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Search of human proteins with 20127479
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20127479 RNA binding motif protein 10 isoform 1 [Homo
sapiens]
(930 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens] 1876 0.0
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens] 1596 0.0
gi|5032031 RNA binding motif protein 5 [Homo sapiens] 841 0.0
gi|5032033 RNA binding motif protein 6 [Homo sapiens] 193 7e-49
gi|39725952 angiogenic factor VG5Q [Homo sapiens] 59 3e-08
gi|8922313 G patch domain containing 2 [Homo sapiens] 57 6e-08
gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapi... 53 1e-06
gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapi... 53 1e-06
gi|56788356 tuftelin interacting protein 11 [Homo sapiens] 52 2e-06
gi|8393259 tuftelin interacting protein 11 [Homo sapiens] 52 2e-06
gi|33469964 splicing factor 4 [Homo sapiens] 49 2e-05
gi|34101286 zinc finger RNA binding protein [Homo sapiens] 49 2e-05
gi|55956788 nucleolin [Homo sapiens] 49 3e-05
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 49 3e-05
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 48 4e-05
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 47 8e-05
gi|161016767 mucin 21 [Homo sapiens] 47 8e-05
gi|167900474 coiled-coil domain containing 75 [Homo sapiens] 47 1e-04
gi|38201714 ELAV-like 1 [Homo sapiens] 46 1e-04
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 46 1e-04
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens] 45 3e-04
gi|50962882 G patch domain containing 8 [Homo sapiens] 45 3e-04
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 44 5e-04
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 44 5e-04
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 44 5e-04
gi|4504487 histidine rich calcium binding protein precursor [Hom... 44 5e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 44 0.001
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 44 0.001
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 44 0.001
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 44 0.001
>gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]
Length = 930
Score = 1876 bits (4859), Expect = 0.0
Identities = 930/930 (100%), Positives = 930/930 (100%)
Query: 1 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS 60
MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
Sbjct: 1 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS 60
Query: 61 SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED 120
SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
Sbjct: 61 SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED 120
Query: 121 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 180
EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
Sbjct: 121 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 180
Query: 181 LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK 240
LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
Sbjct: 181 LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK 240
Query: 241 SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND 300
SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
Sbjct: 241 SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND 300
Query: 301 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 360
TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL
Sbjct: 301 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 360
Query: 361 QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG 420
QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG
Sbjct: 361 QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG 420
Query: 421 GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP 480
GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP
Sbjct: 421 GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP 480
Query: 481 EASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ 540
EASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ
Sbjct: 481 EASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ 540
Query: 541 SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA 600
SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA
Sbjct: 541 SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA 600
Query: 601 QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR 660
QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR
Sbjct: 601 QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR 660
Query: 661 SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD 720
SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD
Sbjct: 661 SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD 720
Query: 721 RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL 780
RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL
Sbjct: 721 RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL 780
Query: 781 SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG 840
SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG
Sbjct: 781 SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG 840
Query: 841 ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG 900
ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG
Sbjct: 841 ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG 900
Query: 901 ARGSSYGVTSTESYKETLHKTMVTRFNEAQ 930
ARGSSYGVTSTESYKETLHKTMVTRFNEAQ
Sbjct: 901 ARGSSYGVTSTESYKETLHKTMVTRFNEAQ 930
>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
Length = 852
Score = 1596 bits (4132), Expect = 0.0
Identities = 822/933 (88%), Positives = 833/933 (89%), Gaps = 84/933 (9%)
Query: 1 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS 60
MEYERRGGRGDRTGRY G +RS+D D
Sbjct: 1 MEYERRGGRGDRTGRY---------GATDRSQD-------------------------DG 26
Query: 61 SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRT---EQGEEEEE 117
E +S RD DYRD DYR+ E G +E +
Sbjct: 27 GENRS--------------------------------RDHDYRDMDYRSYPREYGSQEGK 54
Query: 118 EEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 177
+ ++ E+ S +IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE
Sbjct: 55 HDYDDSSEEQSA--------------EIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 100
Query: 178 FSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCG 237
FSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCG
Sbjct: 101 FSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCG 160
Query: 238 VPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSEN 297
VPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSEN
Sbjct: 161 VPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSEN 220
Query: 298 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAA 357
ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI EAA
