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Search of human proteins with 19923475
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923475 tRNA methyltransferase 6 [Homo sapiens]
(497 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923475 tRNA methyltransferase 6 [Homo sapiens] 995 0.0
gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo ... 42 0.001
gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo s... 42 0.001
gi|221219020 NYD-SP11 protein [Homo sapiens] 41 0.003
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 39 0.011
gi|21071070 transmembrane channel-like 1 [Homo sapiens] 38 0.019
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 37 0.041
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 37 0.041
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 37 0.041
gi|22035606 mitogen-activated protein kinase kinase kinase kinas... 36 0.071
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 36 0.071
gi|22035604 mitogen-activated protein kinase kinase kinase kinas... 36 0.071
gi|34878777 ring finger protein 20 [Homo sapiens] 36 0.092
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 36 0.092
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 36 0.092
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 36 0.092
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.12
gi|168229156 NFKB activating protein [Homo sapiens] 35 0.16
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 35 0.16
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 35 0.16
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 35 0.16
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 35 0.16
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 35 0.16
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 35 0.16
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 35 0.16
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 35 0.16
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 35 0.16
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 35 0.16
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 35 0.21
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 35 0.21
>gi|19923475 tRNA methyltransferase 6 [Homo sapiens]
Length = 497
Score = 995 bits (2573), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 1 MEGSGEQPGPQPQHPGDHRIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGH 60
MEGSGEQPGPQPQHPGDHRIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGH
Sbjct: 1 MEGSGEQPGPQPQHPGDHRIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGH 60
Query: 61 SYGTAFEVTSGGSLQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK 120
SYGTAFEVTSGGSLQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK
Sbjct: 61 SYGTAFEVTSGGSLQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK 120
Query: 121 GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKI 180
GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKI
Sbjct: 121 GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKI 180
Query: 181 NHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAA 240
NHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAA
Sbjct: 181 NHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAA 240
Query: 241 TACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQ 300
TACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQ
Sbjct: 241 TACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQ 300
Query: 301 ENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEA 360
ENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEA
Sbjct: 301 ENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEA 360
Query: 361 AALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGV 420
AALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGV
Sbjct: 361 AALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGV 420
Query: 421 INLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKADTSLKSNASTLESH 480
INLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKADTSLKSNASTLESH
Sbjct: 421 INLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKADTSLKSNASTLESH 480
