPGG-GGWGSGS--SFRGTPGGGGP-RPPSPRDGYGSPHHTPPYGPRS 58
P PP P PG G GS G PG G PP P G P P GP
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG---PPGPAG 902
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRT 118
+ G G + G G P P G PAG + SPG P G+P T
Sbjct: 903 KEGGKGPRGETGPAGRPGEVGPPGPPG--------PAGEKG----SPGAD--GPAGAPGT 948
Query: 119 STPFG 123
P G
Sbjct: 949 PGPQG 953
Score = 33.5 bits (75), Expect = 0.100
Identities = 38/130 (29%), Positives = 44/130 (33%), Gaps = 29/130 (22%)
Query: 14 PGPGGGGWGSGSSFRGTPGGGGPRP-PSPRDGYGSPHHTPPYGPRSRP--------YGSS 64
PGP G G G PG GP+ P G P + P GPR P G +
Sbjct: 178 PGPMGPSGPRG--LPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 235
Query: 65 HSP----RHGGSFPGGRFGSPSPGGYPGSYSR-------------SPAGSQQQFGYSPGQ 107
P G P G G P G PG PAG + + G SPG+
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG-SPGE 294
Query: 108 QQTHPQGSPR 117
Q PR
Sbjct: 295 NGAPGQMGPR 304
Score = 33.1 bits (74), Expect = 0.13
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 8 PPTPPYPGPGGGGWGSGSSF----RGTPGGGGPRPPSPRDGYGSPHHTPPYGPRS--RPY 61
PP PP P GG + S+ + T G P P P G P GP+ P
Sbjct: 146 PPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPP 205
Query: 62 GSSHSPRHGGSFPGGRFGSPSPGGYPG 88
G P G S P G G P P G G
Sbjct: 206 GEPGEP--GASGPMGPRGPPGPPGKNG 230
Score = 33.1 bits (74), Expect = 0.13
Identities = 39/130 (30%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 8 PPTPPYPG-PGGGGWGSGSSFRGTPGGGGPR--PPSPRDGYGSPHHTPPYG---PRSRPY 61
P T PG G G+ +G G GP+ P SP + G+P P G R RP
Sbjct: 256 PGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN-GAPGQMGPRGLPGERGRPG 314
Query: 62 GSSHSPRHGGSFPGGRFGSP------SPGGYPGSY-SRSPAGSQQQFGYSPGQQQTHPQG 114
+ G G G P P G+PG+ ++ AG Q G S G Q +G
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRG-SEGPQGV--RG 371
Query: 115 SPRTSTPFGS 124
P P G+
Sbjct: 372 EPGPPGPAGA 381
Score = 32.0 bits (71), Expect = 0.29
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 8 PPTPPYPGPGGGGWGSG-SSFRGTPGGGGP--------RP-----PSPRDGYGSPHHTPP 53
P + +PG G G + RG+PG GP RP P + GSP P
Sbjct: 490 PGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549
Query: 54 YGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPG 88
G P + R G P G G G+PG
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPG 584
Score = 31.6 bits (70), Expect = 0.38
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 11 PPYPGPGGGGWGSGSSFRGTPG----GGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
P +PG G G G PG G P P + G+ P G + P +
Sbjct: 409 PGFPGARGPSGPQGPG--GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEE 466
Query: 67 PRHGGSFPGGRFGSPSPGGYPGS-YSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
+ G G G P P G G SR G+ G + + +GSP + P GS
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGAD---GVAGPKGPAGERGSPGPAGPKGS 522
Score = 31.2 bits (69), Expect = 0.50
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 14 PGPGGGGWGSGS-SFRGTPGG-GGPRPPSPRDGYGSPHHTPPYGPR--SRPYGSSHSPRH 69
PGP G +G +G PG G P P R G P GP + P G++ +P +
Sbjct: 646 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGN 705
Query: 70 GGS-----FPG--GRFGSPSPGGYPGSYSRSPAG 96
G+ PG G G+P G PG R AG
Sbjct: 706 DGAKGDAGAPGAPGSQGAPGLQGMPG--ERGAAG 737
Score = 31.2 bits (69), Expect = 0.50
Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 14 PGPGGGGWGSG-SSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGS 72
PGP G +G G+PG G R G P GP P S G +
Sbjct: 739 PGPKGDRGDAGPKGADGSPGKDGVR--------GLTGPIGPPGPAGAPGDKGESGPSGPA 790
Query: 73 FPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQ-QTHPQGSP 116