Sbjct: 221 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAA 279
Query: 358 QLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQA 417
QLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQA
Sbjct: 280 QLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQA 339
Query: 418 SQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTG 477
SQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTG
Sbjct: 340 SQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTG 399
Query: 478 AGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKS 537
AGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKS
Sbjct: 400 AGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKS 459
Query: 538 ELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYY 597
ELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYY
Sbjct: 460 ELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYY 519
Query: 598 YNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMER 657
YNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMER
Sbjct: 520 YNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMER 579
Query: 658 WARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLA 717
WARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLA
Sbjct: 580 WARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLA 639
Query: 718 SDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRH 777
SDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRH
Sbjct: 640 SDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRH 699
Query: 778 QQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRK 837
QQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRK
Sbjct: 700 QQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRK 759
Query: 838 YGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGS 897
YGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGS
Sbjct: 760 YGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGS 819
Query: 898 GLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ 930
GLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
Sbjct: 820 GLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ 852
>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
Length = 815
Score = 841 bits (2173), Expect = 0.0
Identities = 477/945 (50%), Positives = 608/945 (64%), Gaps = 145/945 (15%)
Query: 1 MEYERRGGRGDRTGRYGAT-DRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDD 59
M ++R R +R+GRYG+ DR D E+RSR RD DY+ R + G YDD
Sbjct: 1 MGSDKRVSRTERSGRYGSIIDRDDRDERESRSRR---RDSDYK---RSSDDRRGDR-YDD 53
Query: 60 SSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEE 119
+ S E R R R+S G+ DGDY + DYR + +E E
Sbjct: 54 YRDYDSPE--------------RERERRNSDRSEDGYHSDGDYGEHDYRHDISDERE--- 96
Query: 120 DEEEEEKASNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEF 178
S +MLR LP TE DIR ++S G Q +VRLM+ K+ G SRGFAFVEF
Sbjct: 97 --------SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKT-GVSRGFAFVEF 147
Query: 179 SHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGV 238
HLQDAT WMEANQ L I G+ ++MHYS+P+PK EDWLCNKC + NF++R KCF+CG
Sbjct: 148 YHLQDATSWMEANQKKLVIQGKHIAMHYSNPRPKF-EDWLCNKCCLNNFRKRLKCFRCGA 206
Query: 239 PKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENA 298
K ++EQ++P GT Q++ +
Sbjct: 207 DKFDSEQEVPPGTTESVQSV-------------------------------------DYY 229
Query: 299 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQ 358
DTIILRN+ PH+ +DSI+ AL+PYA L+ +N+R+IKDKQTQ NRGFAF+QLS+ ++A+Q
Sbjct: 230 CDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQ 289
Query: 359 LLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQAS 418
LLQILQ+LHPPL IDGKTI V+FAK +++D+ ++G+R+SA SVASTAIAAAQW+ +Q S
Sbjct: 290 LLQILQSLHPPLKIDGKTIGVDFAKSARKDLVLSDGNRVSAFSVASTAIAAAQWSSTQ-S 348
Query: 419 QGGEGTWATSEEPPVDYSYYQQ-DEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTG 477
Q GEG VDYSY Q +GY + + Y+ Y
Sbjct: 349 QSGEG-------GSVDYSYLQPGQDGY-----AQYAQYSQDY------------------ 378
Query: 478 AGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMS------ 531
Q F + Q G ++ASS+ GTA + S ++S
Sbjct: 379 ----------------QQFYQQQAGGL------ESDASSASGTAVTTTSAAVVSQSPQLY 416
Query: 532 -----PAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQT 586
P +E P+ +S PA SPT ++Y VPD STYQYDE+SGYYYDP T
Sbjct: 417 NQTSNPPGSPTEEAQPSTSTSTQAPAASPTGVVPGTKYAVPDTSTYQYDESSGYYYDPTT 476
Query: 587 GLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETG-APSKEGKEKKEKHKT 645
GLYYDPNSQYYYN+ +QQYLYWDGE+ TYVPA E S+ H+++G P+KEGKEKKEK K+
Sbjct: 477 GLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESSS--HQQSGLPPAKEGKEKKEKPKS 534
Query: 646 KTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAE 705
KTAQQIAKDMERWA+SLNKQKENFKNSFQP++SLR++ERRESA ADAG+A+ EKKGALAE
Sbjct: 535 KTAQQIAKDMERWAKSLNKQKENFKNSFQPVNSLREEERRESAAADAGFALFEKKGALAE 594
Query: 706 RQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCR 765
RQ +L + ++ P RGLVAAYSG+SD+EEE EEKL DW+K+ACLLCR
Sbjct: 595 RQQLIPELVRNGDEENPL-KRGLVAAYSGDSDNEEELVERLESEEEKLADWKKMACLLCR 653
Query: 766 RQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKY 825
RQFP+K+AL+RHQQLS LHKQN++I+RR+ LSE ELEALE + E MKYRDRAAERREKY
Sbjct: 654 RQFPNKDALVRHQQLSDLHKQNMDIYRRSRLSEQELEALELRERE-MKYRDRAAERREKY 712
Query: 826 GIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIV 885
GIPEPPEPKR+K +V++EQPT+DG+ NIG++MLQAMGW+EGSGLGRK QGI
Sbjct: 713 GIPEPPEPKRKKQ--FDAGTVNYEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGIT 770
Query: 886 TPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ 930
PIEAQ R++G+GLGA+GS+YG++ +SYK+ + K M RF E +
Sbjct: 771 APIEAQVRLKGAGLGAKGSAYGLSGADSYKDAVRKAMFARFTEME 815
>gi|5032033 RNA binding motif protein 6 [Homo sapiens]
Length = 1123
Score = 193 bits (490), Expect = 7e-49
Identities = 133/383 (34%), Positives = 187/383 (48%), Gaps = 77/383 (20%)
Query: 572 YQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGA 631
Y YD +GYYYDP G YYDPN+Q + YVP ++ G
Sbjct: 790 YIYDSATGYYYDPLAGTYYDPNTQ----------------QEVYVP---------QDPGL 824
Query: 632 PSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATAD 691
P +E E KEK T + +K E R ++K+ FQ +S
Sbjct: 825 PEEE--EIKEKKPTSQGKSSSK-KEMSKRDGKEKKDRGVTRFQENAS------------- 868
Query: 692 AGYAILEKKGALAERQHTSMDLPKLASDDRPSPPR------GLVAAYSGESDSEEEQER- 744
+ A AE P + ++ P PP+ GL+ Y G+SD EEE+E
Sbjct: 869 -------EGKAPAEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSDYEEEEEEE 921
Query: 745 ---------GGPER----------EEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHK 785
P++ E+KLTDW KLACLLCRRQFP+KE LI+HQQLS LHK
Sbjct: 922 QTPPPQPRTAQPQKREEQTKKENEEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSDLHK 981
Query: 786 QNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGISTAS 845
QNLEIHR+ SE EL LE+ + E K++ R +RREK + PE KR KY
