Guide to the Human Genome
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Name: CCDC78 Sequence: fasta or formatted (438aa) NCBI GI: 199559954
Description:

coiled-coil domain containing 78

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         50           3
 C cysteine            1.1          5           1
 D aspartate           3.9         17           2
 E glutamate           7.8         34           2
 F phenylalanine       1.6          7           1
 G glycine             7.1         31           2
 H histidine           4.6         20           2
 I isoleucine          2.1          9           1
 K lysine              3.7         16           2
 L leucine            11.0         48           2
 M methionine          0.5          2           1
 N asparagine          2.1          9           1
 P proline             5.7         25           2
 Q glutamine           8.4         37           2
 R arginine            8.4         37           2
 S serine              7.3         32           2
 T threonine           5.3         23           2
 V valine              5.0         22           2
 W tryptophan          2.3         10           1
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 78 
CNTROB                0.024   centrobin, centrosomal BRCA2 interacting protein is...
CNTROB                0.024   centrobin, centrosomal BRCA2 interacting protein iso...
GOLGA1                0.020   golgin 97 
CDC42BPG              0.020   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.019   GRB10 interacting GYF protein 2 isoform b 
CEP164                0.019   centrosomal protein 164kDa 
CCDC88B               0.019   coiled-coil domain containing 88 
PLEC1                 0.017   plectin 1 isoform 11 
PLEC1                 0.017   plectin 1 isoform 10 
PLEC1                 0.017   plectin 1 isoform 8 
PLEC1                 0.017   plectin 1 isoform 7 
PLEC1                 0.017   plectin 1 isoform 6 
PLEC1                 0.017   plectin 1 isoform 3 
PLEC1                 0.017   plectin 1 isoform 2 
PLEC1                 0.017   plectin 1 isoform 1 
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CROCC                 0.015   ciliary rootlet coiled-coil 
PPFIA2                0.014   PTPRF interacting protein alpha 2 
CXorf15               0.014   gamma-taxilin 
TTMA                  0.014   hypothetical protein LOC645369 
CCDC88C               0.014   DVL-binding protein DAPLE 
TMF1                  0.014   TATA element modulatory factor 1 
ZFC3H1                0.013   proline/serine-rich coiled-coil 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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