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Search of human proteins with 19923997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923997 zinc finger, MYND domain containing 19 [Homo
sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens] 483 e-137
gi|12232401 SET and MYND domain containing 3 [Homo sapiens] 46 2e-05
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 46 3e-05
gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] 46 3e-05
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 43 2e-04
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 43 2e-04
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 43 2e-04
gi|28329422 acute myelogenous leukemia 1 translocation 1 protein... 41 0.001
gi|28329419 acute myelogenous leukemia 1 translocation 1 protein... 41 0.001
gi|28329416 acute myelogenous leukemia 1 translocation 1 protein... 41 0.001
gi|4757916 acute myelogenous leukemia 1 translocation 1 protein ... 41 0.001
gi|38093643 SET and MYND domain containing 1 [Homo sapiens] 40 0.001
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 40 0.002
gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 40 0.002
gi|38505161 tudor domain containing 1 [Homo sapiens] 39 0.003
gi|13489073 egl nine homolog 1 [Homo sapiens] 36 0.031
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 35 0.040
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] 35 0.069
gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo sa... 35 0.069
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 34 0.090
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 34 0.090
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 34 0.090
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 33 0.20
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 33 0.20
gi|148762978 similar to CG15216-PA [Homo sapiens] 32 0.58
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 31 0.76
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 31 0.76
gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Hom... 30 1.3
gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens] 30 2.2
gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens] 30 2.2
>gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens]
Length = 227
Score = 483 bits (1243), Expect = e-137
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MTDFKLGIVRLGRVAGKTKYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFAYAFDKNR 60
MTDFKLGIVRLGRVAGKTKYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFAYAFDKNR
Sbjct: 1 MTDFKLGIVRLGRVAGKTKYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFAYAFDKNR 60
Query: 61 GRGSGRLLHELLWERHRGGVAPGFQVVHLNAVTVDNRLDNLQLVPWGWRPKAEETSSKQR 120
GRGSGRLLHELLWERHRGGVAPGFQVVHLNAVTVDNRLDNLQLVPWGWRPKAEETSSKQR
Sbjct: 61 GRGSGRLLHELLWERHRGGVAPGFQVVHLNAVTVDNRLDNLQLVPWGWRPKAEETSSKQR 120
Query: 121 EQSLYWLAIQQLPTDPIEEQFPVLNVTRYYNANGDVVEEEENSCTYYECHYPPCTVIEKQ 180
EQSLYWLAIQQLPTDPIEEQFPVLNVTRYYNANGDVVEEEENSCTYYECHYPPCTVIEKQ
Sbjct: 121 EQSLYWLAIQQLPTDPIEEQFPVLNVTRYYNANGDVVEEEENSCTYYECHYPPCTVIEKQ 180
Query: 181 LREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPER 227
LREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPER
Sbjct: 181 LREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPER 227
>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
Length = 369
Score = 46.2 bits (108), Expect = 2e-05
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHCR 213
C +C+VA+YC ++CQ+K WP HK+ C+
Sbjct: 3 CSQCRVAKYCSAKCQKKAWPDHKRECK 29
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 45.8 bits (107), Expect = 3e-05
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 157 VEEEENSCTYYECHYPPCTVIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKKHC 212
V E N C Y C ++ L + CGRC+ A YC +CQ++DWP HK C
Sbjct: 45 VNERGNHCEY-------CFTRKEGLSK---CGRCKQAFYCNVECQKEDWPMHKLEC 90
>gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]
Length = 460
Score = 45.8 bits (107), Expect = 3e-05
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHCRE 214
C RC+ YCG +CQ+ DWPAH++ C+E
Sbjct: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQE 151
>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1a [Homo sapiens]
Length = 575
Score = 43.1 bits (100), Expect = 2e-04
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C +ARYCGS CQ KDW H + C
Sbjct: 489 CSGCNIARYCGSFCQHKDWERHHRLC 514
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 43.1 bits (100), Expect = 2e-04
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C +ARYCGS CQ KDW H + C
Sbjct: 509 CSGCNIARYCGSFCQHKDWERHHRLC 534
>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1b [Homo sapiens]
Length = 604
Score = 43.1 bits (100), Expect = 2e-04
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C +ARYCGS CQ KDW H + C
Sbjct: 518 CSGCNIARYCGSFCQHKDWERHHRLC 543
>gi|28329422 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C ARYCGS CQ KDW H C
Sbjct: 489 CSGCNTARYCGSFCQHKDWEKHHHIC 514
>gi|28329419 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C ARYCGS CQ KDW H C
Sbjct: 489 CSGCNTARYCGSFCQHKDWEKHHHIC 514
>gi|28329416 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8b [Homo sapiens]
Length = 604
