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Search of human proteins with 19924133
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
(339 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 664 0.0
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 335 4e-92
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 329 2e-90
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 119 5e-27
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 119 5e-27
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 119 5e-27
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 101 1e-21
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 81 1e-15
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 81 1e-15
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 81 1e-15
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 69 8e-12
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 65 1e-10
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 60 2e-09
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens] 37 0.025
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 35 0.073
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens] 35 0.096
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens] 35 0.096
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 32 0.62
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 32 0.62
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 32 0.62
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 32 0.62
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 31 1.8
gi|63053524 ubiquitin specific protease 1 [Homo sapiens] 30 3.1
gi|63053522 ubiquitin specific protease 1 [Homo sapiens] 30 3.1
gi|31543910 ubiquitin specific protease 1 [Homo sapiens] 30 3.1
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 664 bits (1713), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
Sbjct: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
Query: 61 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG 120
INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
Sbjct: 61 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG 120
Query: 121 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL 180
SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
Sbjct: 121 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL 180
Query: 181 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA 240
SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
Sbjct: 181 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA 240
Query: 241 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL 300
RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
Sbjct: 241 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL 300
Query: 301 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
Sbjct: 301 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 335 bits (858), Expect = 4e-92
Identities = 176/326 (53%), Positives = 227/326 (69%), Gaps = 3/326 (0%)
Query: 16 EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75
EEES Q I L++ GIN D+KKL+ G T++ + ++ L N+KG+SEAK DKI
Sbjct: 16 EEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 74
Query: 76 AEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 135
A KL+ GF TA E+ ++R + ITTGS+E DKLL GGIE+ +ITE FGEFRTGKTQ
Sbjct: 75 EAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 134
Query: 136 ICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 195
+ HTL VT QLP G GK ++IDTE TFRP+RL +A+R+ + VLDNV YARA+
Sbjct: 135 LSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 194
Query: 196 NTDHQTQLLYQASAMMVESR--YALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 253
++HQ +LL +A E + LLI+DS AL+R D+SGRGEL+ RQ LA+ L L
Sbjct: 195 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ 254
Query: 254 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICK 313
++++E+ VAV +TNQ+ A F ADPKKPIGG+I+AHASTTR+ LRKGRGE RI K
Sbjct: 255 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAK 314
Query: 314 IYDSPCLPEAEAMFAINADGVGDAKD 339
IYDSP +PE EA FAI A G+GDAK+
Sbjct: 315 IYDSPEMPENEATFAITAGGIGDAKE 340
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 329 bits (843), Expect = 2e-90
Identities = 166/173 (95%), Positives = 171/173 (98%)
Query: 167 RPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 226
+ +++L +AERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA
Sbjct: 70 KADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 129
Query: 227 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP 286
LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP
Sbjct: 130 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP 189
Query: 287 IGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
IGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
Sbjct: 190 IGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 242
Score = 149 bits (377), Expect = 3e-36
Identities = 76/80 (95%), Positives = 77/80 (96%)
Query: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
Sbjct: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
Query: 61 INIKGISEAKADKILAEAAK 80
INIKGISEAKADKIL A +
Sbjct: 61 INIKGISEAKADKILVMAER 80
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 119 bits (297), Expect = 5e-27
Identities = 93/338 (27%), Positives = 146/338 (43%), Gaps = 30/338 (8%)
Query: 27 RLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGF 86
+L++ G++ +L T + EL+ + G+S ++L ++
Sbjct: 5 KLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKM 64
Query: 87 TTATEFHQRRSEIIQ---ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 143
TA +RS ++T LD+ L GG+ GS+TE+ G GKTQ C +++
Sbjct: 65 QTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
Query: 144 CQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE----RYGLSGSDVL---DNVAYARAFN 196
LP + GG EG +YIDTE F ERL+ +AE RY + +L V R
Sbjct: 125 ATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELT 184
Query: 197 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG--RGELSARQMHLARFLRMLLR 254
D Q + ++ L+I+DS ++ R ++ +G L R LAR L
Sbjct: 185 CDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
Query: 255 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG------------------GNIIAHAS 296
LA+EF + V++TNQ+ + GA AD P GN +H+
Sbjct: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
Query: 297 TTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 334
TRL L+ E R I SP P ++ I +G+
Sbjct: 305 NTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 119 bits (297), Expect = 5e-27
Identities = 93/338 (27%), Positives = 146/338 (43%), Gaps = 30/338 (8%)
Query: 27 RLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGF 86
+L++ G++ +L T + EL+ + G+S ++L ++
Sbjct: 5 KLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKM 64
Query: 87 TTATEFHQRRSEIIQ---ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 143
TA +RS ++T LD+ L GG+ GS+TE+ G GKTQ C +++
Sbjct: 65 QTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
Query: 144 CQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE----RYGLSGSDVL---DNVAYARAFN 196
LP + GG EG +YIDTE F ERL+ +AE RY + +L V R
Sbjct: 125 ATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELT 184
Query: 197 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG--RGELSARQMHLARFLRMLLR 254
D Q + ++ L+I+DS ++ R ++ +G L R LAR L
Sbjct: 185 CDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
Query: 255 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG------------------GNIIAHAS 296
LA+EF + V++TNQ+ + GA AD P GN +H+
Sbjct: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
Query: 297 TTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 334
TRL L+ E R I SP P ++ I +G+
Sbjct: 305 NTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 119 bits (297), Expect = 5e-27
Identities = 93/338 (27%), Positives = 146/338 (43%), Gaps = 30/338 (8%)
Query: 27 RLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGF 86
+L++ G++ +L T + EL+ + G+S ++L ++
Sbjct: 5 KLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKM 64
Query: 87 TTATEFHQRRSEIIQ---ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 143
TA +RS ++T LD+ L GG+ GS+TE+ G GKTQ C +++
Sbjct: 65 QTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
Query: 144 CQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE----RYGLSGSDVL---DNVAYARAFN 196
LP + GG EG +YIDTE F ERL+ +AE RY + +L V R
Sbjct: 125 ATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELT 184
Query: 197 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG--RGELSARQMHLARFLRMLLR 254
D Q + ++ L+I+DS ++ R ++ +G L R LAR L
Sbjct: 185 CDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
Query: 255 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG------------------GNIIAHAS 296
LA+EF + V++TNQ+ + GA AD P GN +H+
Sbjct: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
Query: 297 TTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 334
TRL L+ E R I SP P ++ I +G+
Sbjct: 305 NTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 101 bits (251), Expect = 1e-21
Identities = 98/332 (29%), Positives = 149/332 (44%), Gaps = 44/332 (13%)
Query: 40 KLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILA----EAAKLVPMGFTTATEFHQR 95
KL AGF T E + EL GIS+A+A + L E P + +E H++
Sbjct: 26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPR-YAGTSESHKK 84
Query: 96 RS--EIIQ-------ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQL 146
