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Search of human proteins with 19923796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923796 NMD3 homolog [Homo sapiens]
(503 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923796 NMD3 homolog [Homo sapiens] 1031 0.0
gi|31542729 DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Homo sapi... 35 0.21
gi|34878777 ring finger protein 20 [Homo sapiens] 34 0.35
gi|38569484 kinesin family member 21A [Homo sapiens] 34 0.35
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.61
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 33 0.61
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 33 0.61
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 32 1.0
gi|195927017 phosphatidylinositol transfer protein, membrane-ass... 32 1.0
gi|195927015 phosphatidylinositol transfer protein, membrane-ass... 32 1.0
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 32 1.3
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 32 1.3
gi|34740327 zinc finger protein 804A [Homo sapiens] 32 1.8
gi|46049063 exportin 6 [Homo sapiens] 32 1.8
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 31 2.3
gi|188528616 testis specific, 10 [Homo sapiens] 31 2.3
gi|13376858 testis specific, 10 [Homo sapiens] 31 2.3
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 31 2.3
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 31 2.3
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 31 2.3
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 31 2.3
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 31 2.3
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 31 2.3
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 31 3.0
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 31 3.0
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 31 3.0
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 31 3.0
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 30 3.9
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 30 3.9
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 30 3.9
>gi|19923796 NMD3 homolog [Homo sapiens]
Length = 503
Score = 1031 bits (2667), Expect = 0.0
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQR 60
MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQR
Sbjct: 1 MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQR 60
Query: 61 YFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEV 120
YFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEV
Sbjct: 61 YFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEV 120
Query: 121 MNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYG 180
MNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYG
Sbjct: 121 MNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYG 180
Query: 181 MHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKS 240
MHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKS
Sbjct: 181 MHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKS 240
Query: 241 TFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFW 300
TFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFW
Sbjct: 241 TFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFW 300
Query: 301 SHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYF 360
SHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYF
Sbjct: 301 SHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYF 360
Query: 361 CRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWK 420
CRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWK
Sbjct: 361 CRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWK 420
Query: 421 LKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISL 480
LKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISL
Sbjct: 421 LKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISL 480
Query: 481 AEMLEDLHISQDATGEEGASMLT 503
AEMLEDLHISQDATGEEGASMLT
Sbjct: 481 AEMLEDLHISQDATGEEGASMLT 503
>gi|31542729 DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Homo
sapiens]
Length = 779
Score = 34.7 bits (78), Expect = 0.21
