Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 198041703
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|198041703 solute carrier family 22 (organic cation
transporter), member 18 antisense [Homo sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|198041703 solute carrier family 22 (organic cation transporte... 530 e-151
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 35 0.048
gi|144226847 obscurin-like 1 [Homo sapiens] 34 0.11
gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens] 31 1.2
gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens] 31 1.2
gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens] 31 1.2
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 31 1.2
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 31 1.2
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 30 1.5
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 30 1.5
gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4 ... 30 2.0
gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2 ... 30 2.0
gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens] 30 2.0
gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens] 30 2.0
gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens] 30 2.0
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 30 2.0
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239754510 PREDICTED: similar to hCG1644697 [Homo sapiens] 30 2.6
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239749071 PREDICTED: similar to hCG1644697 [Homo sapiens] 30 2.6
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239743097 PREDICTED: similar to hCG1644697 [Homo sapiens] 30 2.6
gi|239508749 PREDICTED: similar to hCG1644697 [Homo sapiens] 30 2.6
gi|12056465 fibrillarin [Homo sapiens] 30 2.6
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 30 2.6
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 30 2.6
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 30 2.6
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 30 2.6
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 30 2.6
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 29 3.4
>gi|198041703 solute carrier family 22 (organic cation transporter),
member 18 antisense [Homo sapiens]
Length = 253
Score = 530 bits (1365), Expect = e-151
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MGELPGSEGMWENCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREA 60
MGELPGSEGMWENCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREA
Sbjct: 1 MGELPGSEGMWENCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREA 60
Query: 61 RRQFCRMRGSRLTGGRKGFGSSGLRFGRGGFSEEVMPQPVLKAMRCAEGAWWFSPDGPAG 120
RRQFCRMRGSRLTGGRKGFGSSGLRFGRGGFSEEVMPQPVLKAMRCAEGAWWFSPDGPAG
Sbjct: 61 RRQFCRMRGSRLTGGRKGFGSSGLRFGRGGFSEEVMPQPVLKAMRCAEGAWWFSPDGPAG 120
Query: 121 SAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRPLVCKITGKCLSVCSEENA 180
SAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRPLVCKITGKCLSVCSEENA
Sbjct: 121 SAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRPLVCKITGKCLSVCSEENA 180
Query: 181 KAGGCSAFPLLLSQLGARMTGREHAHKGPELTTPDSGLPRPPNPALAGFRALAQHSPPLG 240
KAGGCSAFPLLLSQLGARMTGREHAHKGPELTTPDSGLPRPPNPALAGFRALAQHSPPLG
Sbjct: 181 KAGGCSAFPLLLSQLGARMTGREHAHKGPELTTPDSGLPRPPNPALAGFRALAQHSPPLG 240
Query: 241 TSTPSAVLLSAAT 253
TSTPSAVLLSAAT
Sbjct: 241 TSTPSAVLLSAAT 253
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 35.4 bits (80), Expect = 0.048