Sbjct: 982 QNLEIHRKIKQSEQELAYLERREREG-KFKGRGNDRREKLQSFDSPERKRIKYS--RETD 1038
Query: 846 VDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSS 905
D + ++ + + + G + QA GW++G+GLG G+ + EA+ R+RG +GA G +
Sbjct: 1039 SDRKLVDKEDIDTSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGRT 1098
Query: 906 YGVTSTESYKETLHKTMVTRFNE 928
S E+Y++ + + M R+ E
Sbjct: 1099 SKRQSNETYRDAVRRVMFARYKE 1121
Score = 117 bits (292), Expect = 6e-26
Identities = 109/405 (26%), Positives = 182/405 (44%), Gaps = 64/405 (15%)
Query: 20 DRSQDDGGENRSRDHDYRDMDYRSYPREYGSQE--GKHDYDDSSEEQSAEDSYEASPGSE 77
D+SQ G E +S D +E G + G+ D D S E D PGS
Sbjct: 368 DKSQLSGREEQSSD--------AGLFKEEGGLDFLGRQDTDYRSMEYRDVD--HRLPGS- 416
Query: 78 TQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLP 137
Q + + P G D +DQDYRT EE K S ++ L +P
Sbjct: 417 -QMFGYGQSKSFPEGKTARDAQRDLQDQDYRTGPSEE-----------KPSRLIRLSGVP 464
Query: 138 QAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN 196
+ AT+++I ++ G+ + ++L + ++G G+ VEFS L+DA MEANQ +L
Sbjct: 465 EDATKEEILNAFRTPDGMPVKNLQL-KEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLM 523
Query: 197 ILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK--SEAEQKLPLGTRLD 254
I ++V++ Y + W C +C R C C P+ +EA+Q+L +
Sbjct: 524 IQDKEVTLEYVSSL----DFWYCKRCKANIGGHRSSCSFCKNPREVTEAKQELITYPQPQ 579
Query: 255 QQTLPLG-GRELSQGLLPL---PQPYQAQGVLAS-------------------------- 284
+ ++P ++ +Q L P P+P + + S
Sbjct: 580 KTSIPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSRREGPTFRRD 639
Query: 285 -QALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNR 343
+ S E + + TI+L+ + + + I+ L PY L+++NVR+IK++ +
Sbjct: 640 RERESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGH 699
Query: 344 GFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 388
+ FI L + EA ++++ILQ L PP +IDGK + V A G +R+
Sbjct: 700 TYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRN 744
>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
Length = 714
Score = 58.5 bits (140), Expect = 3e-08
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 783 LHKQNLEIHRRAHLSE-------NELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKR 835
L K+ E+ RR L + E ++ ++ KY+DRA +RRE+ G +
Sbjct: 549 LSKEEKELERRKELKKIRVKYGLQNTEYEDEKTLKNPKYKDRAGKRREQVGSEGTFQRDD 608
Query: 836 RKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVR 895
+ ASV E + N G +ML+ MGWK+G GLG+ G+ TPI+ Q R
Sbjct: 609 ------APASVHSE------ITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRT 656
Query: 896 GSGLG 900
+GLG
Sbjct: 657 HAGLG 661
Score = 55.1 bits (131), Expect = 3e-07
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 547 SALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYL 606
S+L + A+ + SQ + + YDE +G Y+D TG YYD +Q YY+ + Y
Sbjct: 188 SSLAESLRAAAEAAVSQ------TGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYY 241
Query: 607 YWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNK-- 664
Y D E Y D + +K+ K+KK K K K A + E+ S ++
Sbjct: 242 YCDVESGRY--QFHSRVDLQPYPTSSTKQSKDKKLKKKRKDPDSSATNEEKDLNSEDQKA 299
Query: 665 ---------QKENFKN 671
++ENF N
Sbjct: 300 FSVEHTSCNEEENFAN 315
>gi|8922313 G patch domain containing 2 [Homo sapiens]
Length = 528
Score = 57.4 bits (137), Expect = 6e-08
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 774 LIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEP 833
L+R + HK+N + + + L +L D+++ RR+ +P P
Sbjct: 405 LLRDNRAERGHKKNCSVRTASRQTSMHLGSLCTGDIKR---------RRKAAPLPGP--- 452
Query: 834 KRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR 893
+ F + +NIG+RMLQ MGW GSGLGR +GI PI+A R
Sbjct: 453 ----------TTAGFVGENAQPILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQR 502
Query: 894 VRGSGLG 900
+G GLG
Sbjct: 503 PKGLGLG 509
>gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapiens]
Length = 1082
Score = 53.1 bits (126), Expect = 1e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 846 VDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSS 905
+DF Q L N+G +MLQ MGWKEG GLG +GI P+ T G GLGA G
Sbjct: 1002 LDFAQQK---LTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQE 1058
Query: 906 YGVTSTESYKETL 918
+ + + +++ +
Sbjct: 1059 HKEDTFDVFRQRM 1071
>gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapiens]
Length = 1082
Score = 53.1 bits (126), Expect = 1e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 846 VDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSS 905
+DF Q L N+G +MLQ MGWKEG GLG +GI P+ T G GLGA G
Sbjct: 1002 LDFAQQK---LTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQE 1058
Query: 906 YGVTSTESYKETL 918
+ + + +++ +
Sbjct: 1059 HKEDTFDVFRQRM 1071
>gi|56788356 tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 832 EPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQ 891
+P ++ + G + + +DF R G IG ++LQ MG+ G GLG+ QGI+ PIEA+
Sbjct: 126 KPSQKGFAGGTKSFMDFGSWERHTKG---IGQKLLQKMGYVPGRGLGKNAQGIINPIEAK 182
Query: 892 TRVRGSGLGARGSSYGVTSTESY 914
R +GA GS S + +
Sbjct: 183 QRKGKGAVGAYGSERTTQSMQDF 205
>gi|8393259 tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 832 EPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQ 891
+P ++ + G + + +DF R G IG ++LQ MG+ G GLG+ QGI+ PIEA+
Sbjct: 126 KPSQKGFAGGTKSFMDFGSWERHTKG---IGQKLLQKMGYVPGRGLGKNAQGIINPIEAK 182
Query: 892 TRVRGSGLGARGSSYGVTSTESY 914
R +GA GS S + +
Sbjct: 183 QRKGKGAVGAYGSERTTQSMQDF 205
>gi|33469964 splicing factor 4 [Homo sapiens]
Length = 645
Score = 48.9 bits (115), Expect = 2e-05
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 847 DFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPI-EAQTRVRGSGLG 900
D+ + L +NIG +ML MGWKEG GLG + QGI P+ + T V G+G G
Sbjct: 551 DYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTTVDGAGFG 605
>gi|34101286 zinc finger RNA binding protein [Homo sapiens]
Length = 1074
Score = 48.9 bits (115), Expect = 2e-05
Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 29/219 (13%)
Query: 397 ISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQG---TESS 453
++ A A A+AAA A A+ GG T T+ DY Y Q+ + T++
Sbjct: 87 VAVARPAPVAVAAAATA---AAYGGYPTAHTA----TDYGYTQRQQEAPPPPPPATTQNY 139
Query: 454 LYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAE 513
++ Y++ T +K + +P A + ++ A ++ QP A YQ + +
Sbjct: 140 QDSYSYVRSTAPAVAYDSK--------QYYQQPTATAAAVAAAAQPQPSVAETYYQTAPK 191
Query: 514 ASSSQGTAANSQSYTIMSPAVLKSELQSPT------HP--SSALPPATSPTAQESYSQYP 565
A SQG +Q+ +K SP +P S+ P A + T SY+Q
Sbjct: 192 AGYSQGATQYTQAQQTRQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSA 251
Query: 566 VPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQ 604
+ Y TS Y Y S YY Q QQ
Sbjct: 252 TYSTTAVTYSGTS---YSGYEAAVYSAASSYYQQQQQQQ 287
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 48.5 bits (114), Expect = 3e-05
Identities = 55/291 (18%), Positives = 126/291 (43%), Gaps = 45/291 (15%)