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 19/163 (11%)
Query: 57 QCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVR-LVDAGFVWTEPHSKRLKVKLT 115
Q +R F PP I+ + S + A L + +R +VD GFV H+ RL + +
Sbjct: 326 QQRRIFLPPPPGIRKCVISTNISATSLT-----IDGIRYVVDGGFVKQLNHNPRLGLDIL 380
Query: 116 IQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQL 175
+ LQ+ G C R+ +KDFW + K+T L +
Sbjct: 381 EVVPISKSEALQR----SGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRT--SLTSV 434
Query: 176 ILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPC 218
+L TL+ IHD + F Y + + ++E L+ C
Sbjct: 435 VL-------TLKCLAIHDVIRFPYLDPPNERLILEALKQLYQC 470
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 404 IKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSA 463
IK D +R+R R K +E RERE + + ER+ Q E +E RDSA
Sbjct: 560 IKSKRDEEERERERREKEREREREREK-EKEREREKQKLKESEKE-----------RDSA 607
Query: 464 IPVESDTDDEGAPRISLAEMLEDLHISQDATGEEGASM 501
E D+G R AE+++ L I E M
Sbjct: 608 KDKEKGKHDDG--RKKEAEIIKQLKIELKKAQESQKEM 643
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 394 NSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDE--- 450
+ + + + L KK ++ KR+ +R K K +A + +N DTD E++ + + + E +E
Sbjct: 531 DKETIEIIDLAKKDLEKLKRKEKR--KKKSVAGKEDNTDTDQEKKEEKGVSERENNELEV 588
Query: 451 AIRKNVNIYRDSAIPVESDTDD 472
+ V+ + D E + DD
Sbjct: 589 EESQEVSDHEDEEEEEEEEEDD 610
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 33.1 bits (74), Expect = 0.61
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 404 IKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYR 460
I++ ++ + Q ++ W+ +E E+E + +++RQ Q+ E ++E IR+ I+R
Sbjct: 425 IREQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQE--EMWRQEEKIREQEEIWR 479
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 33.1 bits (74), Expect = 0.61
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 421 LKELARERENMDTDDERQYQ-DFLEDLEEDE------------AIRKNVNI-YRDSAIPV 466
L+ + +E E D +DE + DF ED++ DE + + + N+ Y+D PV
Sbjct: 214 LENIEKEEERKDDNDEEEEDIDFFEDIDSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPV 273
Query: 467 ESDTDDEGAPRISLAEMLEDLHISQDATGE 496
ESD D L ED I+++ E
Sbjct: 274 ESDEDITNVHDDELDSNKEDDEIAEEEAEE 303
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 33.1 bits (74), Expect = 0.61
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 419 WKLKELARERENMDTDDERQYQDFLEDLEE-DEAIRKNVNIYRDSAI------PVESDTD 471
W+++ +AR+ + +DDE + D EDL + +E K++ + + + P DT
Sbjct: 328 WRMQSIARDSDE-SSDDE--FFDAHEDLSDTEEMFPKDITKWSSNDLMDKIESPEPEDTQ 384
Query: 472 D----EGAPRISLAEMLEDLHISQDATGE 496
D +GAP +A +E L+I +D +
Sbjct: 385 DGLYRQGAPEFRVASSVEQLNIIEDEVSQ 413
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 32.3 bits (72), Expect = 1.0
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 404 IKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYR 460
I++ ++ + Q + W+ +E E+E + +++RQ Q+ E ++E IR+ I+R
Sbjct: 486 IREQEEKIREQEEKMWRQEEKIHEQEKIREEEKRQEQE--EMWRQEEKIREQEEIWR 540
>gi|195927017 phosphatidylinositol transfer protein,
membrane-associated isoform b [Homo sapiens]
Length = 1243
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 414 QRRRNWKLKELARERENMDTDDERQYQDFLEDLEE---DEAIRKNVNIYRDS-AIPVESD 469
Q W+++ +AR+ EN ++ + D EE E + N N + D+ A PVE++
Sbjct: 328 QSLSEWRMQNIARDSENSSEEEFFDAHEGFSDSEEVFPKEMTKWNSNDFIDAFASPVEAE 387
Query: 470 TDDEGAPRISLAEMLED-LHISQDATGEEGASML 502
E P A+ +ED +D+ G +GA L
Sbjct: 388 GTPE--PGAEAAKGIEDGAQAPRDSEGLDGAGEL 419
>gi|195927015 phosphatidylinositol transfer protein,
membrane-associated isoform a [Homo sapiens]
Length = 1244
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 414 QRRRNWKLKELARERENMDTDDERQYQDFLEDLEE---DEAIRKNVNIYRDS-AIPVESD 469
Q W+++ +AR+ EN ++ + D EE E + N N + D+ A PVE++
Sbjct: 328 QSLSEWRMQNIARDSENSSEEEFFDAHEGFSDSEEVFPKEMTKWNSNDFIDAFASPVEAE 387
Query: 470 TDDEGAPRISLAEMLED-LHISQDATGEEGASML 502
E P A+ +ED +D+ G +GA L
Sbjct: 388 GTPE--PGAEAAKGIEDGAQAPRDSEGLDGAGEL 419
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 32.0 bits (71), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 404 IKKSYDRTKRQRRRNWKLKELARERENMDTDDERQY----------QDFLEDLEEDEAIR 453
