Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 19923626
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens]
(348 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens] 675 0.0
gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens] 652 0.0
gi|22035646 apolipoprotein L3 isoform 1 [Homo sapiens] 374 e-104
gi|13562090 apolipoprotein L2 [Homo sapiens] 241 7e-64
gi|22035653 apolipoprotein L2 [Homo sapiens] 241 7e-64
gi|211938442 apolipoprotein L1 isoform c precursor [Homo sapiens] 225 5e-59
gi|211938440 apolipoprotein L1 isoform a precursor [Homo sapiens] 225 5e-59
gi|21735616 apolipoprotein L1 isoform b precursor [Homo sapiens] 225 5e-59
gi|21735614 apolipoprotein L1 isoform a precursor [Homo sapiens] 225 5e-59
gi|22035650 apolipoprotein L3 isoform 3 [Homo sapiens] 194 8e-50
gi|22035648 apolipoprotein L3 isoform 3 [Homo sapiens] 194 8e-50
gi|13449281 apolipoprotein L6 [Homo sapiens] 104 1e-22
gi|13470094 apolipoprotein L5 [Homo sapiens] 102 7e-22
gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Hom... 54 3e-07
gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Hom... 54 3e-07
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 35 0.13
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 35 0.13
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 33 0.38
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 32 1.1
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 30 2.5
gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens] 30 2.5
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 2.5
gi|54792740 transmembrane and coiled-coil domain family 2 [Homo ... 30 3.2
gi|224593756 hypothetical protein LOC164127 [Homo sapiens] 30 4.2
gi|223555975 tropomyosin 4 isoform 1 [Homo sapiens] 30 4.2
gi|117553617 hypothetical protein LOC440087 [Homo sapiens] 30 4.2
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 29 5.5
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 29 7.1
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 29 7.1
gi|32189394 mitochondrial ATP synthase beta subunit precursor [H... 29 7.1
>gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens]
Length = 348
Score = 675 bits (1742), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MGSWVQLITSVGVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWK 60
MGSWVQLITSVGVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWK
Sbjct: 1 MGSWVQLITSVGVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWK 60
Query: 61 RFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESI 120
RFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESI
Sbjct: 61 RFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESI 120
Query: 121 ERLRVIANEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASA 180
ERLRVIANEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASA
Sbjct: 121 ERLRVIANEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASA 180
Query: 181 TAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMI 240
TAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMI
Sbjct: 181 TAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMI 240
Query: 241 ANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVL 300
ANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVL
Sbjct: 241 ANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVL 300
Query: 301 DVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG 348
DVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG
Sbjct: 301 DVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG 348
>gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens]
Length = 351
Score = 652 bits (1683), Expect = 0.0
Identities = 336/341 (98%), Positives = 338/341 (99%)
Query: 8 ITSVGVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAE 67
+ + VQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAE
Sbjct: 11 VVCIWVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAE 70
Query: 68 LPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIA 127
LPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIA
Sbjct: 71 LPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIA 130
Query: 128 NEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASS 187
NEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASS
Sbjct: 131 NEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASS 190
Query: 188 IVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTL 247
IVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTL
Sbjct: 191 IVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTL 250
Query: 248 RRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQ 307
RRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQ
Sbjct: 251 RRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQ 310
Query: 308 DSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG 348
DSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG
Sbjct: 311 DSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG 351
>gi|22035646 apolipoprotein L3 isoform 1 [Homo sapiens]
Length = 402
Score = 374 bits (961), Expect = e-104
Identities = 195/324 (60%), Positives = 249/324 (76%), Gaps = 4/324 (1%)
Query: 26 FQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTP 85
F EKKRFTEE +YF+++VSPVHL+ILLT++EAWKRFV AELPR+EADALYEALK L
Sbjct: 73 FLEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLRT 132
Query: 86 YVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSG 145
Y AIED+ +QQK++QFREWFLKEFPQ++ KIQESIE+LR +AN IE+VHRGC I+NVVS
Sbjct: 133 YAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVSS 192
Query: 146 STG----ILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTA 201
STG I+S+ G++LAPFTAG SL++TAAGVGLG ASA GI +SIVE++YT SAE A
Sbjct: 193 STGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEA 252
Query: 202 SRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAW 261
SRLTATS D+L+ ++++RDITPN+LS ++ EAT+ I +++ +R+++A P+ W
Sbjct: 253 SRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTW 312
Query: 262 RYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESA 321
R + + RT TR V + AR L TSG+ + LDVVNLV +S LH+GAKS SA
Sbjct: 313 RISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSASA 372
Query: 322 ESLRQWAQELEENLNELTHIHQSL 345
E LR+ AQELEENL ELT I+Q L
Sbjct: 373 EELRRQAQELEENLMELTQIYQRL 396
>gi|13562090 apolipoprotein L2 [Homo sapiens]
Length = 337
Score = 241 bits (615), Expect = 7e-64
Identities = 135/334 (40%), Positives = 206/334 (61%), Gaps = 16/334 (4%)
Query: 28 EKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPYV 87
E F E+ ++YFQ +VS +L LLT DEAW FV AELPR+EAD L +AL L ++
Sbjct: 4 ESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASHM 63
Query: 88 AIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGS- 146
++DK+ K+QQ R+WFLKEFP+++ ++++ I +LR +A E+E+VHRG IANVVS S
Sbjct: 64 VMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSV 123
Query: 147 ---TGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASR 203
+GIL+++G+ LAPFT G+S + G+GLG A+A AGI S+VE A A
Sbjct: 124 GTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARN 183
Query: 204 LTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRY 263
L + T+ + +++ + TPNVL+ ++ + T+ I ++ +RR++A P +
Sbjct: 184 LDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARA---NPQLGAYA 240
Query: 264 VPINVVETLRTRG---------APTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHK 314
P +++ + G P + + + +G AT G+L++LDVV+L +S L +
Sbjct: 241 PPPHIIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 300
Query: 315 GAKSESAESLRQWAQELEENLNELTHIHQSLKAG 348
GAKSESAE L++ AQELE LN LT IH+ L+ G