+ E+++ I T LD +L GG+ TE+ G GKTQ+C LAV Q+
Sbjct: 85 CTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQI 144
Query: 147 PIDRGGGEGKAMYIDTEGTFRPERLLAVA----------------ERYGLSGSD-VLDNV 189
P GG G+A++IDTEG+F +R++ +A E + + D LDN+
Sbjct: 145 PECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNI 204
Query: 190 -AYARAFNTDHQTQLLYQA----SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMH 244
++ F T+LL Q + S+ L+IVD +R D +LS R
Sbjct: 205 LSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRTRL 261
Query: 245 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304
L + ++ LA+ +AV++TNQ+ ++D P G HA+T RL
Sbjct: 262 LNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALGESWGHAATIRLIFHW 317
Query: 305 GRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
R + R+ +Y SP E +F I G D
Sbjct: 318 DR-KQRLATLYKSPSQKECTVLFQIKPQGFRD 348
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 81.3 bits (199), Expect = 1e-15
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 30/336 (8%)
Query: 28 LEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA-KLVPMGF 86
L+ +N + +++A +V+ V + +L + +S + +L A+ L
Sbjct: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
Query: 87 TTATEFHQRRSEII----QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 142
TA + HQ++ +++ G LD LL+GG+ ITE+ G GKTQ+ L +
Sbjct: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
Query: 143 TCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV----LDNVAYARAFNTD 198
Q P GG E A+YI TE F +RL + + +DV L + + +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIE 182
Query: 199 HQTQ-------LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRM 251
H + + ++ L+++DS A +R ++ + + R HL
Sbjct: 183 HVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQSLGAT 241
Query: 252 LLRLADEFGVAVVITNQVVAQVD------GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 305
L L+ F V+ NQV ++ G F + P G A+ RL +
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRL 301
Query: 306 RGE-------TRICKIYDSPCLPEAEAMFAINADGV 334
R E R ++ +P LP + + I+A+GV
Sbjct: 302 REEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 81.3 bits (199), Expect = 1e-15
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 30/336 (8%)
Query: 28 LEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA-KLVPMGF 86
L+ +N + +++A +V+ V + +L + +S + +L A+ L
Sbjct: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
Query: 87 TTATEFHQRRSEII----QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 142
TA + HQ++ +++ G LD LL+GG+ ITE+ G GKTQ+ L +
Sbjct: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
Query: 143 TCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV----LDNVAYARAFNTD 198
Q P GG E A+YI TE F +RL + + +DV L + + +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIE 182
Query: 199 HQTQ-------LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRM 251
H + + ++ L+++DS A +R ++ + + R HL
Sbjct: 183 HVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQSLGAT 241
Query: 252 LLRLADEFGVAVVITNQVVAQVD------GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 305
L L+ F V+ NQV ++ G F + P G A+ RL +
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRL 301
Query: 306 RGE-------TRICKIYDSPCLPEAEAMFAINADGV 334
R E R ++ +P LP + + I+A+GV
Sbjct: 302 REEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 81.3 bits (199), Expect = 1e-15
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 30/336 (8%)
Query: 28 LEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA-KLVPMGF 86
L+ +N + +++A +V+ V + +L + +S + +L A+ L
Sbjct: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
Query: 87 TTATEFHQRRSEII----QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 142
TA + HQ++ +++ G LD LL+GG+ ITE+ G GKTQ+ L +
Sbjct: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
Query: 143 TCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV----LDNVAYARAFNTD 198
Q P GG E A+YI TE F +RL + + +DV L + + +
Sbjct: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIE 182
Query: 199 HQTQ-------LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRM 251
H + + ++ L+++DS A +R ++ + + R HL
Sbjct: 183 HVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQSLGAT 241
Query: 252 LLRLADEFGVAVVITNQVVAQVD------GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 305
L L+ F V+ NQV ++ G F + P G A+ RL +
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRL 301
Query: 306 RGE-------TRICKIYDSPCLPEAEAMFAINADGV 334
R E R ++ +P LP + + I+A+GV
Sbjct: 302 REEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 68.6 bits (166), Expect = 8e-12
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 24/221 (10%)
Query: 92 FHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 151
