Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM126B Sequence: fasta or formatted (530aa) NCBI GI: 28376658
Description:

hypothetical protein LOC285172

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         34           2
 C cysteine            1.5          8           1
 D aspartate           4.2         22           2
 E glutamate           6.2         33           2
 F phenylalanine       2.8         15           1
 G glycine             6.0         32           2
 H histidine           1.7          9           1
 I isoleucine          4.2         22           2
 K lysine              4.7         25           2
 L leucine            10.9         58           3
 M methionine          2.1         11           1
 N asparagine          4.0         21           2
 P proline             4.9         26           1
 Q glutamine           5.5         29           2
 R arginine            6.0         32           2
 S serine             11.9         63           4
 T threonine           5.7         30           2
 V valine              7.2         38           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.2         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285172 
FAM126A               0.475   family with sequence similarity 126, member A 
PPP4R4                0.013   HEAT-like repeat-containing protein isoform 1 
MUC17                 0.013   mucin 17 
NFRKB                 0.012   nuclear factor related to kappaB binding protein is...
NFRKB                 0.012   nuclear factor related to kappaB binding protein iso...
CCDC140               0.012   coiled-coil domain containing 140 
HRNR                  0.011   hornerin 
CC2D1B                0.011   coiled-coil and C2 domain containing 1B 
SH3PXD2A              0.011   SH3 multiple domains 1 
AHDC1                 0.010   AT hook, DNA binding motif, containing 1 
KDM3B                 0.010   jumonji domain containing 1B 
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
PNN                   0.009   pinin, desmosome associated protein 
SRRM2                 0.009   splicing coactivator subunit SRm300 
LUZP1                 0.008   leucine zipper protein 1 
LUZP1                 0.008   leucine zipper protein 1 
MAP4K4                0.008   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.008   mitogen-activated protein kinase kinase kinase kinas...
CHD9                  0.008   chromodomain helicase DNA binding protein 9 
FOXI3                 0.008   forkhead box I3 
NAP1L3                0.007   nucleosome assembly protein 1-like 3 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
LOC100129890          0.007   PREDICTED: hypothetical protein 
LOC100129890          0.007   PREDICTED: hypothetical protein 
FOXN3                 0.007   checkpoint suppressor 1 isoform 1 
FOXN3                 0.007   checkpoint suppressor 1 isoform 2 
ALMS1                 0.006   Alstrom syndrome 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press