Sbjct: 301 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPG 334
>gi|22035653 apolipoprotein L2 [Homo sapiens]
Length = 337
Score = 241 bits (615), Expect = 7e-64
Identities = 135/334 (40%), Positives = 206/334 (61%), Gaps = 16/334 (4%)
Query: 28 EKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPYV 87
E F E+ ++YFQ +VS +L LLT DEAW FV AELPR+EAD L +AL L ++
Sbjct: 4 ESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASHM 63
Query: 88 AIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGS- 146
++DK+ K+QQ R+WFLKEFP+++ ++++ I +LR +A E+E+VHRG IANVVS S
Sbjct: 64 VMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSV 123
Query: 147 ---TGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASR 203
+GIL+++G+ LAPFT G+S + G+GLG A+A AGI S+VE A A
Sbjct: 124 GTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARN 183
Query: 204 LTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRY 263
L + T+ + +++ + TPNVL+ ++ + T+ I ++ +RR++A P +
Sbjct: 184 LDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARA---NPQLGAYA 240
Query: 264 VPINVVETLRTRG---------APTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHK 314
P +++ + G P + + + +G AT G+L++LDVV+L +S L +
Sbjct: 241 PPPHIIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 300
Query: 315 GAKSESAESLRQWAQELEENLNELTHIHQSLKAG 348
GAKSESAE L++ AQELE LN LT IH+ L+ G
Sbjct: 301 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPG 334
>gi|211938442 apolipoprotein L1 isoform c precursor [Homo sapiens]
Length = 380
Score = 225 bits (573), Expect = 5e-59
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 20/356 (5%)
Query: 9 TSVGVQQNHP--GWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVA 66
T G Q+ P W E F E+ I+YF++KVS +L +LLT +EAW FV A
Sbjct: 24 TDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAA 83
Query: 67 ELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVI 126
ELPR EAD L +AL NL + ++DK+ K QQ+R WFLKEFP+++ +++++I RLR +
Sbjct: 84 ELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRAL 143
Query: 127 ANEIEKVHRGCVIANVVSG----STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATA 182
A+ ++KVH+G IANVVSG S+GIL+++G+ LAPFT G SL + G+ LGI +A
Sbjct: 144 ADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALT 203
Query: 183 GIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIAN 242
GI SS ++ + A L S D+L+ +R+ L + N LS A + + T+ I
Sbjct: 204 GITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGK 263
Query: 243 DVHTLRRSK--------ATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNL---GK 291
D+ LRR++ A+ RP + PI+ + + +++R +
Sbjct: 264 DIRALRRARANLQSVPHASASRPRVT---EPISAESGEQVERVNEPSILEMSRGVKLTDV 320
Query: 292 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA 347
A +VLDVV LV +S LH+GAKSE+AE L++ AQELEE LN L + ++ L+A
Sbjct: 321 APVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQA 376
>gi|211938440 apolipoprotein L1 isoform a precursor [Homo sapiens]
Length = 398
Score = 225 bits (573), Expect = 5e-59
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 20/356 (5%)
Query: 9 TSVGVQQNHP--GWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVA 66
T G Q+ P W E F E+ I+YF++KVS +L +LLT +EAW FV A
Sbjct: 42 TDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAA 101
Query: 67 ELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVI 126
ELPR EAD L +AL NL + ++DK+ K QQ+R WFLKEFP+++ +++++I RLR +
Sbjct: 102 ELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRAL 161
Query: 127 ANEIEKVHRGCVIANVVSG----STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATA 182
A+ ++KVH+G IANVVSG S+GIL+++G+ LAPFT G SL + G+ LGI +A
Sbjct: 162 ADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALT 221
Query: 183 GIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIAN 242