+ + ++ ++TG LDKLL G+ TG +TE+ G +GKTQ+C +A
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AH 126
Query: 152 GGEGKAMYIDTEGTFRPERLLAVAE---RYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 208
G + +Y+D+ G RLL + + + ++ L + AF+ +L +
Sbjct: 127 GLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
Query: 209 AMMVE------SRYALLIVDSATALYRTDYSG-RGELSARQMHLARFLRMLLRLADEFGV 261
+ + +++VDS TA+ G + E A M LAR L+ L R + G+
Sbjct: 187 GTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGM 243
Query: 262 AVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYL 302
AVV+TN + D + KP G + +TR+ L
Sbjct: 244 AVVVTNHITRDRDSGRL------KPALGRSWSFVPSTRILL 278
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 64.7 bits (156), Expect = 1e-10
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 106 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 165
+ LDKLL G+ TG +TE+ G +GKTQ+C +A G + +Y+D+ G
Sbjct: 106 TSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AHGLQQNVLYVDSNGG 160
Query: 166 FRPERLLAVAE---RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVE------SRY 216
RLL + + + ++ L + AF+ +L + + +
Sbjct: 161 LTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTV 220
Query: 217 ALLIVDSATALYRTDYSG-RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG 275
+++VDS TA+ G + E A M LAR L+ L R + G+AVV+TN + D
Sbjct: 221 KVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDS 277
Query: 276 AAMFAADPKKPIGGNIIAHASTTRLYL 302
+ KP G + +TR+ L
Sbjct: 278 GRL------KPALGRSWSFVPSTRILL 298
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 60.5 bits (145), Expect = 2e-09
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG 179
G I E G TGKT++ + L C LP GG E + ++IDT+ F RL+ + E
Sbjct: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
Query: 180 LSGSDVLDNVAYARAF-----NTDHQTQLLYQASAMMV-ESRYALLIVDSATALYRTDYS 233
S+ + R F ++ H LY +M LLI+DS +A Y D
Sbjct: 101 SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRV 160
Query: 234 GRGE-LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 272
GE ++ ++ L + + L +L +++ + + T Q + Q
Sbjct: 161 NGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQTIMQ 200
>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
Length = 216
Score = 37.0 bits (84), Expect = 0.025
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 174 VAERYGLS-GSDVLDNVAYARAFNTDHQTQLLYQASAMMVES------RYALLIVDSATA 226
VA++ GLS ++ L + AF+ +L + + + +++VDS TA
Sbjct: 39 VAQKCGLSYKAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTA 98
Query: 227 LYRTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKK 285
+ G+ E A M LAR L+ L R + G+AVV+TN + D + K
Sbjct: 99 VVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSGRL------K 149
Query: 286 PIGGNIIAHASTTRLYL 302
P G + +TR+ L
Sbjct: 150 PALGRSWSFVPSTRILL 166
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 35.4 bits (80), Expect = 0.073
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 40 KLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILA----EAAKLVPMGFTTATEFHQR 95
KL AGF T E + EL GIS+A+A + L E P + +E H++
Sbjct: 26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPR-YAGTSESHKK 84
Query: 96 RS--EIIQ-------ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
+ E+++ I T LD +L GG+ TE+ G GKTQ+
Sbjct: 85 CTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQL 134
>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
Length = 1018
Score = 35.0 bits (79), Expect = 0.096
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 17/192 (8%)
Query: 49 VEAVAYAPKKELINIKG-ISEAKADKILAE----AAKLVPMGFTTATEFHQRRSEIIQIT 103
++ +A AP E+ +K I AK +++ E AA ++ TE+ S I+
Sbjct: 406 LKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWE 465
Query: 104 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT-----CQLPIDRGGGEGKAM 158
GS E++ + + G I F E GK TL +T PI+ G+
Sbjct: 466 DGSLEINNITRND---GGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVGENA 522
Query: 159 YIDTEGTFRPERLLAVAERYGLSGSDV-LDNVAYARAFNTDHQTQLLYQASAMMVESRY- 216
+ +F P L + D +N+ Y R F D +LL + + + RY
Sbjct: 523 TMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKHAGRYT 582
Query: 217 --ALLIVDSATA 226
A IVD+++A
Sbjct: 583 CTAQTIVDNSSA 594
>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
Length = 1007
Score = 35.0 bits (79), Expect = 0.096
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 17/192 (8%)
Query: 49 VEAVAYAPKKELINIKG-ISEAKADKILAE----AAKLVPMGFTTATEFHQRRSEIIQIT 103
++ +A AP E+ +K I AK +++ E AA ++ TE+ S I+
Sbjct: 395 LKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWE 454
Query: 104 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT-----CQLPIDRGGGEGKAM 158
GS E++ + + G I F E GK TL +T PI+ G+