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C ARYCGS CQ KDW H C
Sbjct: 526 CSGCNTARYCGSFCQHKDWEKHHHIC 551
>gi|4757916 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8a [Homo sapiens]
Length = 577
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C ARYCGS CQ KDW H C
Sbjct: 499 CSGCNTARYCGSFCQHKDWEKHHHIC 524
>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
Length = 490
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 174 CTVIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKR 217
C K+ + + CG+C+ A YC CQ+ W HK C KR
Sbjct: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKR 95
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 39.7 bits (91), Expect = 0.002
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C ARYCGS CQ +DW H C
Sbjct: 567 CSGCNAARYCGSFCQHRDWEKHHHVC 592
>gi|28872805 myeloid translocation gene on chromosome 16 isoform
MTG16b [Homo sapiens]
Length = 567
Score = 39.7 bits (91), Expect = 0.002
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C ARYCGS CQ +DW H C
Sbjct: 481 CSGCNAARYCGSFCQHRDWEKHHHVC 506
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 39.3 bits (90), Expect = 0.003
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELE 224
C +C+ YC + CQ++DW AH CR +P H+LE
Sbjct: 181 CSQCKQTYYCSTACQRRDWSAHSIVCRP-VQPNFHKLE 217
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 35.8 bits (81), Expect = 0.031
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 174 CTVIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPER 227
C +E LR C RC+ + YC + Q++DW HK C+ + H + P +
Sbjct: 24 CGKMENLLR----CSRCRSSFYCCKEHQRQDWKKHKLVCQGSEGALGHGVGPHQ 73
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 35.4 bits (80), Expect = 0.040
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHCR 213
C RC YC CQ+ WP HK CR
Sbjct: 808 CTRCYRVGYCNQLCQKTHWPDHKGLCR 834
>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
Length = 440
Score = 34.7 bits (78), Expect = 0.069
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C RCQ YC +CQ K W H K C
Sbjct: 405 CSRCQNEWYCCRECQVKHWEKHGKTC 430
>gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo
sapiens]
Length = 441
Score = 34.7 bits (78), Expect = 0.069
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHE 222
C C++ YC CQ+ W HKK C+ K ++ +
Sbjct: 332 CSVCKMVIYCDQTCQKTHWFTHKKICKNLKDIYEKQ 367
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 190 CQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPE 226
C YC CQQ WP H K C + Q E + E
Sbjct: 989 CWNTSYCDYPCQQAHWPEHMKSCTQSATAPQQEADAE 1025
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 190 CQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPE 226
C YC CQQ WP H K C + Q E + E
Sbjct: 1014 CWNTSYCDYPCQQAHWPEHMKSCTQSATAPQQEADAE 1050
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 34.3 bits (77), Expect = 0.090
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 190 CQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPE 226
C YC CQQ WP H K C + Q E + E
Sbjct: 1014 CWNTSYCDYPCQQAHWPEHMKSCTQSATAPQQEADAE 1050
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 33.1 bits (74), Expect = 0.20
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C YC + CQ+KDW H+ C
Sbjct: 515 CTGCHKVNYCSTFCQRKDWKDHQHIC 540
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 0.20
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 187 CGRCQVARYCGSQCQQKDWPAHKKHC 212
C C YC + CQ+KDW H+ C
Sbjct: 376 CTGCHKVNYCSTFCQRKDWKDHQHIC 401
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 31.6 bits (70), Expect = 0.58
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 184 FNICGRCQVARYCGSQCQQKDWPAHKKHC 212
F C C YC C+++DW AHK C
Sbjct: 683 FKSCHSCYTY-YCSRLCRREDWDAHKARC 710
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 31.2 bits (69), Expect = 0.76
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 190 CQVARYCGSQCQQKDWPA-HKKHCRERK 216
C YC +CQQ+ W A HK+ CR ++
Sbjct: 575 CWNTSYCSIKCQQEHWHAEHKRTCRRKR 602
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 31.2 bits (69), Expect = 0.76
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 190 CQVARYCGSQCQQKDWPA-HKKHCRERK 216
C YC +CQQ+ W A HK+ CR ++
Sbjct: 575 CWNTSYCSIKCQQEHWHAEHKRTCRRKR 602
>gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Homo
sapiens]
Length = 365
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 186 ICGRCQVARYCGSQCQQKDWPA-HKKHCR 213
+C C V YCG Q+ DW + H+K C+
Sbjct: 27 VCAACTVTYYCGVVHQKADWDSIHEKICQ 55
>gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens]
Length = 228
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 187 CGRCQVARYCGSQCQQKDWP-AHKKHCRE 214
C RC A YC + Q DW HK+ C +
Sbjct: 146 CSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
>gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens]
Length = 344
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 187 CGRCQVARYCGSQCQQKDWP-AHKKHCRE 214
C RC A YC + Q DW HK+ C +
Sbjct: 146 CSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,767,541
Number of Sequences: 37866
Number of extensions: 464931
Number of successful extensions: 897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 49
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.