Query: 115 EEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFA 174
E+ + + ++E+ + ++ + LP T+D+++ + A E+RL+ G+S+G A
Sbjct: 379 EKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFED----AAEIRLV--SKDGKSKGIA 432
Query: 175 FVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRR---- 230
++EF DA + E Q + I G+ +S++Y+ K + N+D+ K + + +
Sbjct: 433 YIEFKTEADAEKTFEEKQGT-EIDGRSISLYYTGEKGQ-NQDYRGGKNSTWSGESKTLVL 490
Query: 231 ----------------EKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQ 274
EK VP+++ G + E ++ L
Sbjct: 491 SNLSYSATEETLQEVFEKATFIKVPQNQN------GKSKGYAFIEFASFEDAKEALNSCN 544
Query: 275 PYQAQGVLASQALS--QGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVR 332
+ +G L +GS + + T+ ++ L+ +T +++ + S R
Sbjct: 545 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD-----GSVRAR 599
Query: 333 VIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 383
++ D++T ++GF F+ ++ +A + ++ IDG + +++AK
Sbjct: 600 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAME----DGEIDGNKVTLDWAK 646
Score = 43.9 bits (102), Expect = 7e-04
Identities = 53/257 (20%), Positives = 85/257 (33%), Gaps = 56/257 (21%)
Query: 6 RGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDY---------------RSYPREYGS 50
+G + + + +D +DD E D + D D S +
Sbjct: 132 KGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDED 191
Query: 51 QEGKHDYDDSSEEQSAEDSYEASPGS--------ETQRRRRRRHRHSPTGPPGFPRDGDY 102
E D DD E+ S E++ E +P + + D D
Sbjct: 192 DEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDE 251
Query: 103 RDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAAT----EDDIRGQLQSHGVQARE 158
D+D E EEEEEEE+EE ++A M Q A + + G +
Sbjct: 252 DDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFV 311
Query: 159 VRLMRNKSS-----------------------GQSRGFAFVEFSHLQDATRWMEANQHSL 195
L NKS+ G +R F +V+F +D + +E L
Sbjct: 312 GNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELT--GL 369
Query: 196 NILGQKVSMHYSDPKPK 212
+ G ++ + KPK
Sbjct: 370 KVFGNEIKLE----KPK 382
Score = 41.6 bits (96), Expect = 0.003
Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 45/219 (20%)
Query: 16 YGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSSE------------- 62
+G + + G++ ++ D R + ++ P + E K ++D++E
Sbjct: 372 FGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGI 431
Query: 63 -------EQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEE 115
E AE ++E G+E R + TG G ++ DYR T GE
Sbjct: 432 AYIEFKTEADAEKTFEEKQGTEIDGRSISLYY---TGEKG--QNQDYRGGKNSTWSGE-- 484
Query: 116 EEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAF 175
S ++L L +ATE+ ++ + +A +++ +N++ G+S+G+AF
Sbjct: 485 ------------SKTLVLSNLSYSATEETLQEVFE----KATFIKVPQNQN-GKSKGYAF 527
Query: 176 VEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKIN 214
+EF+ +DA + + + I G+ + + P+ N
Sbjct: 528 IEFASFEDAKEALN-SCNKREIEGRAIRLELQGPRGSPN 565
Score = 37.7 bits (86), Expect = 0.050
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
S + ++ L + TE+ ++ + R++ ++ +G S+GF FV+F+ +DA
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFDG----SVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Query: 188 MEANQHSLNILGQKVSMHYSDPK 210
EA + I G KV++ ++ PK
Sbjct: 627 KEAMEDG-EIDGNKVTLDWAKPK 648
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 48.5 bits (114), Expect = 3e-05
Identities = 59/215 (27%), Positives = 82/215 (38%), Gaps = 18/215 (8%)
Query: 390 ASNEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQG 449
A G +A I+ A +Q + G W+ P V G+ S
Sbjct: 1496 AGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWS----PSVGSGMTPGAAGFSPSAA 1551
Query: 450 TESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEP---GADSVSMQAFSRAQPGAAPG 506
+++S ++ GY P + T G P GP + P GA S S S A +PG
Sbjct: 1552 SDASGFSPGY-----SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 507 IY--QQSAEASSSQGTAANSQSYTIMSPAVL-KSELQSPTHPS-SALPPATSPTAQESYS 562
Y Q + + +S + S SY+ SP S SPT PS S P+ SPT+
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666
Query: 563 QYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYY 597
P ++ Y TS Y T Y P S Y
Sbjct: 1667 TSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY 1699
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 48.1 bits (113), Expect = 4e-05
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 11/180 (6%)
Query: 7 GGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSA 66
G + G T + + N+SRD RS R+ + + +
Sbjct: 46 GNETSGSSTIGETSKKKRSRSHNKSRDRKRS----RSRDRDRYRRRNSRSRSPGRQCRHR 101
Query: 67 EDSYEASPGSETQRRRRRR----HRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEE 122
S++ GSE++ R RR H SP G+ R G + +R E+ E ++
Sbjct: 102 SRSWDRRHGSESRSRDHRREDRVHYRSPPLATGY-RYGHSKSPHFR-EKSPVREPVDNLS 159
Query: 123 EEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 182
EE+ + V L D+ + G + R+VR++ +++S +S+G A+VEF +Q
Sbjct: 160 PEERDARTVFCMQLAARIRPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQ 218
Score = 35.0 bits (79), Expect = 0.32
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 26/188 (13%)
Query: 256 QTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDT-IILRNLNPHSTMD 314
Q++PL Q LL +P QA ++ + + N + + +L+ + T D
Sbjct: 218 QSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITED 277
Query: 315 SILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQAL-------- 366
+ G P+ + N+ ++KD T ++G+ FI S A + L+ L
Sbjct: 278 MLRGIFEPFGKID--NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 335
Query: 367 --HPPLTIDGKTINVEFAKGSKR-DMAS-----------NEGSRISAASVASTAIAAAQW 412
H +DG T ++ F G + D+ S EG+ I S A+ A AAA
Sbjct: 336 VGHVTERLDGGT-DITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQ 394
Query: 413 AISQASQG 420
A + G
Sbjct: 395 AAALQLNG 402
Score = 33.9 bits (76), Expect = 0.72
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 141 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 189
TED +RG + G + + LM++ +G+S+G+ F+ FS + A R +E
Sbjct: 275 TEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 47.0 bits (110), Expect = 8e-05
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 5 RRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKH-----DYDD 59
R +G RT R Q ++R +++ Y D DYR + +E H +
Sbjct: 301 RHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHE 360
Query: 60 SSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEE 119
++ A D E S +R + R ++S RD DQ+ +E+GE+EE+ +
Sbjct: 361 QEDKPRARDQRERS--DRVWKREKDREKYSQREQ---ERDRQQNDQNRPSEKGEKEEKSK 415
Query: 120 DEEEEEKASNIVMLRMLPQAATEDDIRG-QLQSHGVQAREVRLMRNKSSGQSR 171
+EE K + D R + + GVQ+ E R +SS SR
Sbjct: 416 AKEEHMKVRK-------ERYENNDKYRDREKREVGVQSSERNQDRKESSPNSR 461
Score = 31.2 bits (69), Expect = 4.7
Identities = 40/232 (17%), Positives = 88/232 (37%), Gaps = 22/232 (9%)
Query: 600 AQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWA 659
