Guide to the Human Genome
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Name: FAM126A Sequence: fasta or formatted (521aa) NCBI GI: 19923646
Description:

family with sequence similarity 126, member A

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         28           2
 C cysteine            2.5         13           1
 D aspartate           1.7          9           2
 E glutamate           7.5         39           2
 F phenylalanine       3.3         17           1
 G glycine             6.1         32           2
 H histidine           3.1         16           1
 I isoleucine          4.4         23           2
 K lysine              5.6         29           1
 L leucine            10.6         55           3
 M methionine          1.9         10           1
 N asparagine          3.5         18           1
 P proline             5.0         26           2
 Q glutamine           5.4         28           2
 R arginine            4.6         24           2
 S serine             13.6         71           2
 T threonine           6.3         33           2
 V valine              5.6         29           2
 W tryptophan          0.8          4           1
 Y tyrosine            3.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 126, member A 
FAM126B               0.478   hypothetical protein LOC285172 
FAM21C                0.014   hypothetical protein LOC253725 
FAM21A                0.014   hypothetical protein LOC387680 
LOC100170229          0.013   hypothetical protein LOC100170229 
FLG                   0.010   filaggrin 
SYNPO2L               0.010   synaptopodin 2-like isoform a 
SYNPO2L               0.010   synaptopodin 2-like isoform b 
FAM21B                0.010   hypothetical protein LOC55747 
LOC285556             0.010   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.010   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.010   PREDICTED: hypothetical protein LOC285556 
TNRC18                0.009   trinucleotide repeat containing 18 
RPTOR                 0.008   raptor isoform 1 
RPTOR                 0.008   raptor isoform 2 
MUC21                 0.008   mucin 21 
CAMSAP1L1             0.007   calmodulin regulated spectrin-associated protein 1-l...
SETDB1                0.007   SET domain, bifurcated 1 isoform 2 
SETDB1                0.007   SET domain, bifurcated 1 isoform 1 
RFC1                  0.006   replication factor C large subunit 
LOC100288562          0.006   PREDICTED: hypothetical protein XP_002342903 
LOC100288527          0.006   PREDICTED: hypothetical protein XP_002342902 
LOC100288500          0.006   PREDICTED: hypothetical protein XP_002342901 
LOC100288470          0.006   PREDICTED: hypothetical protein XP_002342900 
LOC100289448          0.006   PREDICTED: hypothetical protein XP_002342913, parti...
ATRX                  0.006   transcriptional regulator ATRX isoform 2 
ATRX                  0.006   transcriptional regulator ATRX isoform 1 
CCNT2                 0.006   cyclin T2 isoform a 
TLK2                  0.006   tousled-like kinase 2 isoform B 
TLK2                  0.006   tousled-like kinase 2 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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