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 127 PAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRPLVCKITGKCLSVCSEENAKAGGCS 186
P +G G P G+ + P + S R ++ S+CS + A
Sbjct: 594 PPKGLAGPPASPGKAQ--------PPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDR 645
Query: 187 AFPLLLSQLGARMTGREHAHKGPELTTPDSGLPRPPNPALAGFRALAQHSPPLGTSTPS 245
+ P +L+ LG R H K P +P PR PNPA A A P+ T+ S
Sbjct: 646 SGPQILTPLGDRFVIPPHP-KVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDAS 703
>gi|144226847 obscurin-like 1 [Homo sapiens]
Length = 1896
Score = 34.3 bits (77), Expect = 0.11
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 25/139 (17%)
Query: 97 PQPVLKAMRCAEGAWWFSPDGPAGSAASI---------WPAEGAEGLPGQLGRDRLEVVY 147
P PV++ ++CA +W + A + W EG LP DR ++Y
Sbjct: 241 PAPVVEPLKCAPKTFWVNEGKHAKFRCYVMGKPEPEIEWHWEGRPLLP-----DRRRLMY 295
Query: 148 SVPDNVPGQNGSRRPLVCKITGKCLSVCSEENAKAGGCSAFPLLLSQLGARMT------- 200
D + L C+ + L VC+ N+ SA L + + R T
Sbjct: 296 RDRDG----GFVLKVLYCQAKDRGLYVCAARNSAGQTLSAVQLHVKEPRLRFTRPLQDVE 351
Query: 201 GREHAHKGPELTTPDSGLP 219
GREH E P+S +P
Sbjct: 352 GREHGIAVLECKVPNSRIP 370
>gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens]
Length = 445
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 13 NCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREARRQFCRMRGSRL 72
N P V++ A T+ + L R+ WL+ + + Q + + RE R+RG L
Sbjct: 125 NIPSAAVEETADSTICHI-LNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETL 183
Query: 73 TGGRKGFGSSG 83
G GFG +G
Sbjct: 184 --GLIGFGRTG 192
>gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens]
Length = 445
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 13 NCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREARRQFCRMRGSRL 72
N P V++ A T+ + L R+ WL+ + + Q + + RE R+RG L
Sbjct: 125 NIPSAAVEETADSTICHI-LNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETL 183
Query: 73 TGGRKGFGSSG 83
G GFG +G
Sbjct: 184 --GLIGFGRTG 192
>gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens]
Length = 985
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 13 NCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREARRQFCRMRGSRL 72
N P V++ A T+ + L R+ WL+ + + Q + + RE R+RG L
Sbjct: 665 NIPSAAVEETADSTICHI-LNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETL 723
Query: 73 TGGRKGFGSSG 83
G GFG +G
Sbjct: 724 --GLIGFGRTG 732
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 30.8 bits (68), Expect = 1.2
Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 37/115 (32%)
Query: 36 RKRLWLWASEPVRPQPQGIHRFREARRQFCRMRGSRLTGGRKGFGSSGLRFGRGGFSEEV 95
R+ L +W S+ P QG HR E R + G GG G G
Sbjct: 1421 RQPLGVWQSQEEPPGSQGPHRHLE--RSWSSQEGGLGPGGWWGCG--------------- 1463
Query: 96 MPQPVLKAMRCAEGAW----------WFSPDGPAGSAASIWPAEGAEGLPGQLGR 140
+P L A + EGAW W P+ W + LP +LG+
Sbjct: 1464 --EPSLGAAKAPEGAWGGTSREYKESWGQPEA--------WEEKPTHELPRELGK 1508
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 211 LTTPDSGLPRPPNPALAGFRAL----AQHSPPLGTSTPSAVL 248
++ P+ GLP P+PAL AL AQ PP +T S L
Sbjct: 593 ISVPEGGLPVAPSPALPEAHALGTLSAQQPPPAAATTSSTSL 634
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 74 GGRKGFGSSGLRFGRGGFSEEVMPQPVLKAMRCAEGAWWFSPDGPAGSAASIWPAEGAEG 133
GG +G GS+ +GRG S QP L P+ P A + + EG
Sbjct: 341 GGPQGVGSAAPYWGRGEVSVGPAHQPFL------------PPEAPPPIPACLCQPQPGEG 388
Query: 134 LPGQLGRDR 142
G GRDR
Sbjct: 389 SGGAAGRDR 397