P G G+P G PG PAG F PG Q +G P
Sbjct: 791 GPTGARGAPGDRGEPG--PPGPAG----FAGPPGADGQPGAKGEP 829
Score = 28.9 bits (63), Expect = 2.5
Identities = 28/87 (32%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 8 PPTPPYPGPGGGGWGSGSS--FRGTPGGGGPRPPSPRDG-YGSPHHTPPYGPRSRPYGSS 64
PP P P G G S F+G PG GP + + G G P GP
Sbjct: 621 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA----- 675
Query: 65 HSPRHGGSFPGGRF--GSPSPGGYPGS 89
R FPG R G P P G G+
Sbjct: 676 ---RGERGFPGERGVQGPPGPAGPRGA 699
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 46.2 bits (108), Expect = 1e-05
Identities = 39/90 (43%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 8 PPTPPYPGPGGGGWGSGS-SFRGTPGGG-----GPRP-PSPRDGYG-SPHHTPPYGPRSR 59
PP PP+ G GG G G + RG PGGG G RP P G G S H P GP
Sbjct: 717 PPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGG 776
Query: 60 PYGSSHSPRH--GGSFPGGRFGSP--SPGG 85
GS H P GGS GG P PGG
Sbjct: 777 -MGSGHRPHEGPGGSMGGGGGHRPHEGPGG 805
Score = 44.3 bits (103), Expect = 6e-05
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 12 PYPGPGGGGWGSGSSFR------GTPGGGGPRPPSPRDGYGSPHHTPPY----------- 54
P+ GPG GG G+G R G+ GG G P G+G PH P+
Sbjct: 815 PHEGPG-GGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHR 873
Query: 55 GPRSRPYGSSHSPRHGGSFPGGRFGSPSPGG 85
GP + P HGG G G S GG
Sbjct: 874 GPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
Score = 43.9 bits (102), Expect = 7e-05
Identities = 36/102 (35%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 11 PPYPGPGGGGW-GSGSSFRGTPGGGGPRP---PSPRDGYGSPHHTPPYGPRSRPYGSSHS 66
PP P G W G G RG P GGP P P R G + PP P P+ +
Sbjct: 670 PPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPP--PPPPPFRGARG 727
Query: 67 PRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQ 108
R GG P GR G P G G R G G S G +
Sbjct: 728 GRSGGGPPNGR-GGPGGGMVGGGGHRPHEGPGGGMGNSSGHR 768
Score = 42.7 bits (99), Expect = 2e-04
Identities = 45/136 (33%), Positives = 47/136 (34%), Gaps = 24/136 (17%)
Query: 8 PPTPPYPGP--GGGGWGSGSSFRGTPGGGGPRPPSP----RDGYGSPHHTPPYGPRSRP- 60
P P GP GG G G G RG G GG PP P R G P R P
Sbjct: 683 PGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
Query: 61 ----YGSSHSPRHGGSFPGGRFGSPS-------PGGYPGSYSRSPAGSQQQFGYSPGQQQ 109
G H P G PGG G+ S PGG GS R G G G +
Sbjct: 743 GGMVGGGGHRPHEG---PGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHR- 798
Query: 110 THPQGSPRTSTPFGSG 125
P P GSG
Sbjct: 799 --PHEGPGGGISGGSG 812
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/87 (36%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSS------HSPRH 69
PGG G G PG GGP P P G G P GP P G P
Sbjct: 631 PGGPGGPKGMQ-HFPPGPGGPMP-GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMR 688
Query: 70 GGSFPGGRFGSPSPGGYPGSYSRSPAG 96
GG GG P PG PG Y R G
Sbjct: 689 GGPMRGG----PGPG--PGPYHRGRGG 709
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 46.2 bits (108), Expect = 1e-05
Identities = 45/128 (35%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 1 MQRQNFRPPTPPYP-GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTP-PYGPRS 58
MQR N PP P GPG +GSG R P GP P G G+ P P S
Sbjct: 180 MQRMN--PPRGMGPMGPGPQNYGSG--MRPPPNSLGPAMPGINMGPGAGRPWPNPNSANS 235
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGYPGS-YSRSPAGSQQQFGYSPGQQQTHPQGSPR 117
PY SS PG G P GG PG+ SPA S P G R
Sbjct: 236 IPYSSSS--------PGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 287
Query: 118 TSTPFGSG 125
++ P G G
Sbjct: 288 SNFPMGPG 295
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 46.2 bits (108), Expect = 1e-05
