CCDC78 11782

Name: CCDC78	Sequence: fasta or formatted (438aa)		NCBI GI: 199559954
Description: coiled-coil domain containing 78		Referenced in: Coiled-Coil Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.4 50 3 C cysteine 1.1 5 1 D aspartate 3.9 17 2 E glutamate 7.8 34 2 F phenylalanine 1.6 7 1 G glycine 7.1 31 2 H histidine 4.6 20 2 I isoleucine 2.1 9 1 K lysine 3.7 16 2 L leucine 11.0 48 2 M methionine 0.5 2 1 N asparagine 2.1 9 1 P proline 5.7 25 2 Q glutamine 8.4 37 2 R arginine 8.4 37 2 S serine 7.3 32 2 T threonine 5.3 23 2 V valine 5.0 22 2 W tryptophan 2.3 10 1 Y tyrosine 0.9 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 78 CNTROB 0.024 centrobin, centrosomal BRCA2 interacting protein is... CNTROB 0.024 centrobin, centrosomal BRCA2 interacting protein iso... GOLGA1 0.020 golgin 97 CDC42BPG 0.020 CDC42 binding protein kinase gamma (DMPK-like) [Hom... GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform c GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform a GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform b GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform b CEP164 0.019 centrosomal protein 164kDa CCDC88B 0.019 coiled-coil domain containing 88 PLEC1 0.017 plectin 1 isoform 11 PLEC1 0.017 plectin 1 isoform 10 PLEC1 0.017 plectin 1 isoform 8 PLEC1 0.017 plectin 1 isoform 7 PLEC1 0.017 plectin 1 isoform 6 PLEC1 0.017 plectin 1 isoform 3 PLEC1 0.017 plectin 1 isoform 2 PLEC1 0.017 plectin 1 isoform 1 MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... CROCC 0.015 ciliary rootlet coiled-coil PPFIA2 0.014 PTPRF interacting protein alpha 2 CXorf15 0.014 gamma-taxilin TTMA 0.014 hypothetical protein LOC645369 CCDC88C 0.014 DVL-binding protein DAPLE TMF1 0.014 TATA element modulatory factor 1 ZFC3H1 0.013 proline/serine-rich coiled-coil 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.