Query: 481 ETEEPAAKKRKCPESDS 497
ETEEPAAKKRKCPESDS
Sbjct: 481 ETEEPAAKKRKCPESDS 497
>gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo
sapiens]
Length = 359
Score = 42.4 bits (98), Expect = 0.001
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKG 332
K L E D L NGT EE + E+E E+ MAE E + + E IS K
Sbjct: 98 KHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPIS----GKK 153
Query: 333 PKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGL------IVASRFHPTPLLLS 386
++ G +K+ + ++ ++ QR+ HL A S + +D L I S+ + T +
Sbjct: 154 SEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSV 213
Query: 387 LL--DFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKL 444
L D + + PL L+E+ G+ + L+ ++ N+ P L
Sbjct: 214 ELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL 273
Query: 445 LMSGGGGYLLSGFTVAMDNL 464
+ GGY+L G + M+ L
Sbjct: 274 PVL-SGGYVLGGGALCMELL 292
>gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo
sapiens]
Length = 375
Score = 42.4 bits (98), Expect = 0.001
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKG 332
K L E D L NGT EE + E+E E+ MAE E + + E IS K
Sbjct: 114 KHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPIS----GKK 169
Query: 333 PKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGL------IVASRFHPTPLLLS 386
++ G +K+ + ++ ++ QR+ HL A S + +D L I S+ + T +
Sbjct: 170 SEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSV 229
Query: 387 LL--DFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKL 444
L D + + PL L+E+ G+ + L+ ++ N+ P L
Sbjct: 230 ELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL 289
Query: 445 LMSGGGGYLLSGFTVAMDNL 464
+ GGY+L G + M+ L
Sbjct: 290 PVL-SGGYVLGGGALCMELL 308
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 19/112 (16%)
Query: 261 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET 320
+++SLL + LSSE + EE++ E+ E+ + E E E++
Sbjct: 2229 EMESLLDELEKQESLSSEEE------------EEREEEEEREEEEVREEEEERKEEEEGE 2276
Query: 321 METISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGL 372
+ + ++ E K K++ KK+ +QEK+ EE+ + ++SE + L
Sbjct: 2277 EKQVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKEE-------IMSEEETESL 2321
Score = 34.3 bits (77), Expect = 0.27
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 274 MLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGP 333
MLSS+ K+ +E TLEE+ + E E ++ E H +++ I +
Sbjct: 1528 MLSSKSKEQQYKDEEEVTLEEEVSREGEEKEQQV-TEEQRHIQEEHKWARIHRKRARAEK 1586
Query: 334 KERGSKKDYIQEKQRRQEEQRK 355
K ++ QE+++ +E+R+
Sbjct: 1587 KRAQEERKLAQEEEKLAQEERQ 1608
Score = 33.1 bits (74), Expect = 0.60
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERG 337
E K E+ ++EK+ +E E+ M+E + +++E E+ S + E KE
Sbjct: 2285 EEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVDREKEIL 2344
Query: 338 SKKDYIQEKQRRQEEQRKRHL 358
K EKQ + +EQR++ L
Sbjct: 2345 KK-----EKQFKLQEQRRKSL 2360
Score = 30.0 bits (66), Expect = 5.1
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 277 SEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMET-ISQDPEHKGPKE 335
S D EE E E E ++S++ E E++E E + ++ E + +E
Sbjct: 2214 SSQVDEVESEEHFSEEMESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEE 2273
Query: 336 RGSKKDYIQEKQRRQEEQRKR 356
G +EKQ +EE+ K+
Sbjct: 2274 EG------EEKQVEKEEEEKK 2288
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 38.9 bits (89), Expect = 0.011
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 261 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET 320
++ +L G AK+L+S D EE G EE++A E+E ED E++E
Sbjct: 340 QLQEVLEGFNMAKVLASLSDDEDEEEEEEGEEEEEEAEEEEEED---------EEEEEEE 390
Query: 321 METISQDPEHKGPKERGS 338
E ++P+ +G E+ +
Sbjct: 391 EEEEEEEPQQRGQGEKSA 408
>gi|21071070 transmembrane channel-like 1 [Homo sapiens]
Length = 760
Score = 38.1 bits (87), Expect = 0.019
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 277 SEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKER 336
S K VEE EE + E+E + ES P+ + T + I++D P++
Sbjct: 2 SPKKVQIKVEEKEDETEESSSEEEEEVEDKLPRRESLRPKRKRTRDVINEDDPEPEPEDE 61
Query: 337 GSKKDYIQEKQRR----QEEQRKRHLEAAALLSERNADGLIVAS 376