Sbjct: 455 DGSLEINNITRND---GGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVGENA 511
Query: 159 YIDTEGTFRPERLLAVAERYGLSGSDV-LDNVAYARAFNTDHQTQLLYQASAMMVESRY- 216
+ +F P L + D +N+ Y R F D +LL + + + RY
Sbjct: 512 TMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKHAGRYT 571
Query: 217 --ALLIVDSATA 226
A IVD+++A
Sbjct: 572 CTAQTIVDNSSA 583
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 32.3 bits (72), Expect = 0.62
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 22 PQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81
P +S L + ++K+EE T E + A +EL + + ++ AE KL
Sbjct: 281 PNSVSELSLASLTEK-IQKMEENHHSTAEELQ-ATLQELSD----QQQMVQELTAENEKL 334
Query: 82 VPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGE 128
V T FHQ R Q++ +++L LLQ ++ T G+
Sbjct: 335 VDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGK 381
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 32.3 bits (72), Expect = 0.62
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 22 PQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81
P +S L + ++K+EE T E + A +EL + + ++ AE KL
Sbjct: 281 PNSVSELSLASLTEK-IQKMEENHHSTAEELQ-ATLQELSD----QQQMVQELTAENEKL 334
Query: 82 VPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGE 128
V T FHQ R Q++ +++L LLQ ++ T G+
Sbjct: 335 VDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGK 381
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 32.3 bits (72), Expect = 0.62
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 22 PQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81
P +S L + ++K+EE T E + A +EL + + ++ AE KL
Sbjct: 362 PNSVSELSLASLTEK-IQKMEENHHSTAEELQ-ATLQELSD----QQQMVQELTAENEKL 415
Query: 82 VPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGE 128
V T FHQ R Q++ +++L LLQ ++ T G+
Sbjct: 416 VDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGK 462
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 32.3 bits (72), Expect = 0.62
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 22 PQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81
P +S L + ++K+EE T E + A +EL + + ++ AE KL
Sbjct: 362 PNSVSELSLASLTEK-IQKMEENHHSTAEELQ-ATLQELSD----QQQMVQELTAENEKL 415
Query: 82 VPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGE 128
V T FHQ R Q++ +++L LLQ ++ T G+
Sbjct: 416 VDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGK 462
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 30.8 bits (68), Expect = 1.8
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 24/146 (16%)
Query: 16 EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75
E++S + +S LE+ +++ +L +G HTVEA A + L ++ + D++
Sbjct: 488 EQDSQVSEILSALERRVLDSEGQLRLVGSGLHTVEAAGEARQATLEGLQEVVGRLQDRVD 547
Query: 76 AEAAKLVPMGFTTATEFHQRRSEIIQITTGS-KELDKLLQ-----GGIETGSITEMFGEF 129
A+ TA EF R + +T +L+ LLQ G G + E G
Sbjct: 548 AQD--------ETAAEFTLR----LNLTAARLGQLEGLLQAHGDEGCGACGGVQEELGRL 595
Query: 130 RTGKTQICHTLAVTCQLPIDRGGGEG 155
R G + +C L RG G G
Sbjct: 596 RDGVER------CSCPLLPPRGPGAG 615
>gi|63053524 ubiquitin specific protease 1 [Homo sapiens]
Length = 785
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 22 PQPISRLEQCGI--NANDVKKLEEAGFHTVEAVAYAPKK-ELINIKGISEAKADKILAEA 78
P+P++ E G+ N ND + G +T + K E I + G ++KAD L
Sbjct: 624 PEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNK 683
Query: 79 AKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG 120
A +TA F + R+ TTG+ E D+ + +TG
Sbjct: 684 ASNPDKVASTA--FAENRNSETSDTTGTHESDRNKESSDQTG 723
>gi|63053522 ubiquitin specific protease 1 [Homo sapiens]
Length = 785
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 22 PQPISRLEQCGI--NANDVKKLEEAGFHTVEAVAYAPKK-ELINIKGISEAKADKILAEA 78
P+P++ E G+ N ND + G +T + K E I + G ++KAD L
Sbjct: 624 PEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNK 683
Query: 79 AKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG 120
A +TA F + R+ TTG+ E D+ + +TG
Sbjct: 684 ASNPDKVASTA--FAENRNSETSDTTGTHESDRNKESSDQTG 723
>gi|31543910 ubiquitin specific protease 1 [Homo sapiens]
Length = 785
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 22 PQPISRLEQCGI--NANDVKKLEEAGFHTVEAVAYAPKK-ELINIKGISEAKADKILAEA 78
P+P++ E G+ N ND + G +T + K E I + G ++KAD L
Sbjct: 624 PEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNK 683
Query: 79 AKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG 120
A +TA F + R+ TTG+ E D+ + +TG
Sbjct: 684 ASNPDKVASTA--FAENRNSETSDTTGTHESDRNKESSDQTG 723
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,153,515
Number of Sequences: 37866
Number of extensions: 444829
Number of successful extensions: 861
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 26
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.