Guide to the Human Genome
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Name: LOC100133311 Sequence: fasta or formatted (194aa) NCBI GI: 239743097
Description:

PREDICTED: similar to hCG1644697

Not currently referenced in the text

Other entries for this name:
alt mRNA {194aa} PREDICTED: similar to hCG1644697
alt mRNA {194aa} PREDICTED: similar to hCG1644697
alt mRNA {194aa} PREDICTED: similar to hCG1644697
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         15           2
 C cysteine            3.1          6           1
 D aspartate           2.1          4           1
 E glutamate           7.2         14           2
 F phenylalanine       4.1          8           1
 G glycine            11.3         22           2
 H histidine           2.6          5           1
 I isoleucine          1.5          3           1
 K lysine              1.5          3           1
 L leucine             9.8         19           1
 M methionine          0.5          1           1
 N asparagine          1.5          3           1
 P proline             7.2         14           1
 Q glutamine           4.1          8           1
 R arginine           11.3         22           2
 S serine             12.4         24           2
 T threonine           5.2         10           1
 V valine              3.6          7           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644697 
LOC100133311          1.000   PREDICTED: similar to hCG1644697 
LOC100133311          1.000   PREDICTED: similar to hCG1644697 
LOC100133311          1.000   PREDICTED: similar to hCG1644697 
LOC388849             0.021   PREDICTED: similar to hCG1732289 
LOC388849             0.021   PREDICTED: similar to hCG1732289 
LOC388849             0.021   PREDICTED: similar to hCG1732289 
PCNXL3                0.019   pecanex-like 3 
DDX3Y                 0.019   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.019   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
FN1                   0.016   fibronectin 1 isoform 3 preproprotein 
FN1                   0.016   fibronectin 1 isoform 1 preproprotein 
FN1                   0.016   fibronectin 1 isoform 4 preproprotein 
FN1                   0.016   fibronectin 1 isoform 5 preproprotein 
FN1                   0.016   fibronectin 1 isoform 2 preproprotein 
FN1                   0.016   fibronectin 1 isoform 6 preproprotein 
TTRAP                 0.016   TRAF and TNF receptor-associated protein 
PCOLCE2               0.016   procollagen C-endopeptidase enhancer 2 
HR                    0.013   hairless protein isoform a 
HR                    0.013   hairless protein isoform b 
CACNG5                0.013   voltage-dependent calcium channel gamma-5 subunit iso...
LOC100292592          0.013   PREDICTED: hypothetical protein 
LOC100289939          0.013   PREDICTED: hypothetical protein XP_002347821 
LOC100288866          0.013   PREDICTED: hypothetical protein XP_002343571 
HMCN1                 0.013   hemicentin 1 
DDX3X                 0.013   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
SLC22A18AS            0.013   solute carrier family 22 (organic cation transporte...
DCC                   0.011   deleted in colorectal carcinoma 
ITGA7                 0.011   integrin alpha 7 isoform 3 
ITGA7                 0.011   integrin alpha 7 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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