++K +E++RR EE+ E L +E + I+A+
Sbjct: 62 ETRKAREKERRRRLKRGAEEEEIDEEELERLKAELDEKRQIIAT 105
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 37.0 bits (84), Expect = 0.041
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENED------SMAEAPESNHPEDQETMETISQDPEHK 331
EPK+ + E EE QA +E E+ + +E P ++ + + ET +++PE
Sbjct: 1212 EPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEVPAASPADSSNSPETETKEPE-- 1269
Query: 332 GPKERGSKKDYIQEKQRRQEEQRK 355
E +K + E+QR+ EE+++
Sbjct: 1270 --VEEEEEKPRVSEEQRQSEEEQQ 1291
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 37.0 bits (84), Expect = 0.041
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENED------SMAEAPESNHPEDQETMETISQDPEHK 331
EPK+ + E EE QA +E E+ + +E P ++ + + ET +++PE
Sbjct: 1212 EPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEVPAASPADSSNSPETETKEPE-- 1269
Query: 332 GPKERGSKKDYIQEKQRRQEEQRK 355
E +K + E+QR+ EE+++
Sbjct: 1270 --VEEEEEKPRVSEEQRQSEEEQQ 1291
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 37.0 bits (84), Expect = 0.041
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENED------SMAEAPESNHPEDQETMETISQDPEHK 331
EPK+ + E EE QA +E E+ + +E P ++ + + ET +++PE
Sbjct: 1212 EPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEVPAASPADSSNSPETETKEPE-- 1269
Query: 332 GPKERGSKKDYIQEKQRRQEEQRK 355
E +K + E+QR+ EE+++
Sbjct: 1270 --VEEEEEKPRVSEEQRQSEEEQQ 1291
>gi|22035606 mitogen-activated protein kinase kinase kinase kinase 4
isoform 3 [Homo sapiens]
Length = 1212
Score = 36.2 bits (82), Expect = 0.071
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 270 FSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETIS---- 325
+ ++L+ K +E LEE+Q E+E E++ +E +
Sbjct: 387 YKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRK 446
Query: 326 QDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLE 359
++ E + +E + + QE RRQ E+ +RHLE
Sbjct: 447 EEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLE 480
Score = 33.5 bits (75), Expect = 0.46
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 280 KDSALVEESNGTLEEKQASEQENE-DSMAEAPESNHPEDQETMETISQDPEHKGPKERGS 338
KD E S EE++ EQE E S+ P E + + E+K E
Sbjct: 316 KDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPG----ESTLRRDFLRLQQENKERSEALR 371
Query: 339 KKDYIQEKQRRQEEQRKRHLEA 360
++ +QE+Q R++E+ KR L A
Sbjct: 372 RQQLLQEQQLREQEEYKRQLLA 393
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 36.2 bits (82), Expect = 0.071
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 270 FSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETIS---- 325
+ ++L+ K +E LEE+Q E+E E++ +E +
Sbjct: 387 YKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRK 446
Query: 326 QDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLE 359
++ E + +E + + QE RRQ E+ +RHLE
Sbjct: 447 EEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLE 480
Score = 33.5 bits (75), Expect = 0.46
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 280 KDSALVEESNGTLEEKQASEQENE-DSMAEAPESNHPEDQETMETISQDPEHKGPKERGS 338
KD E S EE++ EQE E S+ P E + + E+K E
Sbjct: 316 KDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPG----ESTLRRDFLRLQQENKERSEALR 371
Query: 339 KKDYIQEKQRRQEEQRKRHLEA 360
++ +QE+Q R++E+ KR L A
Sbjct: 372 RQQLLQEQQLREQEEYKRQLLA 393
>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
isoform 2 [Homo sapiens]
Length = 1320
Score = 36.2 bits (82), Expect = 0.071
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 270 FSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETIS---- 325
+ ++L+ K +E LEE+Q E+E E++ +E +
Sbjct: 387 YKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRK 446
Query: 326 QDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLE 359
++ E + +E + + QE RRQ E+ +RHLE
Sbjct: 447 EEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLE 480
Score = 33.5 bits (75), Expect = 0.46
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 280 KDSALVEESNGTLEEKQASEQENE-DSMAEAPESNHPEDQETMETISQDPEHKGPKERGS 338
KD E S EE++ EQE E S+ P E + + E+K E
Sbjct: 316 KDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPG----ESTLRRDFLRLQQENKERSEALR 371