++ Q+ Y D + R E+ + H+E K +++ K + Q + W
Sbjct: 325 SRDQENHYTDRDYRK-----ERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWK 379
Query: 660 RSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASD 719
R K +E + Q ++D+ R S + +++ + A+ +H + + ++
Sbjct: 380 RE--KDREKYSQREQERDRQQNDQNRPSEKGE------KEEKSKAKEEHMKVRKERYENN 431
Query: 720 DR-PSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQ---KLACLLCRRQFPSKEALI 775
D+ + V S E + + ++ ++K D + K+ + ++ ++
Sbjct: 432 DKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSN 491
Query: 776 RHQQLSGLHKQNLEIHRRAHLSENELEALEK-----NDMEQMKYRDRAAERR 822
L H+ E + E EA+ K N+ M RDR R+
Sbjct: 492 SESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQ 543
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 47.0 bits (110), Expect = 8e-05
Identities = 66/281 (23%), Positives = 99/281 (35%), Gaps = 26/281 (9%)
Query: 294 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI 353
SS +N I+ N H+T I A SS + + + ++ ST
Sbjct: 65 SSVTSNGVSIVTNSEFHTTSSGISTATNSEFSTVSSGISIATNSES-----------STT 113
Query: 354 VEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWA 413
A ++ P T + S A+N S + +S ASTA +
Sbjct: 114 SSGASTATNSESSTPSSGASTATNSDSSTTSSGASTATNSDSS-TTSSEASTATNSE--- 169
Query: 414 ISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKG 473
S + G T SE V + +ESS + G T T + G
Sbjct: 170 -SSTTSSGASTATNSESSTVS-------SRASTATNSESSTTSSGASTATNSESRTTSNG 221
Query: 474 DPTGAGPEASL-EPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMS- 531
T E+S GA + + S GA +S+ SS GTA NS+S T+ S
Sbjct: 222 AGTATNSESSTTSSGASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSG 281
Query: 532 -PAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVST 571
V SE +P+ ++ + S T + D ST
Sbjct: 282 ISTVTNSESSTPSSGANTATNSESSTTSSGANTATNSDSST 322
Score = 45.8 bits (107), Expect = 2e-04
Identities = 44/172 (25%), Positives = 63/172 (36%), Gaps = 9/172 (5%)
Query: 398 SAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQ--------QDEGYGNSQG 449
S +S S+ A + S + G GT SE V G +
Sbjct: 243 SESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSGANTATN 302
Query: 450 TESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASL-EPGADSVSMQAFSRAQPGAAPGIY 508
+ESS + G T T + G T E+S GA + + S GA+
Sbjct: 303 SESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATN 362
Query: 509 QQSAEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQES 560
S+ SS TA NS+S T+ S A + +S T S A S ++ S
Sbjct: 363 SGSSTTSSGTSTATNSESSTVSSGASTATTSESSTTSSGASTATNSESSTVS 414
Score = 40.4 bits (93), Expect = 0.008
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 8/152 (5%)
Query: 398 SAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAH 457
S +S S+ A + S + G T S+ G + +ESS +
Sbjct: 288 SESSTPSSGANTATNSESSTTSSGANTATNSDSSTTS-------SGASTATNSESSTTSS 340
Query: 458 GYLKGTKGPGITGTKGDPTGAGPEASL-EPGADSVSMQAFSRAQPGAAPGIYQQSAEASS 516
G T T + G T +S G + + S GA+ +S+ SS
Sbjct: 341 GASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTSESSTTSS 400
Query: 517 SQGTAANSQSYTIMSPAVLKSELQSPTHPSSA 548
TA NS+S T+ S A + +S T S A
Sbjct: 401 GASTATNSESSTVSSGASTATNSESSTTSSGA 432
>gi|167900474 coiled-coil domain containing 75 [Homo sapiens]
Length = 259
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 853 RDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGS--SYGVTS 910
++ LG +N G +LQ MG+K G LG+ GIV PI + SG+G S
Sbjct: 64 KNALGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAEEK 123
Query: 911 TESYKETLH 919
ESY++ +H
Sbjct: 124 LESYRKKIH 132
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 46.2 bits (108), Expect = 1e-04
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 112 GEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSR 171
G E+ ED + +N+++ LPQ T+D++R S G + +L+R+K +G S
Sbjct: 4 GYEDHMAEDCRGDIGRTNLIV-NYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSL 61
Query: 172 GFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINED 216
G+ FV + +DA R + + L + + + + Y+ P ++ +D
Sbjct: 62 GYGFVNYVTAKDAERAIN-TLNGLRLQSKTIKVSYARPSSEVIKD 105
Score = 35.0 bits (79), Expect = 0.32
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 49/235 (20%)
Query: 136 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL 195
LP+ T+ D+ G + R++ ++++G SRG AF+ F +A
Sbjct: 113 LPRTMTQKDVEDMFSRFG-RIINSRVLVDQTTGLSRGVAFIRFDKRSEA----------- 160
Query: 196 NILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQ 255
++ ++ KP + + + K + + + S A +
Sbjct: 161 ----EEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARR---------- 206
Query: 256 QTLPLGGRELSQGLLPLPQPYQAQ-------GVLASQALSQGSEPSSENANDTIILRNLN 308
GG P +QAQ GV LS + P + ++ I + NL
Sbjct: 207 ----FGG----------PVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLG 252
Query: 309 PHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQIL 363
+ + P+ ++ NV+VI+D T +GF F+ ++ EAA + L
Sbjct: 253 QDADEGILWQMFGPFGAVT--NVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Score = 30.4 bits (67), Expect = 8.0
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 330 NVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFA 382
N RV+ D+ T L+RG AFI+ EA + + PP + + I V+FA
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGS--SEPITVKFA 184
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 46.2 bits (108), Expect = 1e-04
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 29 NRSRDHD-YRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHR 87
NRSRD D YR + RS R G Q +H +S + + + S RR R H
Sbjct: 60 NRSRDRDRYRRRNSRS--RSPGRQ-CRH------RSRSWDRRHGSESRSRDHRREDRVHY 110
Query: 88 HSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRG 147
SP G+ R G + +R E+ E ++ EE+ + V L D+
Sbjct: 111 RSPPLATGY-RYGHSKSPHFR-EKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLED 168
Query: 148 QLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 182
+ G + R+VR++ +++S +S+G A+VEF +Q
Sbjct: 169 FFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQ 202
Score = 35.0 bits (79), Expect = 0.32
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 26/188 (13%)
Query: 256 QTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDT-IILRNLNPHSTMD 314
Q++PL Q LL +P QA ++ + + N + + +L+ + T D
Sbjct: 202 QSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITED 261
Query: 315 SILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQAL-------- 366
+ G P+ + N+ ++KD T ++G+ FI S A + L+ L
Sbjct: 262 MLRGIFEPFGKID--NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 319
Query: 367 --HPPLTIDGKTINVEFAKGSKR-DMAS-----------NEGSRISAASVASTAIAAAQW 412
H +DG T ++ F G + D+ S EG+ I S A+ A AAA
Sbjct: 320 VGHVTERLDGGT-DITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQ 378
Query: 413 AISQASQG 420
A + G
Sbjct: 379 AAALQLNG 386
Score = 33.9 bits (76), Expect = 0.72