IK+ R+ R RN K K+ +ER+++ ER+ +D E LE++
Sbjct: 515 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 574
Query: 454 KNVNIYRDSAIPVESDTDDEGAPR 477
K ++ V + DD+ APR
Sbjct: 575 KEKEHNKEPDSSVSKEVDDKDAPR 598
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 32.0 bits (71), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 404 IKKSYDRTKRQRRRNWKLKELARERENMDTDDERQY----------QDFLEDLEEDEAIR 453
IK+ R+ R RN K K+ +ER+++ ER+ +D E LE++
Sbjct: 399 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 458
Query: 454 KNVNIYRDSAIPVESDTDDEGAPR 477
K ++ V + DD+ APR
Sbjct: 459 KEKEHNKEPDSSVSKEVDDKDAPR 482
>gi|34740327 zinc finger protein 804A [Homo sapiens]
Length = 1209
Score = 31.6 bits (70), Expect = 1.8
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 407 SYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIPV 466
SYD +QR + K +E AR + DER+ + L+ L + +RK S
Sbjct: 78 SYDHAHKQRLKELKQREFARNVASKSRKDERKQEKALQRLHKLAELRKETVCAPGSGPMF 137
Query: 467 ESDTDD--EGAPRISLAEMLEDLHISQD 492
+S T E IS +++ ++ QD
Sbjct: 138 KSTTVTVRENCNEISQRVVVDSVNNQQD 165
>gi|46049063 exportin 6 [Homo sapiens]
Length = 1125
Score = 31.6 bits (70), Expect = 1.8
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 54 FCKQCQRYFQPPGTWIQCALESRELLALCLKKI-------KAPLSKVRLVDAGFVWTEPH 106
F K Q Q PG + L S ++ALC++++ +P K L + F T H
Sbjct: 892 FLKILQVVVQEPGQVFKPFLPS--IIALCMEQVYPIIAERPSPDVKAELFELLFR-TLHH 948
Query: 107 SKRLKVKLTIQKEVMNGAILQQV-------FVVDYVVQSQMCGDCHRVEAKDFWKAVIQV 159
+ R K T+ V G +Q+ ++ QS + D H + F+ +
Sbjct: 949 NWRYFFKSTVLASVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNT 1008
Query: 160 RQKTLHKKTF 169
+QK HKK F
Sbjct: 1009 KQKLYHKKIF 1018
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 31.2 bits (69), Expect = 2.3
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 404 IKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYR 460
I++ ++ + Q ++ W+ +E E+E + +++RQ Q+ E ++E I + I+R
Sbjct: 439 IREQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQE--EMWRQEEKIHEQEEIWR 493
>gi|188528616 testis specific, 10 [Homo sapiens]
Length = 698
Score = 31.2 bits (69), Expect = 2.3
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 401 VVLIKKSYDRTKRQR-RRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVN 457
+++ ++ R +RQ N +L ++ARER+ + D++ + F + +E++A+ K +N
Sbjct: 319 LIVCEQDVSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLN 376
>gi|13376858 testis specific, 10 [Homo sapiens]
Length = 698
Score = 31.2 bits (69), Expect = 2.3
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 401 VVLIKKSYDRTKRQR-RRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVN 457
+++ ++ R +RQ N +L ++ARER+ + D++ + F + +E++A+ K +N
Sbjct: 319 LIVCEQDVSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLN 376
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 31.2 bits (69), Expect = 2.3
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 385 LNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDER--QYQDF 442
L E V M D + L K+Y R+KRQ R ++ E +++ ++ + +R ++Q++
Sbjct: 392 LRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEY 451
Query: 443 LEDL 446
L +
Sbjct: 452 LNSI 455
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 31.2 bits (69), Expect = 2.3
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 385 LNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDER--QYQDF 442
L E V M D + L K+Y R+KRQ R ++ E +++ ++ + +R ++Q++
Sbjct: 392 LRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEY 451
Query: 443 LEDL 446
L +
Sbjct: 452 LNSI 455
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 31.2 bits (69), Expect = 2.3
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 400 DVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAI--RKNVN 457
DV IKK + K + KLK+ + EN D DD+ + + +E+E + RKN
Sbjct: 476 DVNSIKKEIEEEKTED----KLKD--NDTENKDVDDDYE----TAEKKENELLLGRKNTP 525
Query: 458 IYRDSAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEE 497
++ I + D+D + ++ E+ D+ GEE
Sbjct: 526 KQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 31.2 bits (69), Expect = 2.3