Query: 339 KKDYIQEKQRRQEEQRKRHLEA 360
++ +QE+Q R++E+ KR L A
Sbjct: 372 RQQLLQEQQLREQEEYKRQLLA 393
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 35.8 bits (81), Expect = 0.092
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 276 SSEPKD--SALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGP 333
+ +PKD + L +S + AS+ ED A E D+E E ++ E +
Sbjct: 526 TEDPKDEPAELKPDSEDLSSQSSASKASQED----ANEIKSKRDEEERERERREKERERE 581
Query: 334 KERGSKKDYIQEKQRRQEEQRKR 356
+ER +K+ +EKQ+ +E +++R
Sbjct: 582 REREKEKEREREKQKLKESEKER 604
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 288 SNGTLEEKQASEQENEDSMAEA-PESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEK 346
S L + Q+S ++ +D AE P+S Q + SQ+ ++ +R ++ + +
Sbjct: 515 SGSALLQSQSSTEDPKDEPAELKPDSEDLSSQSSASKASQEDANEIKSKRDEEERERERR 574
Query: 347 QRRQEEQRKRHLE 359
++ +E +R+R E
Sbjct: 575 EKEREREREREKE 587
Score = 29.6 bits (65), Expect = 6.6
Identities = 18/82 (21%), Positives = 38/82 (46%)
Query: 74 LQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENST 133
LQ + E+P E E D+ ++ + K +Q+D +K K + E ++ +
Sbjct: 520 LQSQSSTEDPKDEPAELKPDSEDLSSQSSASKASQEDANEIKSKRDEEERERERREKERE 579
Query: 134 TFRDKTEFAQDKYIKKKKKKYE 155
R++ + + + K+K K+ E
Sbjct: 580 REREREKEKEREREKQKLKESE 601
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 35.8 bits (81), Expect = 0.092
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDS----MAEAPESNHPEDQETMETISQDP 328
K S E KDS + E + S +E A+ S PED++ + + D
Sbjct: 7 KPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKK--KRLEDDK 64
Query: 329 EHKGPKERG------------SKKDYIQEKQRRQEEQRKRHLEAAALLSERNA 369
K KER SKK +EK++ QEE+RK+ E A E A
Sbjct: 65 RKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEA 117
Score = 33.1 bits (74), Expect = 0.60
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERG 337
+ KDS E+ EE++ E E+ E N PE++E S + + +G +E
Sbjct: 1018 DSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEG----SDNDDDEGEEEEE 1073
Query: 338 SKKDYIQEKQRRQE 351
DY+ + + E
Sbjct: 1074 ENTDYLTDSNKENE 1087
Score = 29.3 bits (64), Expect = 8.7
Identities = 16/88 (18%), Positives = 43/88 (48%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKG 332
K +S P+D E + +E + ++++E+ + ES E++E + ++ + +
Sbjct: 47 KEVSKAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQE 106
Query: 333 PKERGSKKDYIQEKQRRQEEQRKRHLEA 360
+ + +++ + + +EE + H EA
Sbjct: 107 EQAKRQQEEEAAAQMKEKEESIQLHQEA 134
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 35.8 bits (81), Expect = 0.092
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDS----MAEAPESNHPEDQETMETISQDP 328
K S E KDS + E + S +E A+ S PED++ + + D
Sbjct: 7 KPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKK--KRLEDDK 64
Query: 329 EHKGPKERG------------SKKDYIQEKQRRQEEQRKRHLEAAALLSERNA 369
K KER SKK +EK++ QEE+RK+ E A E A
Sbjct: 65 RKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEA 117
Score = 33.1 bits (74), Expect = 0.60
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERG 337
+ KDS E+ EE++ E E+ E N PE++E S + + +G +E
Sbjct: 1018 DSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEG----SDNDDDEGEEEEE 1073
Query: 338 SKKDYIQEKQRRQE 351
DY+ + + E
Sbjct: 1074 ENTDYLTDSNKENE 1087
Score = 29.3 bits (64), Expect = 8.7
Identities = 16/88 (18%), Positives = 43/88 (48%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKG 332
K +S P+D E + +E + ++++E+ + ES E++E + ++ + +
Sbjct: 47 KEVSKAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQE 106
Query: 333 PKERGSKKDYIQEKQRRQEEQRKRHLEA 360
+ + +++ + + +EE + H EA
Sbjct: 107 EQAKRQQEEEAAAQMKEKEESIQLHQEA 134
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 35.8 bits (81), Expect = 0.092
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 274 MLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGP 333
+L +P + E E+++ E+E E + E +D+E + ++ E +
Sbjct: 494 ILEKQPSPEEIRERER---EKEREREKELEKEQEQEREKEREKDRERQQEKEKELEKEQE 550
Query: 334 KERGSKKDYIQEKQRRQEEQRKRHLE 359
K+R +K+ QEK++ E Q+++ E
Sbjct: 551 KQREMEKERKQEKEKELERQKEKEKE 576