GI SS ++ + A L S D+L+ +R+ L + N LS A + + T+ I
Sbjct: 222 GITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGK 281
Query: 243 DVHTLRRSK--------ATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNL---GK 291
D+ LRR++ A+ RP + PI+ + + +++R +
Sbjct: 282 DIRALRRARANLQSVPHASASRPRVT---EPISAESGEQVERVNEPSILEMSRGVKLTDV 338
Query: 292 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA 347
A +VLDVV LV +S LH+GAKSE+AE L++ AQELEE LN L + ++ L+A
Sbjct: 339 APVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQA 394
>gi|21735616 apolipoprotein L1 isoform b precursor [Homo sapiens]
Length = 414
Score = 225 bits (573), Expect = 5e-59
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 20/356 (5%)
Query: 9 TSVGVQQNHP--GWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVA 66
T G Q+ P W E F E+ I+YF++KVS +L +LLT +EAW FV A
Sbjct: 58 TDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAA 117
Query: 67 ELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVI 126
ELPR EAD L +AL NL + ++DK+ K QQ+R WFLKEFP+++ +++++I RLR +
Sbjct: 118 ELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRAL 177
Query: 127 ANEIEKVHRGCVIANVVSG----STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATA 182
A+ ++KVH+G IANVVSG S+GIL+++G+ LAPFT G SL + G+ LGI +A
Sbjct: 178 ADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALT 237
Query: 183 GIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIAN 242
GI SS ++ + A L S D+L+ +R+ L + N LS A + + T+ I
Sbjct: 238 GITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGK 297
Query: 243 DVHTLRRSK--------ATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNL---GK 291
D+ LRR++ A+ RP + PI+ + + +++R +
Sbjct: 298 DIRALRRARANLQSVPHASASRPRVT---EPISAESGEQVERVNEPSILEMSRGVKLTDV 354
Query: 292 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA 347
A +VLDVV LV +S LH+GAKSE+AE L++ AQELEE LN L + ++ L+A
Sbjct: 355 APVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQA 410
>gi|21735614 apolipoprotein L1 isoform a precursor [Homo sapiens]
Length = 398
Score = 225 bits (573), Expect = 5e-59
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 20/356 (5%)
Query: 9 TSVGVQQNHP--GWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVA 66
T G Q+ P W E F E+ I+YF++KVS +L +LLT +EAW FV A
Sbjct: 42 TDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAA 101
Query: 67 ELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVI 126
ELPR EAD L +AL NL + ++DK+ K QQ+R WFLKEFP+++ +++++I RLR +
Sbjct: 102 ELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRAL 161
Query: 127 ANEIEKVHRGCVIANVVSG----STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATA 182
A+ ++KVH+G IANVVSG S+GIL+++G+ LAPFT G SL + G+ LGI +A
Sbjct: 162 ADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALT 221
Query: 183 GIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIAN 242
GI SS ++ + A L S D+L+ +R+ L + N LS A + + T+ I
Sbjct: 222 GITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGK 281
Query: 243 DVHTLRRSK--------ATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNL---GK 291
D+ LRR++ A+ RP + PI+ + + +++R +
Sbjct: 282 DIRALRRARANLQSVPHASASRPRVT---EPISAESGEQVERVNEPSILEMSRGVKLTDV 338
Query: 292 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA 347
A +VLDVV LV +S LH+GAKSE+AE L++ AQELEE LN L + ++ L+A
Sbjct: 339 APVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQA 394
>gi|22035650 apolipoprotein L3 isoform 3 [Homo sapiens]
Length = 202
Score = 194 bits (494), Expect = 8e-50
Identities = 104/196 (53%), Positives = 140/196 (71%)
Query: 150 LSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASRLTATST 209
+S+ G++LAPFTAG SL++TAAGVGLG ASA GI +SIVE++YT SAE ASRLTATS
Sbjct: 1 MSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSI 60
Query: 210 DQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRYVPINVV 269