Identities = 45/128 (35%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 1 MQRQNFRPPTPPYP-GPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTP-PYGPRS 58
MQR N PP P GPG +GSG R P GP P G G+ P P S
Sbjct: 173 MQRMN--PPRGMGPMGPGPQNYGSG--MRPPPNSLGPAMPGINMGPGAGRPWPNPNSANS 228
Query: 59 RPYGSSHSPRHGGSFPGGRFGSPSPGGYPGS-YSRSPAGSQQQFGYSPGQQQTHPQGSPR 117
PY SS PG G P GG PG+ SPA S P G R
Sbjct: 229 IPYSSSS--------PGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 280
Query: 118 TSTPFGSG 125
++ P G G
Sbjct: 281 SNFPMGPG 288
Score = 36.2 bits (82), Expect = 0.015
Identities = 44/155 (28%), Positives = 53/155 (34%), Gaps = 26/155 (16%)
Query: 39 PSPRDGYGSPHHTPPYGPRSRPYGSSH-SPRH-GGSFPGGRFGSPSPGGYPGSYSRSPAG 96
PSP G P+ P GP + SPR+ GG P R G+ PGG PG+ P
Sbjct: 98 PSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPN- 156
Query: 97 SQQQFGYSPGQQQTHP--------QGSPRTSTPFGSGRVREKRMSNELENYFKPSM---- 144
P +QQ HP PR P G G N P+M
Sbjct: 157 -----SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGIN 211
Query: 145 ----LEDPWAGLEPVSVVDISQQYSNTQTFTGKKG 175
PW P S I S+ T+ G G
Sbjct: 212 MGPGAGRPWP--NPNSANSIPYSSSSPGTYVGPPG 244
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 46.2 bits (108), Expect = 1e-05
Identities = 43/127 (33%), Positives = 48/127 (37%), Gaps = 28/127 (22%)
Query: 5 NFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRP-----PSPRDGYGSPHHTPPYGPRSR 59
N+ PP P YPG G + P G P P PSP G PH PY
Sbjct: 13 NYPPPNPGYPG---GPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGY 69
Query: 60 PYGSSHSPRHGGSFPGGRF-------GSPSPGGYP-GSYSRS-----PAGSQQQFGYSPG 106
P G P G +P G + G GGYP G Y +S P G Q F PG
Sbjct: 70 PQG----PYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVF---PG 122
Query: 107 QQQTHPQ 113
Q PQ
Sbjct: 123 QDPDSPQ 129
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 9 PTPPYPGPG--GGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGS 63
P PYP G G + G G P G P+ P P + YG P P P S +G+
Sbjct: 80 PQGPYPQEGYPQGPYPQG----GYPQGPYPQSPFPPNPYGQPQVFPGQDPDSPQHGN 132
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 46.2 bits (108), Expect = 1e-05
Identities = 43/127 (33%), Positives = 48/127 (37%), Gaps = 28/127 (22%)
Query: 5 NFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRP-----PSPRDGYGSPHHTPPYGPRSR 59
N+ PP P YPG G + P G P P PSP G PH PY
Sbjct: 13 NYPPPNPGYPG---GPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGY 69
Query: 60 PYGSSHSPRHGGSFPGGRF-------GSPSPGGYP-GSYSRS-----PAGSQQQFGYSPG 106
P G P G +P G + G GGYP G Y +S P G Q F PG
Sbjct: 70 PQG----PYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVF---PG 122
Query: 107 QQQTHPQ 113
Q PQ
Sbjct: 123 QDPDSPQ 129
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 9 PTPPYPGPG--GGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGS 63
P PYP G G + G G P G P+ P P + YG P P P S +G+
Sbjct: 80 PQGPYPQEGYPQGPYPQG----GYPQGPYPQSPFPPNPYGQPQVFPGQDPDSPQHGN 132
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/122 (31%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 9 PTPPY---PGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
PTPP P P GG + TP PPSP+ G +P P G + P +
Sbjct: 940 PTPPAATPPSPKGGPATPSPKWAPTPPAA--TPPSPKGGPATP---SPKGAPTPPAATPP 994
Query: 66 SPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYS--PGQQQTHPQGSPRTSTPFG 123
SP+ G + P + P P S SPA + G S P P+GSP +TP
Sbjct: 995 SPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP-AATPLP 1053
Query: 124 SG 125
G
Sbjct: 1054 KG 1055
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
PP P P GG + +G P PPSP+ G +P PP G + P + SP
Sbjct: 1105 PPAATPPSPKGGL--ATPPHKGAPTTPAATPPSPKGGLATP---PPKGAPTTPAATPPSP 1159