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 400 DVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAI--RKNVN 457
DV IKK + K + KLK+ + EN D DD+ + + +E+E + RKN
Sbjct: 476 DVNSIKKEIEEEKTED----KLKD--NDTENKDVDDDYE----TAEKKENELLLGRKNTP 525
Query: 458 IYRDSAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEE 497
++ I + D+D + ++ E+ D+ GEE
Sbjct: 526 KQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 31.2 bits (69), Expect = 2.3
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 400 DVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAI--RKNVN 457
DV IKK + K + KLK+ + EN D DD+ + + +E+E + RKN
Sbjct: 476 DVNSIKKEIEEEKTED----KLKD--NDTENKDVDDDYE----TAEKKENELLLGRKNTP 525
Query: 458 IYRDSAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEE 497
++ I + D+D + ++ E+ D+ GEE
Sbjct: 526 KQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 31.2 bits (69), Expect = 2.3
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 406 KSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIP 465
+ +DR + + R + KE RERE + + ER+ + E E E R+ RD
Sbjct: 731 RDHDRERERERERDREKEREREREERERERERERERERERERERERARE-----RDKERE 785
Query: 466 VESDTDDEGAPRISLAEMLEDLHISQDATGEEG 498
+ D +D+ R E E+ I +D +G
Sbjct: 786 RQRDWEDKDKGRDDRREKREE--IREDRNPRDG 816
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 422 KELARERENMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDD 472
+E+ ++ EN+D D E+Q +D +L + + +RK VN Y D+A + D D+
Sbjct: 1304 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVN-YNDAA---QEDQDN 1359
Query: 473 EGAPRISLAEMLED 486
+ + E ED
Sbjct: 1360 QSEYSVGSEEEDED 1373
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 422 KELARERENMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDD 472
+E+ ++ EN+D D E+Q +D +L + + +RK VN Y D+A + D D+
Sbjct: 1304 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVN-YNDAA---QEDQDN 1359
Query: 473 EGAPRISLAEMLED 486
+ + E ED
Sbjct: 1360 QSEYSVGSEEEDED 1373
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 422 KELARERENMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDD 472
+E+ ++ EN+D D E+Q +D +L + + +RK VN Y D+A + D D+
Sbjct: 1363 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVN-YNDAA---QEDQDN 1418
Query: 473 EGAPRISLAEMLED 486
+ + E ED
Sbjct: 1419 QSEYSVGSEEEDED 1432
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 386 NDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDERQYQDFLED 445
+DE + + D I+ S D + Q KL+ + + +TDDE + Q L D
Sbjct: 141 DDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQ--LSD 198
Query: 446 LEEDEAIRKNVNIYRDSAIPVESDTDDE 473
+E + + + D PV SD DDE
Sbjct: 199 -DERQQLSEEEKANSDDERPVASDNDDE 225
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 385 LNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDER--QYQDF 442
L E V M D + L K+Y R+KRQ R ++ E +++ ++ + +R ++Q++
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEY 475
Query: 443 LEDL 446
L +
Sbjct: 476 LNSI 479
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 385 LNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDER--QYQDF 442
L E V M D + L K+Y R+KRQ R ++ E +++ ++ + +R ++Q++
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEY 475
Query: 443 LEDL 446
L +
Sbjct: 476 LNSI 479
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 385 LNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERENMDTDDER--QYQDF 442
L E V M D + L K+Y R+KRQ R ++ E +++ ++ + +R ++Q++
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEY 475
Query: 443 LEDL 446
L +
Sbjct: 476 LNSI 479
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,720,977
Number of Sequences: 37866
Number of extensions: 896741
Number of successful extensions: 2884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 2800
Number of HSP's gapped (non-prelim): 133
length of query: 503
length of database: 18,247,518
effective HSP length: 107
effective length of query: 396
effective length of database: 14,195,856
effective search space: 5621558976
effective search space used: 5621558976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.