Score = 30.4 bits (67), Expect = 3.9
Identities = 14/67 (20%), Positives = 36/67 (53%)
Query: 293 EEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEE 352
E+++ E+E + + E ++QE + ++ + + KE +K+ +E Q+ +E+
Sbjct: 524 EQEREKEREKDRERQQEKEKELEKEQEKQREMEKERKQEKEKELERQKEKEKELQKMKEQ 583
Query: 353 QRKRHLE 359
+++ LE
Sbjct: 584 EKECELE 590
Score = 29.3 bits (64), Expect = 8.7
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 286 EESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQE 345
+E E+ + +QE E + + E ++E + ++ E + KE+ +K QE
Sbjct: 525 QEREKEREKDRERQQEKEKELEKEQEKQREMEKERKQEKEKELERQKEKEKELQKMKEQE 584
Query: 346 KQRRQEEQRKR 356
K+ E++R++
Sbjct: 585 KECELEKEREK 595
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 35.4 bits (80), Expect = 0.12
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 286 EESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGP--KERGSKKDYI 343
E+ T E ++ E+E E+ + E++E E ++ E K KE G ++
Sbjct: 41 EKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKK 100
Query: 344 QEKQRRQEEQRKR 356
++++R++EE+ K+
Sbjct: 101 KKRRRKEEEEEKK 113
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 273 KMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKG 332
K + K++ EE+ T EE++ + E + E + ++T ET + + +
Sbjct: 1 KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKE--KKKKTKETEKRKEKEEE 58
Query: 333 PKERGSKKDYIQEKQRRQEEQRKRHLE 359
K+R K+ +E++ R+EE+ + E
Sbjct: 59 EKKRKRKRKKKKEEEEREEEEEEEEEE 85
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 264 SLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAE------APESNHP-- 315
S+ +G++S S +P S L +E +L +K+ SE+E + +P++ P
Sbjct: 98 SVYYGSYSRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDS 157
Query: 316 ------EDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNA 369
ED+E ++ + + K++ S + + K+RR+++ KR + + S+ ++
Sbjct: 158 DEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDS 217
Query: 370 D 370
D
Sbjct: 218 D 218
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 35.0 bits (79), Expect = 0.16
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 280 KDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETI---SQDPEHKGPKER 336
+D ++ ++ EE++ E+E E+ E E + E++E E ++ E + +E
Sbjct: 876 EDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEF 935
Query: 337 GSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADG 371
++ ++E++ ++E+ + LE L A G
Sbjct: 936 EEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGG 970
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 35.0 bits (79), Expect = 0.16
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 286 EESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQE 345
E+ E K+ + +E E + ++ E +S+ + + P+ R +KK ++E
Sbjct: 1317 EKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEE 1376
Query: 346 KQRRQEEQRKR 356
QR ++++KR
Sbjct: 1377 NQRSYKQKKKR 1387
Score = 31.6 bits (70), Expect = 1.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 280 KDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSK 339
+DS+ +SN EE++ E+E E+ E E + +D S+ P K R
Sbjct: 1394 EDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDD-------SKSPGKGRKKIRKIL 1446
Query: 340 KD-----YIQEKQRRQEEQRKRHLE 359
KD Q + +EE+RKR E
Sbjct: 1447 KDDKLRTETQNALKEEEERRKRIAE 1471
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 276 SSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPE-----H 330
SSE K ++ EE EE++ E+E E+ + + ++ + I +D +
Sbjct: 1397 SSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQ 1456
Query: 331 KGPKERGSKKDYIQEKQRRQEEQRK 355
KE ++ I E++R +E+ R+
Sbjct: 1457 NALKEEEERRKRIAEREREREKLRE 1481
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 35.0 bits (79), Expect = 0.16
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 286 EESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQE 345
E+ E K+ + +E E + ++ E +S+ + + P+ R +KK ++E
Sbjct: 1355 EKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEE 1414
Query: 346 KQRRQEEQRKR 356
QR ++++KR
Sbjct: 1415 NQRSYKQKKKR 1425
Score = 31.6 bits (70), Expect = 1.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 280 KDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSK 339