D+L+ ++++RDITPN+LS ++ EAT+ I +++ +R+++A P+ WR +
Sbjct: 61 DRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGG 120
Query: 270 ETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQ 329
+ RT TR V + AR L TSG+ + LDVVNLV +S LH+GAKS SAE LR+ AQ
Sbjct: 121 QAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSASAEELRRQAQ 180
Query: 330 ELEENLNELTHIHQSL 345
ELEENL ELT I+Q L
Sbjct: 181 ELEENLMELTQIYQRL 196
>gi|22035648 apolipoprotein L3 isoform 3 [Homo sapiens]
Length = 202
Score = 194 bits (494), Expect = 8e-50
Identities = 104/196 (53%), Positives = 140/196 (71%)
Query: 150 LSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASRLTATST 209
+S+ G++LAPFTAG SL++TAAGVGLG ASA GI +SIVE++YT SAE ASRLTATS
Sbjct: 1 MSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSI 60
Query: 210 DQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRYVPINVV 269
D+L+ ++++RDITPN+LS ++ EAT+ I +++ +R+++A P+ WR +
Sbjct: 61 DRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGG 120
Query: 270 ETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQ 329
+ RT TR V + AR L TSG+ + LDVVNLV +S LH+GAKS SAE LR+ AQ
Sbjct: 121 QAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSASAEELRRQAQ 180
Query: 330 ELEENLNELTHIHQSL 345
ELEENL ELT I+Q L
Sbjct: 181 ELEENLMELTQIYQRL 196
>gi|13449281 apolipoprotein L6 [Homo sapiens]
Length = 343
Score = 104 bits (259), Expect = 1e-22
Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 32/295 (10%)
Query: 68 LPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIA 127
L R+E DA L V ++D D+ +E+ F L+EFP+++ ++ +I++LR +A
Sbjct: 15 LQRDEDDA------PLCEDVELQDGDLSPEEKIF----LREFPRLKEDLKGNIDKLRALA 64
Query: 128 NEIEKVHRGCVIANVVSGST----GILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAG 183
++I+K H+ AN+V+ ST G++S++G+ LAP T G SL ++ AG GL A+
Sbjct: 65 DDIDKTHKKFTKANMVATSTAVISGVMSLLGLALAPATGGGSLLLSTAGQGLATAAGVTS 124
Query: 184 IASSIVENTYTRSAELTASRLTAT-----------STDQLEALRDILRDITPNVLSFALD 232
I S +E + + A+ A + T D + A I+ ++ N L +A
Sbjct: 125 IVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEKADYVTAAGKIIYNLR-NTLKYAKK 183
Query: 233 FDEA-TKMIANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGK 291
A K+ AN R + AT R L + + V+ + T + K AR LG
Sbjct: 184 NVRAFWKLRANP----RLANAT-KRLLTTGQVSSRSRVQVQKAFAGTTLAMTKNARVLGG 238
Query: 292 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLK 346
S + D+ L ++ L +GA+++ AE LR A ELE L ELT +++SL+
Sbjct: 239 VMSAFSLGYDLATLSKEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQ 293
>gi|13470094 apolipoprotein L5 [Homo sapiens]
Length = 433
Score = 102 bits (253), Expect = 7e-22
Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 16/253 (6%)
Query: 105 FLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGSTG----ILSVIGVMLAPF 160
FL FP +++++++I+ L +A++++ H ++V+ S+G +++++G+ LAP
Sbjct: 102 FLSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPV 161
Query: 161 TAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILR 220
TAG SL ++A G GLG A+A I ++++EN +A ASRL +T EA I
Sbjct: 162 TAGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTSH-EAFGGI-- 218
Query: 221 DITPNVLSFALDFDEATKMI--ANDVHTLRRSKATVG-----RPLIAWRYVPINVVETL- 272
+ + ++ K I D+H + +K+ G + +A R++P +
Sbjct: 219 -NWSEIEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQ 277
Query: 273 RTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELE 332
R T + A +G A +G L++ D+ + +Q L GA++E+AE LR A++LE
Sbjct: 278 RAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLE 337
Query: 333 ENLNELTHIHQSL 345
+ L+ LT H+ L
Sbjct: 338 QELDRLTQHHRHL 350
>gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Homo
sapiens]
Length = 279
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 113 RWKIQESIERLRVIANEIEKVHRGCVIANVVSGS---TGIL-SVIGVMLAPFTAGLSLSI 168