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 74 GGRKGFGSSGLRFGRGGFSEEVMPQPVLKAMRCAEGAWWFSPDGPAGSAASIWPAEGAEG 133
GG +G GS+ +GRG S QP L P+ P A + + EG
Sbjct: 315 GGPQGVGSAAPYWGRGEVSVGPAHQPFL------------PPEAPPPIPACLCQPQPGEG 362
Query: 134 LPGQLGRDR 142
G GRDR
Sbjct: 363 SGGAAGRDR 371
>gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4
[Homo sapiens]
Length = 809
Score = 30.0 bits (66), Expect = 2.0
Identities = 38/113 (33%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 131 AEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRP-LVCKITGKCLSVCSEENAKAGGCSAFP 189
AE L G L R E+ Y +PG + R P L G+ L+V S A G
Sbjct: 52 AELLHGALLRRGPEMGY-----LPGSD--RDPTLATPPAGQTLAVPSLPRATEPGTGPLT 104
Query: 190 LLLSQLGARMTGREHAHKGPELTTPDSG--LPRPPNPALAGFRALAQHSPPLG 240
++ G R G PEL TP G P PP+PA G PPLG
Sbjct: 105 TAVTPNGVRGAGPT----APELLTPPPGTTAPPPPSPASPG--------PPLG 145
>gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2
[Homo sapiens]
Length = 910
Score = 30.0 bits (66), Expect = 2.0
Identities = 38/113 (33%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 131 AEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRP-LVCKITGKCLSVCSEENAKAGGCSAFP 189
AE L G L R E+ Y +PG + R P L G+ L+V S A G
Sbjct: 52 AELLHGALLRRGPEMGY-----LPGSD--RDPTLATPPAGQTLAVPSLPRATEPGTGPLT 104
Query: 190 LLLSQLGARMTGREHAHKGPELTTPDSG--LPRPPNPALAGFRALAQHSPPLG 240
++ G R G PEL TP G P PP+PA G PPLG
Sbjct: 105 TAVTPNGVRGAGPT----APELLTPPPGTTAPPPPSPASPG--------PPLG 145
>gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 115 PDGPAGSAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSR 160
P PA S PA G P QL D Y PD+ GQ+ S+
Sbjct: 194 PPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQ 239
>gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 115 PDGPAGSAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSR 160
P PA S PA G P QL D Y PD+ GQ+ S+
Sbjct: 194 PPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQ 239
>gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 115 PDGPAGSAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSR 160
P PA S PA G P QL D Y PD+ GQ+ S+
Sbjct: 194 PPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQ 239
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 196 GARMTGREHAHKGPELTTPDSGLPRPPNPALAGFRALAQHSPP 238
G +M G GP L+TP G P+PP+ R QH PP
Sbjct: 209 GGKMPGGPKPGGGPGLSTP-GGHPKPPHRGGGEPRGGRQHHPP 250
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 2.6
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 198 RMTGREHAHKGPELTTP-DSGLPRPPNPA 225
R G E A GP LT P +G P PP+PA
Sbjct: 183 RKAGAERAGAGPTLTPPLPAGSPDPPSPA 211
>gi|239754510 PREDICTED: similar to hCG1644697 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 64 FCRMRGSRLTGGRKGFGSSG 83
F RGSRLTG RKG G+ G
Sbjct: 70 FVSFRGSRLTGERKGVGTEG 89
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 2.6
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 198 RMTGREHAHKGPELTTP-DSGLPRPPNPA 225
R G E A GP LT P +G P PP+PA
Sbjct: 183 RKAGAERAGAGPTLTPPLPAGSPDPPSPA 211
>gi|239749071 PREDICTED: similar to hCG1644697 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 64 FCRMRGSRLTGGRKGFGSSG 83
F RGSRLTG RKG G+ G
Sbjct: 70 FVSFRGSRLTGERKGVGTEG 89
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 2.6
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 198 RMTGREHAHKGPELTTP-DSGLPRPPNPA 225
R G E A GP LT P +G P PP+PA
Sbjct: 183 RKAGAERAGAGPTLTPPLPAGSPDPPSPA 211