+DS+ +SN EE++ E+E E+ E E + +D S+ P K R
Sbjct: 1432 EDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDD-------SKSPGKGRKKIRKIL 1484
Query: 340 KD-----YIQEKQRRQEEQRKRHLE 359
KD Q + +EE+RKR E
Sbjct: 1485 KDDKLRTETQNALKEEEERRKRIAE 1509
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 276 SSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPE-----H 330
SSE K ++ EE EE++ E+E E+ + + ++ + I +D +
Sbjct: 1435 SSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQ 1494
Query: 331 KGPKERGSKKDYIQEKQRRQEEQRK 355
KE ++ I E++R +E+ R+
Sbjct: 1495 NALKEEEERRKRIAEREREREKLRE 1519
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 35.0 bits (79), Expect = 0.16
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 278 EPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERG 337
E ++ EE + EE++ E E+E S + + +++++ +T+ + P KE
Sbjct: 533 EEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPS----KEMS 588
Query: 338 SKKDYIQEKQRRQEE----QRKRHLEAAALLSERNAD 370
S +Y + R +EE + KR +E L +N +
Sbjct: 589 SDSEYDSDDDRTKEERAYDKAKRRIEKRRLEHSKNVN 625
Score = 31.2 bits (69), Expect = 2.3
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 281 DSALVEESNGTLEEKQASEQENE-DSMAEAPESNHPEDQETMETISQDPEH---KGPKER 336
D+ ++ S E A+E +NE D + + E +E + + P K +E
Sbjct: 288 DTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEA 347
Query: 337 GSKKDYIQEKQRRQEEQRKRHLE 359
+K +E+Q+R+EE+R + LE
Sbjct: 348 LAKLKEEEERQKREEEERIKRLE 370
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 293 EEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEE 352
EE+Q E+E E E+ E++ + + E K KE+ K+ +E + +
Sbjct: 355 EERQKREEEERIKRLEELEAKRKEEERLEQ---EKRERKKQKEKERKERLKKEGKLLTKS 411
Query: 353 QRKRHLEAAALLSERNADGLIVASR 377
QR+ A A L A G+ V S+
Sbjct: 412 QREARARAEATLKLLQAQGVEVPSK 436
Score = 29.6 bits (65), Expect = 6.6
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 42 RKKVTFEKQWFYLDNVIGHSYGTAFEVTSGGSLQPKKKREEPTAETKEAGT--DNRNIVD 99
+KK +KQ F D+++ + E G + +PT +E T D +
Sbjct: 43 KKKKEKKKQDFDEDDILKELEELSLEA-QGIKADRETVAVKPTENNEEEFTSKDKKKKGQ 101
Query: 100 DGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKK 153
GK Q +D + L+DK K ++ + +E + D +F +K KK K K
Sbjct: 102 KGKKQSFDDNDSEELEDKDSKSKKTAKPKVEMYSGSDDDDDF--NKLPKKAKGK 153
Score = 29.3 bits (64), Expect = 8.7
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 275 LSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMET-ISQDPEHKGP 333
L + KD + +ES EE+ + D+ P +E ET + + +++G
Sbjct: 259 LETGKKDQSKQKESQRKFEEETVKSKVTVDT------GVIPASEEKAETPTAAEDDNEGD 312
Query: 334 KERGSKKDYIQEKQRRQEEQRK 355
K++ KK EK+ +++E++K
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKK 334
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 35.0 bits (79), Expect = 0.16
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 318 QETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGLI---- 373
+E +E ++ E K +ER +K+ +EK+R +E +R+R E AA S +G +
Sbjct: 610 EEAIEKAKREAEQKAREEREREKE--KEKEREREREREREAERAAKASSSAHEGRLSDPQ 667
Query: 374 ------VASRFHPTPLLLSLL-DFVAPSRP 396
+ F P P ++ + ++ P P
Sbjct: 668 LSGPGHMRPSFEPPPTTIAAVPPYIGPDTP 697
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.0 bits (79), Expect = 0.16
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 318 QETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGLI---- 373
+E +E ++ E K +ER +K+ +EK+R +E +R+R E AA S +G +
Sbjct: 1164 EEAIEKAKREAEQKAREEREREKE--KEKEREREREREREAERAAKASSSAHEGRLSDPQ 1221
Query: 374 ------VASRFHPTPLLLSLL-DFVAPSRP 396
+ F P P ++ + ++ P P
Sbjct: 1222 LSGPGHMRPSFEPPPTTIAAVPPYIGPDTP 1251
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.0 bits (79), Expect = 0.16
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 318 QETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGLI---- 373
+E +E ++ E K +ER +K+ +EK+R +E +R+R E AA S +G +
Sbjct: 1164 EEAIEKAKREAEQKAREEREREKE--KEKEREREREREREAERAAKASSSAHEGRLSDPQ 1221
Query: 374 ------VASRFHPTPLLLSLL-DFVAPSRP 396
+ F P P ++ + ++ P P
Sbjct: 1222 LSGPGHMRPSFEPPPTTIAAVPPYIGPDTP 1251