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 141 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 189
TED +RG + G + + LM++ +G+S+G+ F+ FS + A R +E
Sbjct: 259 TEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
Length = 1337
Score = 45.1 bits (105), Expect = 3e-04
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 11 DRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSY 70
DR R + DR + D D +RSY R + +H + D+ S E SY
Sbjct: 248 DRRERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRERERERHRHRDNRRSPSLERSY 307
Query: 71 EAS---PGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEE---EEDEEEE 124
+ GS + R ++R R +D++Y + + +E EE +++EEEE
Sbjct: 308 KKEYKRSGSRSPSREKKRARWEEEKDRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEE 367
Query: 125 EKASNIVMLR 134
E+ V +R
Sbjct: 368 EELLKPVWIR 377
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 846 VDFEQPTRDG-LGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG 900
++ EQ + D + SDNIG R+LQ GWK G GLG+ QG PI + G+G
Sbjct: 27 LEIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMG 82
Score = 36.6 bits (83), Expect = 0.11
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 8/171 (4%)
Query: 4 ERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEE 63
+RR G R+ R ++ RSQ G+ S D + +S P +Y +E + D S
Sbjct: 796 QRRAGT-KRSSR--SSHRSQPSSGDEDSDDASSHRLHQKS-PSQYSEEEEEED-SGSEHS 850
Query: 64 QSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQ---DYRTEQGEEEEEEED 120
+S S + RR + + + R Y D DY + D
Sbjct: 851 RSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHD 910
Query: 121 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSR 171
++ + AS+ + ++++DD ++R R++S G+SR
Sbjct: 911 SDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSR 961
Score = 30.4 bits (67), Expect = 8.0
Identities = 57/257 (22%), Positives = 94/257 (36%), Gaps = 47/257 (18%)
Query: 620 EQSADGHKETGAPS-KEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISS 678
E+S H+ K+ + K KHK T ++ +K A S K K+ K
Sbjct: 667 ERSGKSHRHKKKKKHKKSSKHKRKHKADTEEKSSK-----AESGEKSKKRKKR------- 714
Query: 679 LRDDERRESATADAGYAILEKKGALAERQHTSMDLP----KLASDDRPSPPRGLVAAYSG 734
+ + + SA AD+ ++G E + P + A DD SG
Sbjct: 715 -KRKKNKSSAPADS------ERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSG 767
Query: 735 ESD----SEEEQERGGPEREEKLTDWQKLACLLCRRQFPSK---EALIRHQQLSGLH--- 784
+ D Q+ GG + + +L C+R+ +K + R Q SG
Sbjct: 768 KKDEGGGGSSSQDHGGRKHKGELPPSS------CQRRAGTKRSSRSSHRSQPSSGDEDSD 821
Query: 785 -KQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGIST 843
+ +H+++ +E E E + E + R R+ R + RR Y S
Sbjct: 822 DASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSH------RSSRRSYSSSSD 875
Query: 844 ASVDFEQPTRDGLGSDN 860
AS D +R SD+
Sbjct: 876 ASSDQSCYSRQRSYSDD 892
Score = 30.4 bits (67), Expect = 8.0
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 30 RSRDHDYRDMDYRSYPREYGSQEGKHDYD---DSSEEQSAEDSYEASPGSETQRRR---- 82
R R D RS P E GS GK D SS++ P S QRR
Sbjct: 745 RRRRRAQDDSQRRSLPAEEGSS-GKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKR 803
Query: 83 --RRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEE 125
R HR P+ D ++ EEEEE++ E
Sbjct: 804 SSRSSHRSQPSSGDEDSDDASSHRLHQKSPSQYSEEEEEEDSGSE 848
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 44.3 bits (103), Expect = 5e-04
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 90 PTGPPGFPRDGDYRDQDYRTEQG--------EEEEEEEDEEEEEKASNIVMLRMLPQAAT 141
P P P DG+ + + TE+G EEEEEEE+EEEE + ++ L T
Sbjct: 684 PAEPETVP-DGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTT 742
Query: 142 EDDIRGQLQSHG-VQAREVRLMRNKSSG-QSRGFAFVEFSHLQDATRWMEANQHSLNILG 199
E+ ++ G V++ + +NK+ S GF FVE+ + A + ++ Q + + G
Sbjct: 743 EEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHV-VDG 801
Query: 200 QKVSMHYSDPKPK 212
K+ + S+ K
Sbjct: 802 HKLEVRISERATK 814
Score = 42.7 bits (99), Expect = 0.002
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 125 EKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS-SGQSRGFAFVEFSHLQD 183
++ ++ +++R +P A +IR + G + + VRL + + +G RGF FV+F QD
Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFG-ELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886
Query: 184 ATRWMEANQHSLNILGQKVSMHYSD 208
A R A HS ++ G+++ + ++D
Sbjct: 887 AKRAFNALCHSTHLYGRRLVLEWAD 911
Score = 38.5 bits (88), Expect = 0.029
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 38 DMDY-RSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGF 96
DMDY +S + GS S EE+S +++ GSE + S P
Sbjct: 207 DMDYLKSKMVKAGSSSS------SEEEESEDEAVHCDEGSEAEEE------DSSATPVLQ 254
Query: 97 PRDGDYRDQDYRTEQGEEEEEEEDEEEEEKAS-------NIVMLRMLPQAATEDDIRGQL 149
RD Q+ G++ E E E+ A+ + V LR P TE ++ L
Sbjct: 255 ERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFL 314
Query: 150 QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 192
++ +R++RN + G G+ FV+FS+ ++ + ++ N+
Sbjct: 315 AP--LKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNR 354
Score = 34.7 bits (78), Expect = 0.42
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 118 EEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 177
E +EEE+ S + +R LP +TE+D+ +G E+ + + + +GFAF+
Sbjct: 391 ENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYG-PLSELHYPIDSLTKKPKGFAFIT 449
Query: 178 FSHLQDATR-WMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKC 236
F + A + + E + G+ + + S K + +ED + G ++K+
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQ--GRMLHVLPSTIKKEASED--ASALGSSSYKK------- 498
Query: 237 GVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGL 269
K EA+ K + + TL +G ++ +
Sbjct: 499 ---KKEAQDKANSASSHNWNTLFMGPNAVADAI 528
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 44.3 bits (103), Expect = 5e-04
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 90 PTGPPGFPRDGDYRDQDYRTEQG--------EEEEEEEDEEEEEKASNIVMLRMLPQAAT 141
P P P DG+ + + TE+G EEEEEEE+EEEE + ++ L T
Sbjct: 684 PAEPETVP-DGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTT 742
Query: 142 EDDIRGQLQSHG-VQAREVRLMRNKSSG-QSRGFAFVEFSHLQDATRWMEANQHSLNILG 199
E+ ++ G V++ + +NK+ S GF FVE+ + A + ++ Q + + G
Sbjct: 743 EEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHV-VDG 801
Query: 200 QKVSMHYSDPKPK 212
K+ + S+ K
Sbjct: 802 HKLEVRISERATK 814
Score = 42.7 bits (99), Expect = 0.002
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 125 EKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS-SGQSRGFAFVEFSHLQD 183
++ ++ +++R +P A +IR + G + + VRL + + +G RGF FV+F QD
Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFG-ELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886
Query: 184 ATRWMEANQHSLNILGQKVSMHYSD 208
A R A HS ++ G+++ + ++D
Sbjct: 887 AKRAFNALCHSTHLYGRRLVLEWAD 911
Score = 38.5 bits (88), Expect = 0.029
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 38 DMDY-RSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGF 96