>gi|239743097 PREDICTED: similar to hCG1644697 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 64 FCRMRGSRLTGGRKGFGSSG 83
F RGSRLTG RKG G+ G
Sbjct: 70 FVSFRGSRLTGERKGVGTEG 89
>gi|239508749 PREDICTED: similar to hCG1644697 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 64 FCRMRGSRLTGGRKGFGSSG 83
F RGSRLTG RKG G+ G
Sbjct: 70 FVSFRGSRLTGERKGVGTEG 89
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 29.6 bits (65), Expect = 2.6
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 74 GGRKGFGSSGLRFGRGGF 91
GGR GFG G R GRGGF
Sbjct: 13 GGRGGFGDRGGRGGRGGF 30
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 29.6 bits (65), Expect = 2.6
Identities = 38/149 (25%), Positives = 49/149 (32%), Gaps = 21/149 (14%)
Query: 88 RGGFSEEVMPQPVLKAMRCAEGAWWFSPDGPAGSAASIWPAEGAEGL-PGQLG----RDR 142
RGG + P PV + A W PAGS W AE EG P +G R
Sbjct: 1597 RGGLVGQA-PMPVPEEKEPASSPWASGEKPPAGSEQDGWKAEPGEGTRPATVGDSSARPA 1655
Query: 143 LEVVYSVPD---NVPG----QNGSRRPLVCKITGKCLSVCSEENAKAGGCSAFPLLLSQL 195
V+ P PG +G R P C S++ A P L
Sbjct: 1656 RRVLLPTPPCGALQPGFPLQHDGERDPFTCP------GFASQDKALGSAQYEDPRNLHSA 1709
Query: 196 G--ARMTGREHAHKGPELTTPDSGLPRPP 222
G + G + P+ + P PP
Sbjct: 1710 GRSSSPAGETEGDREPQARPGEGTAPLPP 1738
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 29.6 bits (65), Expect = 2.6
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 115 PDGPAGSAASIWPAEGAEGLPGQLGRDRLEVVYSVP--------DNVPGQNGSR 160
P GP G EG GLPG GRD + + VP +PG+NG +
Sbjct: 832 PPGPIGP-------EGPRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEK 878
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 29.6 bits (65), Expect = 2.6
Identities = 34/128 (26%), Positives = 42/128 (32%), Gaps = 22/128 (17%)
Query: 58 REARRQFCRMRGSRLTGGRKGFGSSGLRFGRGGFSE-----EVMPQPVL----------- 101
R+ R + G+ GGR G+SG R G GG E + +P PV
Sbjct: 55 RKRRDEAAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQ 114
Query: 102 -----KAMRCAEGAWWFSPDGPAGSAASIWPAEGAEGLPGQLGRDRLEVVYSVPDNVPGQ 156
+ R E W GP G E P + R PD PG
Sbjct: 115 APGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGD 174
Query: 157 NGSR-RPL 163
R RPL
Sbjct: 175 RFDRDRPL 182
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 108 EGAWWFSPDGPAGSAASIWPAEGAEGLPGQLG 139
+G W FSP+G G+ ++ G G PG G
Sbjct: 521 DGPWCFSPEGAQGAGGVLFAPFGRAGAPGPGG 552
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 130 GAEGLPGQLGRDRLEVVYSVPDNVPGQNGSRR----PLVCKITGKCLSVCSEENAKAGGC 185
G GLPG G L ++ P PGQ G+R P + GK + + G
Sbjct: 128 GRPGLPGSPGDAGLSIIG--PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGP 185
Query: 186 SAFPLLLSQLGARMTGREHAHKGPELTTPDSGLPRPPNP 224
P Q G + E+ H+G + G P PP P
Sbjct: 186 PGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGP 224
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 29.3 bits (64), Expect = 3.4
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 173 SVCSEENAKAGGCSAFPLLLSQLGARMTGREHAHKGPELTTPDSGLPRPPNPALAGFRAL 232
S CS G + P + G G +GP T S PRPP P L R +
Sbjct: 80 SSCSGSQRDIGSTESPPARTLRRGEGRGGPAQGARGPTPTPRGSAPPRPPGPHL---RVV 136
Query: 233 AQH 235
A H
Sbjct: 137 AAH 139
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,691,899
Number of Sequences: 37866
Number of extensions: 701249
Number of successful extensions: 2526
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2505
Number of HSP's gapped (non-prelim): 66
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.