Query: 68 RHGGSFPGGRFGSPSPGGYP-----GSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF 122
+ G + P + +P P G + SP G+ +P P+G T +P
Sbjct: 1160 KGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPT----TPAATPPSPKGGLATPSPK 1215
Query: 123 GS 124
G+
Sbjct: 1216 GA 1217
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
P TP P G + +G P PPSP+ G +P P G + P + SP
Sbjct: 1149 PTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATP---SPKGAPTTPAATPPSP 1205
Query: 68 RHGGSFPGGRFGSPSPGGYP-----GSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPF 122
+ G + P + +P P G + SP G+ +P P+G P T P
Sbjct: 1206 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT----TPAATPPSPKGGPATPPPK 1261
Query: 123 GS 124
G+
Sbjct: 1262 GA 1263
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPH----HTPPYGPRSRPYGS 63
P TP P G + S +G P PPSP+ G +P PP P G
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116
Query: 64 SHSPRHGGS---------FPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQG 114
+P H G+ P G +P P G P + + +P + P P+G
Sbjct: 1117 LATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPP------PKG 1170
Query: 115 SPRT 118
+P T
Sbjct: 1171 APTT 1174
Score = 40.8 bits (94), Expect = 6e-04
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPG 75
P G + S +G P PPSP+ G +P +P + P + P + SP+ G + P
Sbjct: 925 PAPKGIPASPSPKGAPTPPAATPPSPKGGPATP--SPKWAP-TPPAATPPSPKGGPATPS 981
Query: 76 GRFGSPSPGGYPGSYSRSPA-GSQQQFGYSPGQQQTHPQGSPRTSTPFGSG 125
+ P P S PA S + P P+GSP +TPF G
Sbjct: 982 PKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSP-AATPFPKG 1031
Score = 40.8 bits (94), Expect = 6e-04
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 23/128 (17%)
Query: 9 PTPPY---PGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTP-PYGPRSRPYGSS 64
PTPP P P GG + S +G P PPSP+ GSP TP P G + P +
Sbjct: 986 PTPPAATPPSPKGGP--ATPSPKGAPTPPAVTPPSPK---GSPAATPFPKGASTPPAATP 1040
Query: 65 HSPRHGGSFPGGRFGSPSPGGYPGSYSR---SPAG-----SQQQFGYSPGQQQTHPQGSP 116
SP+ G +P P G P + + SP G S + P P+G P
Sbjct: 1041 PSPK------GSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGP 1094
Query: 117 RTSTPFGS 124
T +P G+
Sbjct: 1095 ATPSPKGA 1102
Score = 40.4 bits (93), Expect = 8e-04
Identities = 41/158 (25%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTP--------GGGGPRPPSPRDGYGSPHHTPPYGPRSR 59
P TPP G + S +GTP GGP PS ++G P TP + +
Sbjct: 1324 PGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSH--KGG 1381
Query: 60 PYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYS---------PGQQQT 110
P + SP+ G + P + SP P S ++PA + G + P
Sbjct: 1382 PAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV 1441
Query: 111 HPQGSPRTSTPFGSGRVREKRMSNELENYFKPSMLEDP 148
+ +P TS P G + L PS E P
Sbjct: 1442 SLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPP 1479
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 9 PTPPY---PGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSH 65
PTPP P P GG + S +G P PPSP+ G +P P G + P +
Sbjct: 963 PTPPAATPPSPKGGP--ATPSPKGAPTPPAATPPSPKGGPATP---SPKGAPTPPAVTPP 1017
Query: 66 SPRHGGS---FPGGRFGSPSPGGYPGSYSRSPAGSQQQFG--YSPGQQQTHPQGSPRTST 120
SP+ + FP G S P P S SPA + G +P P+G P T +
Sbjct: 1018 SPKGSPAATPFPKG--ASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPS 1075
Query: 121 PFGS 124
G+
Sbjct: 1076 LKGA 1079
Score = 36.6 bits (83), Expect = 0.012
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 9 PTPPYPGPGGGGWGSGSS-FRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSP 67
PTPP P G + +G P PPSP+ G P +PP G + P + SP
Sbjct: 1264 PTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPK---GGPATSPPKGAPTPPAATPPSP 1320