R ++ + RLR +A +E++ R ++ANV S TG L +++G+ L+P T G SL +
Sbjct: 59 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 118
Query: 169 TAAGVGLGIASATAGIASSIVENTYTRSAEL-TASRLTATSTDQLEALRDIL 219
+A G+G+ A I S + + S EL + AT DQ+ + L
Sbjct: 119 SAVGLGVATAGGAVTITSDL-SLIFCNSRELRRVQEIAATCQDQMREILSCL 169
>gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Homo
sapiens]
Length = 248
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 113 RWKIQESIERLRVIANEIEKVHRGCVIANVVSGS---TGIL-SVIGVMLAPFTAGLSLSI 168
R ++ + RLR +A +E++ R ++ANV S TG L +++G+ L+P T G SL +
Sbjct: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
Query: 169 TAAGVGLGIASATAGIASSIVENTYTRSAEL-TASRLTATSTDQLEALRDIL 219
+A G+G+ A I S + + S EL + AT DQ+ + L
Sbjct: 88 SAVGLGVATAGGAVTITSDL-SLIFCNSRELRRVQEIAATCQDQMREILSCL 138
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 14 QQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEA 73
+Q W + +E++ +E + +KK+ KI +E W++ ++ EL
Sbjct: 385 EQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIRELEEMMQ 444
Query: 74 DALYEALKNLTPYVAIEDKDMQQKEQ--QFREWFLKEFPQIRWKIQESIERLRVIANEIE 131
D E L+ + + E++ MQ++E+ Q +E ++E + W+ ++ +++ I + E
Sbjct: 445 DQ-EEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQEEKTWRQEKLLKQEEKIWEQEE 503
Query: 132 KVHR 135
K+ R
Sbjct: 504 KMWR 507
Score = 33.9 bits (76), Expect = 0.22
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 20 WTVAGQFQEKKRFT-EEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELP---REEADA 75
W + Q QE+K + EE I+ ++K+ LKI ++ W++ ++ E RE+ D
Sbjct: 288 WNLLNQQQEEKMWRQEEKIQEQEEKMCEQELKIREQEEKMWRQEEKMHEQEEKIREQEDK 347
Query: 76 LY---EALKNLTPYVAIEDKDMQQKEQQFREW--FLKEFPQIRWKIQESI 120
++ E ++ + +++ M ++E++ RE ++E + W+ +E I
Sbjct: 348 MWRQEEKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQEEEMWRQEEKI 397
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/106 (18%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 27 QEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPY 86
+EK R EE + ++K+ KI +E W++ ++ E + + ++ K +
Sbjct: 359 EEKIREQEEKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQ 418
Query: 87 VAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEK 132
++K +Q+E+ +R+ ++ ++ +Q+ E+LR + ++++
Sbjct: 419 ---DEKIREQEEEMWRQ--EEKIRELEEMMQDQEEKLREVEEKMQE 459
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 14 QQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEA 73
+Q W + +E++ +E + +KK+ KI +E W++ ++ EL
Sbjct: 385 EQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIRELEEMMQ 444
Query: 74 DALYEALKNLTPYVAIEDKDMQQKEQ--QFREWFLKEFPQIRWKIQESIERLRVIANEIE 131
D E L+ + + E++ MQ++E+ Q +E ++E + W+ ++ +++ I + E
Sbjct: 445 DQ-EEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQEEKTWRQEKLLKQEEKIWEQEE 503
Query: 132 KVHR 135
K+ R
Sbjct: 504 KMWR 507
Score = 33.9 bits (76), Expect = 0.22
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 20 WTVAGQFQEKKRFT-EEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELP---REEADA 75
W + Q QE+K + EE I+ ++K+ LKI ++ W++ ++ E RE+ D
Sbjct: 288 WNLLNQQQEEKMWRQEEKIQEQEEKMCEQELKIREQEEKMWRQEEKMHEQEEKIREQEDK 347
Query: 76 LY---EALKNLTPYVAIEDKDMQQKEQQFREW--FLKEFPQIRWKIQESI 120
++ E ++ + +++ M ++E++ RE ++E + W+ +E I
Sbjct: 348 MWRQEEKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQEEEMWRQEEKI 397
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/106 (18%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 27 QEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPY 86
+EK R EE + ++K+ KI +E W++ ++ E + + ++ K +
Sbjct: 359 EEKIREQEEKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQ 418
Query: 87 VAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEK 132
++K +Q+E+ +R+ ++ ++ +Q+ E+LR + ++++
Sbjct: 419 ---DEKIREQEEEMWRQ--EEKIRELEEMMQDQEEKLREVEEKMQE 459