DMDY +S + GS S EE+S +++ GSE + S P
Sbjct: 207 DMDYLKSKMVKAGSSSS------SEEEESEDEAVHCDEGSEAEEE------DSSATPVLQ 254
Query: 97 PRDGDYRDQDYRTEQGEEEEEEEDEEEEEKAS-------NIVMLRMLPQAATEDDIRGQL 149
RD Q+ G++ E E E+ A+ + V LR P TE ++ L
Sbjct: 255 ERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFL 314
Query: 150 QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 192
++ +R++RN + G G+ FV+FS+ ++ + ++ N+
Sbjct: 315 AP--LKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNR 354
Score = 34.7 bits (78), Expect = 0.42
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 118 EEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 177
E +EEE+ S + +R LP +TE+D+ +G E+ + + + +GFAF+
Sbjct: 391 ENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYG-PLSELHYPIDSLTKKPKGFAFIT 449
Query: 178 FSHLQDATR-WMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKC 236
F + A + + E + G+ + + S K + +ED + G ++K+
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQ--GRMLHVLPSTIKKEASED--ASALGSSSYKK------- 498
Query: 237 GVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGL 269
K EA+ K + + TL +G ++ +
Sbjct: 499 ---KKEAQDKANSASSHNWNTLFMGPNAVADAI 528
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 44.3 bits (103), Expect = 5e-04
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 90 PTGPPGFPRDGDYRDQDYRTEQG--------EEEEEEEDEEEEEKASNIVMLRMLPQAAT 141
P P P DG+ + + TE+G EEEEEEE+EEEE + ++ L T
Sbjct: 684 PAEPETVP-DGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTT 742
Query: 142 EDDIRGQLQSHG-VQAREVRLMRNKSSG-QSRGFAFVEFSHLQDATRWMEANQHSLNILG 199
E+ ++ G V++ + +NK+ S GF FVE+ + A + ++ Q + + G
Sbjct: 743 EEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHV-VDG 801
Query: 200 QKVSMHYSDPKPK 212
K+ + S+ K
Sbjct: 802 HKLEVRISERATK 814
Score = 42.7 bits (99), Expect = 0.002
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 125 EKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS-SGQSRGFAFVEFSHLQD 183
++ ++ +++R +P A +IR + G + + VRL + + +G RGF FV+F QD
Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFG-ELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886
Query: 184 ATRWMEANQHSLNILGQKVSMHYSD 208
A R A HS ++ G+++ + ++D
Sbjct: 887 AKRAFNALCHSTHLYGRRLVLEWAD 911
Score = 38.5 bits (88), Expect = 0.029
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 38 DMDY-RSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGF 96
DMDY +S + GS S EE+S +++ GSE + S P
Sbjct: 207 DMDYLKSKMVKAGSSSS------SEEEESEDEAVHCDEGSEAEEE------DSSATPVLQ 254
Query: 97 PRDGDYRDQDYRTEQGEEEEEEEDEEEEEKAS-------NIVMLRMLPQAATEDDIRGQL 149
RD Q+ G++ E E E+ A+ + V LR P TE ++ L
Sbjct: 255 ERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFL 314
Query: 150 QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 192
++ +R++RN + G G+ FV+FS+ ++ + ++ N+
Sbjct: 315 AP--LKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNR 354
Score = 34.7 bits (78), Expect = 0.42
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 118 EEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 177
E +EEE+ S + +R LP +TE+D+ +G E+ + + + +GFAF+
Sbjct: 391 ENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYG-PLSELHYPIDSLTKKPKGFAFIT 449
Query: 178 FSHLQDATR-WMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKC 236
F + A + + E + G+ + + S K + +ED + G ++K+
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQ--GRMLHVLPSTIKKEASED--ASALGSSSYKK------- 498
Query: 237 GVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGL 269
K EA+ K + + TL +G ++ +
Sbjct: 499 ---KKEAQDKANSASSHNWNTLFMGPNAVADAI 528
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 44.3 bits (103), Expect = 5e-04
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
Query: 5 RRGGRGDRTG---RYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSS 61
R+ + + TG R + S G +D + D +E G H+ DD S
Sbjct: 442 RQSHQDEETGHGQRGSIKEMSHHPPGHTVVKDRSHLRKDDSEEEKEKEEDPGSHEEDDES 501
Query: 62 EEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDE 121
EQ + ++ S E + H S ++ E EEEEEEEDE
Sbjct: 502 SEQGEKGTHHGSRDQEDEEDEEEGHGLS------------LNQEEEEEEDKEEEEEEEDE 549
Query: 122 EEEEKASNI 130
E E+ + +
Sbjct: 550 ERREERAEV 558
Score = 42.0 bits (97), Expect = 0.003
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 25/126 (19%)
Query: 20 DRS---QDDGGENRSRDHD---YRDMDYRSYPREYGSQEGKHDYDDSSEEQSA------- 66
DRS +DD E + ++ D + + D S E G+ G D +D +E+
Sbjct: 473 DRSHLRKDDSEEEKEKEEDPGSHEEDDESSEQGEKGTHHGSRDQEDEEDEEEGHGLSLNQ 532
Query: 67 -EDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEE 125
E+ E E + RR + G P P + EEEEEEE EE+E
Sbjct: 533 EEEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSE-----------EEEEEEEGLEEDE 581
Query: 126 KASNIV 131
I+
Sbjct: 582 PRFTII 587
Score = 39.7 bits (91), Expect = 0.013
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 10 GDRTGRYGATDRSQDDGGENRS-----RDHDYRDMD--------YRSYPREYGSQEGKHD 56
G G G +D E+R R H ++D D + + +G + HD
Sbjct: 129 GQARGHRGHGSEDTEDSAEHRHHLPSHRSHSHQDEDEDEVVSSEHHHHILRHGHRG--HD 186
Query: 57 YDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQG-EEE 115
+D E+ E+ E S + RHR + DG + QG EE+
Sbjct: 187 GEDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEED 246
Query: 116 EEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQARE 158
++++D+++++ + V + QA Q HG++ E
Sbjct: 247 DDDDDDDDDDDDDDDVSIEYRHQAHRH-------QGHGIEEDE 282
Score = 38.1 bits (87), Expect = 0.038
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 29 NRSRDHDYRD--MDYRSYPREYGSQ------EGKHDYDDSSEEQS---AEDSYEASPGSE 77
+RS+DH D + E+G Q G D +DS+E + + S+ E
Sbjct: 106 HRSQDHKVGDEGVSGEEVFAEHGGQARGHRGHGSEDTEDSAEHRHHLPSHRSHSHQDEDE 165
Query: 78 TQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEE 124
+ H H R G +R D ++GEEEEEEE+EEEE
Sbjct: 166 DEVVSSEHHHH-------ILRHG-HRGHDGEDDEGEEEEEEEEEEEE 204
Score = 32.7 bits (73), Expect = 1.6
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 16 YGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPG 75
+G + R Q ++ D D D D EY Q +H E++ D +
Sbjct: 234 HGPSHRHQGHEEDDDDDDDDDDDDDDDDVSIEYRHQAHRHQGHGIEEDEDVSDGHH---- 289
Query: 76 SETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEE 125
R HRH + D D D TE G + +D +EE
Sbjct: 290 -----HRDPSHRHRSH------EEDDNDDDDVSTEYGHQAHRHQDHRKEE 328
Score = 31.2 bits (69), Expect = 4.7
Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 39/112 (34%)
Query: 29 NRSRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRH 88
+R R H+ D D EYG Q +H D EE A H H
Sbjct: 295 HRHRSHEEDDNDDDDVSTEYGHQAHRHQ-DHRKEEVEAVSG--------------EHHHH 339
Query: 89 SPTGPPGFPRDGDYRDQDYRTEQGEEEEEEE--------------DEEEEEK 126
P D+R Q +R E+ +E+ E DEEEEE+
Sbjct: 340 VP----------DHRHQGHRDEEEDEDVSTERWHQGPQHVHHGLVDEEEEEE 381
Score = 30.8 bits (68), Expect = 6.1