Query: 68 RHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTP 121
+ G G+P P G P + +P + +P T P +TP
Sbjct: 1321 K-------GSPGTPPPKGAPTPPAVTPPSPKG----TPTLPATTPSSKGGPTTP 1363
Score = 36.2 bits (82), Expect = 0.015
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 28 RGTPGGGG-PRPPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGY 86
R TP G P PSP+ P TPP SP+ G + P ++ P
Sbjct: 922 RATPAPKGIPASPSPKGAPTPPAATPP------------SPKGGPATPSPKWAPTPPAAT 969
Query: 87 PGSYSRSPA-GSQQQFGYSPGQQQTHPQGSPRTSTPFGS 124
P S PA S + P P+G P T +P G+
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGA 1008
Score = 35.8 bits (81), Expect = 0.020
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 9 PTPP-YPGPGGGGWGSGSSF-RGTPGGGGPRPPSPRDGYGSPHHTP-PYGPRSRPYGSSH 65
PTPP P G + + F +G PPSP+ GSP TP P G + P +
Sbjct: 1009 PTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPK---GSPAATPLPKGAPTTPAATLP 1065
Query: 66 SPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSP 116
SP+ G + P + G+P+P P + SP G G P+G+P
Sbjct: 1066 SPKGGPATPSLK-GAPTP---PAATPPSPKG---------GPATPSPKGAP 1103
Score = 30.4 bits (67), Expect = 0.85
Identities = 40/162 (24%), Positives = 55/162 (33%), Gaps = 22/162 (13%)
Query: 9 PTPPYPGP---GGGGWGSGSSFRG----TPGGG-------------GPRPPSPRDGYGSP 48
PTPP P GG S RG +P G P P R+G +P
Sbjct: 1369 PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATP 1428
Query: 49 HHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQ 108
P P +P S P G +PS G P + +P ++
Sbjct: 1429 SKGDLTPPAVTPVSLKKAP--ATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVAT 1486
Query: 109 QTHPQGSPRTSTPFGSGRVREKRMSNELENYFKPSMLEDPWA 150
+ P+ +P T P G+ + S+ E PS DP A
Sbjct: 1487 SSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIA 1528
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/133 (32%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 22 GSGSSFRGTPGGGGPRPPSPRDGYGSP------HHTPPY---GP-RSRPYGSSHSPRHGG 71
GS S TP PRP +P + P PP+ GP SRPY H GG
Sbjct: 330 GSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGG 389
Query: 72 ------SFP-------GGRFGSP---SPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGS 115
SFP GG G P +P G P + + P Q + PG P
Sbjct: 390 PGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQ 449
Query: 116 PRTSTPFGSGRVR 128
STP GSG R
Sbjct: 450 YLGSTPVGSGVYR 462
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/133 (32%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 22 GSGSSFRGTPGGGGPRPPSPRDGYGSP------HHTPPY---GP-RSRPYGSSHSPRHGG 71
GS S TP PRP +P + P PP+ GP SRPY H GG
Sbjct: 330 GSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGG 389
Query: 72 ------SFP-------GGRFGSP---SPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGS 115
SFP GG G P +P G P + + P Q + PG P
Sbjct: 390 PGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQ 449
Query: 116 PRTSTPFGSGRVR 128
STP GSG R
Sbjct: 450 YLGSTPVGSGVYR 462
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 8 PPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHT-PPYGPRSRPY 61
PP PP P PG G P GG P + + P T P P+ RP+
Sbjct: 582 PPPPPPPPPGSAG-------MMIPPRGGDGPSHESEDFPRPLVTLPGRQPQQRPW 629
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.137 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,301,302
Number of Sequences: 37866
Number of extensions: 1035051
Number of successful extensions: 11496
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 998
Number of HSP's that attempted gapping in prelim test: 5089
Number of HSP's gapped (non-prelim): 4746
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.