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 33.1 bits (74), Expect = 0.38
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 42 KKVSPVHLKILLTSDE-AWKRFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQ 100
+++ +H LL SDE A +R +R AE RE+ + EAL QQ+ ++
Sbjct: 724 RRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALG-------------QQERER 770
Query: 101 FREWFLKEFPQIRWKIQESIERL-RVIANEIEKV 133
R+ F + Q +W +Q+ +RL +A E E++
Sbjct: 771 ARQRFQQHLEQEQWALQQQRQRLYSEVAEERERL 804
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 31.6 bits (70), Expect = 1.1
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 14 QQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEA 73
QQN + G+ ++ K E+ + ++ +I+ D ++ + E
Sbjct: 1490 QQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTI--------EI 1541
Query: 74 DALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEI 130
++L E LKN IE K++ QK Q F+E L E R ++E+ E++ + N++
Sbjct: 1542 ESLNEVLKNYNQQKDIEHKELVQKLQHFQE--LGEEKDNR--VKEAEEKILTLENQV 1594
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 25 QFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRV---AELPREEADALYEALK 81
Q QEK R EE I ++K+ KI ++ W++ ++ E+ +E+ + ++E +
Sbjct: 561 QEQEKMRRQEEKIREQEEKIREQKEKIREQEEKIWEQEEKIREQEEMMQEQEEKMWEQEE 620
Query: 82 NLTPYVAIEDKDMQQKEQQFREWFLKEFPQ-IRWKIQE 118
+ +++ MQ++E++ R K + Q +R + QE
Sbjct: 621 KMCE----QEEKMQEQEEKMRRQEEKMWEQEVRLRQQE 654
Score = 29.3 bits (64), Expect = 5.5
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 20 WTVAGQFQEKKRFT-EEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYE 78
W Q QE+K + EE I+ +++K+ KI E ++ E R + + ++E
Sbjct: 291 WNRLNQQQEEKMWRQEEKIQEWEEKIQEQEEKIR----EQEEKIREQEEKMRRQEEMMWE 346
Query: 79 ALKNLTPYVAIEDKDMQQKEQQF-REWFLKEFPQIRWKIQESIERLRVIANEIEKV 133
E+K +Q+E + +E ++ ++ W+ +E I L +E EK+
Sbjct: 347 K----------EEKMRRQEEMMWEKEEKMRRLEEMMWEKEEKIRELEEKMHEQEKI 392
>gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens]
Length = 862
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 247 LRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNL- 305
++ KA+V R + WR + ++ LR R + +R+ V K +L +
Sbjct: 232 IKFQKASVSRCTLYWRDEGLVLLNRLRYRPSNSRLWNMVNVTKAKGRHDLLDLKPFTEYE 291
Query: 306 --VQDSLDLHKGAKSESAESLRQWAQELE 332
+ L L+KG+ S+ +ESLR E E
Sbjct: 292 FQISSKLHLYKGSWSDWSESLRAQTPEEE 320
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 30.4 bits (67), Expect = 2.5
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Query: 25 QFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLT 84
++QEK + ++ E + V S+EA +R V E R+E LY L++
Sbjct: 1603 EWQEKHKELQKEYEILLQSYENV-------SNEA-ERIQHVVEAVRQEKQELYGKLRSTE 1654
Query: 85 PYVAIEDKDMQQKEQQFREW------FLKEFPQIRWKIQESIERLRVIANEIEKVHRGCV 138
+K +Q+ EQ+ E F K Q +++E +RLR + + C+
Sbjct: 1655 ANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEVHPAGDTAKECM 1714
>gi|54792740 transmembrane and coiled-coil domain family 2 [Homo
sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 3.2
Identities = 68/314 (21%), Positives = 124/314 (39%), Gaps = 37/314 (11%)
Query: 44 VSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFRE 103
+ +H KIL +++ +++ + R++ A Y L N DK + +Q E
Sbjct: 289 IDHLHQKILKITEQ-----IKIEQEARDDNVAEYLKLANNA------DKQQVSRIKQVFE 337
Query: 104 WFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAG 163
++ Q ++ + +E R EIE+ +V+ L +G A AG
Sbjct: 338 KKNQKSAQTIAQLHKKLEHYRRRLKEIEQNGPSRQPKDVLRDMQQGLKDVG---ANVRAG 394
Query: 164 LSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASRLTAT-------STDQLEALR 216
+S G G G+ G S + + T+T A ++ R A+ S D + L+
Sbjct: 395 IS------GFGGGVVEGVKGSLSGLSQATHT--AVVSKPREFASLIRNKFGSADNIAHLK 446
Query: 217 DILRDITPNVLSFALDFDEATKMIA------NDVHTLRRSKATVGRPLIAWRYVPINVVE 270
D L D P + AL AT + + ++ + S A G A + +