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 76 SETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRM 135
SE R H HS PRD ++D TE G D E+E++ + +
Sbjct: 50 SEEASAELRHHLHS-------PRDHPDENKDVSTENGHHFWSHPDREKEDEDVSKEYGHL 102
Query: 136 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRG 172
LP ++D ++ GV EV + GQ+RG
Sbjct: 103 LPGHRSQDH---KVGDEGVSGEEVFA---EHGGQARG 133
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 43.5 bits (101), Expect = 0.001
Identities = 82/324 (25%), Positives = 116/324 (35%), Gaps = 68/324 (20%)
Query: 436 SYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQA 495
SY QQ YG QG GY + + P P P S +P + + Q
Sbjct: 446 SYTQQIPPYGQ-QGPS------GYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQP 498
Query: 496 FSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQSPT--HPSSALPPAT 553
+ QP + P Q S S Q + Q SPA S+ QS T HP S PP +
Sbjct: 499 SYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQ----SPAPYPSQ-QSTTQQHPQSQ-PPYS 552
Query: 554 SPTAQESYSQ----YPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWD 609
P AQ Y Q P P + Q Y P SQ QSQQ Y
Sbjct: 553 QPQAQSPYQQQQPQQPAPSTLS-------------QQAAYPQPQSQ-----QSQQTAY-- 592
Query: 610 GERRTYVPALEQSAD--GHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKE 667
++ + P E S D G + + APS + ++ + Q + + S++
Sbjct: 593 -SQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPM 651
Query: 668 NFKNSFQP---ISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSP 724
+ + P S + + +S A + ++ HTS LP + PSP
Sbjct: 652 GTEGALSPGVSTSGISSSQGEQSNPAQSPFS-----------PHTSPHLPGIRG---PSP 697
Query: 725 -PRGLVAAYSGESDSEEEQERGGP 747
P G S + Q R GP
Sbjct: 698 SPVG--------SPASVAQSRSGP 713
Score = 33.5 bits (75), Expect = 0.94
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 45 PREYGSQEGKHDYDDSSEEQSAEDSYEASPGSET-----QRRRRRRHRHSPTGPPGFPRD 99
P++ Q+ +HD + S P +T Q++ +R GPP +
Sbjct: 1326 PQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHE 1385
Query: 100 GDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREV 159
G+ Y T QG+ ++++ + + AS + Q + + D+ Q +
Sbjct: 1386 GEMYSVPYSTGQGQPQQQQLPPAQPQPASQ----QQAAQPSPQQDVYNQYGNAYPATATA 1441
Query: 160 RLMRNKSSGQSRGFAF 175
R + G F F
Sbjct: 1442 ATERRPAGGPQNQFPF 1457
Score = 31.2 bits (69), Expect = 4.7
Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 45/198 (22%)
Query: 463 TKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFS-----------RAQPGAAPGIYQQS 511
+ G G G GDP + PG +V+M R +PG P
Sbjct: 1247 SSGQGPNGGMGDPYSR----AAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGP------ 1296
Query: 512 AEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQY------- 564
E + S G P ++ S S + S PP Q+ + Y
Sbjct: 1297 -EGNMSTGAP---------QPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQ 1346
Query: 565 ------PVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGE-RRTYVP 617
P P T Y + Y P G Y P ++ S Y G+ ++ +P
Sbjct: 1347 GTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLP 1406
Query: 618 ALEQSADGHKETGAPSKE 635
+ ++ PS +
Sbjct: 1407 PAQPQPASQQQAAQPSPQ 1424
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 43.5 bits (101), Expect = 0.001
Identities = 82/324 (25%), Positives = 116/324 (35%), Gaps = 68/324 (20%)
Query: 436 SYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQA 495
SY QQ YG QG GY + + P P P S +P + + Q
Sbjct: 446 SYTQQIPPYGQ-QGPS------GYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQP 498
Query: 496 FSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQSPT--HPSSALPPAT 553
+ QP + P Q S S Q + Q SPA S+ QS T HP S PP +
Sbjct: 499 SYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQ----SPAPYPSQ-QSTTQQHPQSQ-PPYS 552
Query: 554 SPTAQESYSQ----YPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWD 609
P AQ Y Q P P + Q Y P SQ QSQQ Y
Sbjct: 553 QPQAQSPYQQQQPQQPAPSTLS-------------QQAAYPQPQSQ-----QSQQTAY-- 592
Query: 610 GERRTYVPALEQSAD--GHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKE 667
++ + P E S D G + + APS + ++ + Q + + S++
Sbjct: 593 -SQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPM 651
Query: 668 NFKNSFQP---ISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSP 724
+ + P S + + +S A + ++ HTS LP + PSP
Sbjct: 652 GTEGALSPGVSTSGISSSQGEQSNPAQSPFS-----------PHTSPHLPGIRG---PSP 697
Query: 725 -PRGLVAAYSGESDSEEEQERGGP 747
P G S + Q R GP
Sbjct: 698 SPVG--------SPASVAQSRSGP 713
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 43.5 bits (101), Expect = 0.001
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 40/233 (17%)
Query: 617 PALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPI 676
P ++ + + T KE EKK+K A+ K E W + L K +E + +
Sbjct: 18 PTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESS 77
Query: 677 SSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGES 736
S R +++E +K G + +S D + S S
Sbjct: 78 SKKRQRKKKEK----------KKSGRYSSSSSSSSD------------------SSSSSS 109
Query: 737 DSEEEQERGGPEREEK-----------LTDWQKLACLLCRRQFPSKEALIRHQQLSGLHK 785
DSE+E ++ G R++K +++ + + +++ SK+ + + + GL K
Sbjct: 110 DSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSK 169
Query: 786 QNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKY 838
+ LS L E + + K + +++E REK + K +K+
Sbjct: 170 KRKMYSEDKPLSSESLSESEYIEEVRAK-KKKSSEEREKATEKTKKKKKHKKH 221
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 43.5 bits (101), Expect = 0.001
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 40/233 (17%)
Query: 617 PALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPI 676
P ++ + + T KE EKK+K A+ K E W + L K +E + +
Sbjct: 28 PTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESS 87
Query: 677 SSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGES 736
S R +++E +K G + +S D + S S
Sbjct: 88 SKKRQRKKKEK----------KKSGRYSSSSSSSSD------------------SSSSSS 119
Query: 737 DSEEEQERGGPEREEK-----------LTDWQKLACLLCRRQFPSKEALIRHQQLSGLHK 785
DSE+E ++ G R++K +++ + + +++ SK+ + + + GL K
Sbjct: 120 DSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSK 179
Query: 786 QNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKY 838
+ LS L E + + K + +++E REK + K +K+
Sbjct: 180 KRKMYSEDKPLSSESLSESEYIEEVRAK-KKKSSEEREKATEKTKKKKKHKKH 231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,596,176
Number of Sequences: 37866
Number of extensions: 2090550
Number of successful extensions: 25026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 548
Number of HSP's that attempted gapping in prelim test: 16895
Number of HSP's gapped (non-prelim): 5369
length of query: 930
length of database: 18,247,518
effective HSP length: 112
effective length of query: 818
effective length of database: 14,006,526
effective search space: 11457338268
effective search space used: 11457338268
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.