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 35.0 bits (79), Expect = 0.16
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 261 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET 320
K S H K + K+ V+E + E ++ E+E E + + + +++
Sbjct: 366 KSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDR 425
Query: 321 METISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSER 367
+ +D E + KE +KD +EK++ Q+++++R + + + E+
Sbjct: 426 EKDKEKDREREREKEH--EKDRDKEKEKEQDKEKEREKDRSKEIDEK 470
Score = 29.3 bits (64), Expect = 8.7
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 293 EEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEE 352
E ++ E++ E E H +D++ + QD E + K+R + I EK+++ ++
Sbjct: 420 EREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE---IDEKRKKDKK 476
Query: 353 QR 354
R
Sbjct: 477 SR 478
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 35.0 bits (79), Expect = 0.16
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 261 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET 320
K S H K + K+ V+E + E ++ E+E E + + + +++
Sbjct: 250 KSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDR 309
Query: 321 METISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSER 367
+ +D E + KE +KD +EK++ Q+++++R + + + E+
Sbjct: 310 EKDKEKDREREREKEH--EKDRDKEKEKEQDKEKEREKDRSKEIDEK 354
Score = 29.3 bits (64), Expect = 8.7
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 293 EEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEE 352
E ++ E++ E E H +D++ + QD E + K+R + I EK+++ ++
Sbjct: 304 EREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE---IDEKRKKDKK 360
Query: 353 QR 354
R
Sbjct: 361 SR 362
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/140 (22%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 291 TLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQ---EKQ 347
T+ E Q + ++A+ P+++ P+D +E + PE+ +E ++ ++++ ++
Sbjct: 134 TVLEGQGPANTQDATIAQEPKNSEPQDPPNIEKPQEAPEY---QETAAQLEFLELPPPQE 190
Query: 348 RRQEEQRKRHLEAAALLSERNADGLIV-----ASRFHPTPLLLSLLDFVAPSRPFVVYC- 401
+ + LE +A ++ + +GLIV AS F P+ L DF P + + +
Sbjct: 191 PLEPSNAQEFLELSA--AQESLEGLIVVETSAASEFPQAPIGLEATDF--PLQYTLTFSG 246
Query: 402 ---QYKEPLLECYTKLRERG 418
+ E L++ Y+ +R RG
Sbjct: 247 DSQKLPEFLVQLYSYMRVRG 266
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 34.7 bits (78), Expect = 0.21
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 291 TLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQ 350
T +E+ + + + + E+N D+E I +D E + K R ++D +E++R +
Sbjct: 88 TEKERDRDRKRDRERRRKEKETNRNRDREKQTEIERDREREKQKGRERERDRGRERERDR 147
Query: 351 EEQRKRHLEAAALLSERNADG 371
+ +++R + +E++ DG
Sbjct: 148 DREKERERQ-----TEKDRDG 163
Score = 29.3 bits (64), Expect = 8.7
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 293 EEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEE 352
+E++ +++ D E E+ D+E + ++ E ++R ++K+ ++ R ++
Sbjct: 151 KERERQTEKDRDGQRET-ETERERDREREKQKERETERDRDRQRDTEKERERQTDRERDR 209
Query: 353 QRKRHLE 359
QRK E
Sbjct: 210 QRKTQTE 216
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 34.7 bits (78), Expect = 0.21
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 261 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET 320
+++ L TF K + + + +E+ L E+Q EQE + A +QE
Sbjct: 341 QLEKKLPVTFEDKKRENFERGNLELEKRRQALLEQQRKEQERLAQLERA-------EQER 393
Query: 321 METISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLE 359
E Q+ E K E + + +E +R++EE+R++ +E
Sbjct: 394 KERERQEQERKRQLELEKQLEKQRELERQREEERRKEIE 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,176,272
Number of Sequences: 37866
Number of extensions: 941132
Number of successful extensions: 6905
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 5284
Number of HSP's gapped (non-prelim): 1558
length of query: 497
length of database: 18,247,518
effective HSP length: 106
effective length of query: 391
effective length of database: 14,233,722
effective search space: 5565385302
effective search space used: 5565385302
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.