Sbjct: 447 DPLEDGPPEEAARALS-GSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPGGALGSPK 505
Query: 271 TLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQE 330
+ GAP + + L + G + D + ++ L ++ + R +
Sbjct: 506 SNALYGAPGNL-DALLEELREIKEGQSHLEDSMEDLKTQLQRDYTYMTQCLQEERYRYER 564
Query: 331 LEENLNELTHIHQS 344
LEE LN+LT +HQ+
Sbjct: 565 LEEQLNDLTELHQN 578
>gi|224593756 hypothetical protein LOC164127 [Homo sapiens]
Length = 623
Score = 29.6 bits (65), Expect = 4.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 283 RKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNE 337
RKV + +L L + Q S ++H+G + E LR+ AQ+ EE L +
Sbjct: 433 RKVLMDCQAKAEELLRQLSLEQSFQRSQEIHQGLRKERQRELREKAQKEEEQLQQ 487
>gi|223555975 tropomyosin 4 isoform 1 [Homo sapiens]
Length = 284
Score = 29.6 bits (65), Expect = 4.2
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 27 QEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPY 86
QEK TE+ + V+ ++ +I L +E + R+A ++ +A A ++
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 87 VAIEDKDMQQKEQ-QFREWFLKEFPQIR----WKIQESIERLRVIANEIEKVHRGCVIAN 141
IE++ M+ +E+ + +E LKE I K +E +L ++ E+E+ ++
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 142 VVSG 145
+ G
Sbjct: 188 LKCG 191
>gi|117553617 hypothetical protein LOC440087 [Homo sapiens]
Length = 225
Score = 29.6 bits (65), Expect = 4.2
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 22 VAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALK 81
++ F + TE + + +++ + +K T E ++ ++E + EALK
Sbjct: 29 LSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALK 88
Query: 82 N-LTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIA 140
+ L P + + +D+++KE KI + + VI E +
Sbjct: 89 DKLEPTLYRKLQDIKEKETD--------------KIAIVQKVISVILGEATSAASAVAVK 134
Query: 141 NVVSG-STGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSA 197
V S +TGI++ + +LA A L SI A +GLGI I + VE T ++A
Sbjct: 135 LVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAILGA-VEKTQLQAA 191
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 29.3 bits (64), Expect = 5.5
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 27 QEKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPY 86
QEKK + +E + Q+K+ + +E W++ ++ E +EE E +
Sbjct: 449 QEKKMWRQEEKIHEQEKIREEEKR--QEQEEMWRQEEKIHE--QEEIWRQKEKMHEQEEK 504
Query: 87 VAIEDKDMQQKEQQFREWF--LKEFPQIRWKIQESIERLRVIANEIEKVH 134
+ +++ + ++E++ RE ++E + W+ +E I + E EK+H
Sbjct: 505 IRKQEEKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMH 554
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 28.9 bits (63), Expect = 7.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 53 LTSDEAWKRFVRVAELPREEADALYEAL 80
LT EAW+ VAEL +EE A YE L
Sbjct: 60 LTHKEAWEEEQEVAELLKEEFPAWYEKL 87
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 28.9 bits (63), Expect = 7.1
Identities = 19/73 (26%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 60 KRFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQES 119
K F+R+AE+ + A+ ++L +L + +D++ ++++ E +KEF I+ ++QE+
Sbjct: 1618 KHFIRLAEMEQTVAEQ-DDSLSSLLVKLKKVSQDLE-RQREITELKVKEFENIKLQLQEN 1675
Query: 120 IE-RLRVIANEIE 131
E ++ + E+E
Sbjct: 1676 HEDEVKKVKAEVE 1688
>gi|32189394 mitochondrial ATP synthase beta subunit precursor [Homo
sapiens]
Length = 529
Score = 28.9 bits (63), Expect = 7.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 268 VVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGA 316
++ L +G TR+V +VA++LG++T + + LV+ L GA
Sbjct: 82 ILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGA 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,967,937
Number of Sequences: 37866
Number of extensions: 427408
Number of successful extensions: 1864
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 49
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.