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Search of human proteins with 19743571
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19743571 TRAF interacting protein TANK isoform b [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19743571 TRAF interacting protein TANK isoform b [Homo sapiens] 233 3e-62
gi|19743569 TRAF interacting protein TANK isoform a [Homo sapiens] 218 8e-58
gi|197313707 5-azacytidine induced 2 isoform c [Homo sapiens] 43 6e-05
gi|197313705 5-azacytidine induced 2 isoform b [Homo sapiens] 43 6e-05
gi|11968003 5-azacytidine induced 2 isoform a [Homo sapiens] 43 6e-05
gi|134152694 guanylate cyclase 2F [Homo sapiens] 35 0.010
gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Hom... 34 0.022
gi|62243374 MAD1-like 1 protein [Homo sapiens] 34 0.029
gi|62243369 MAD1-like 1 protein [Homo sapiens] 34 0.029
gi|62243332 MAD1-like 1 protein [Homo sapiens] 34 0.029
gi|117414154 sodium channel associated protein 2 isoform b [Homo... 34 0.029
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 34 0.029
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 33 0.038
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 33 0.038
gi|45505178 cancer antigen 1 [Homo sapiens] 33 0.050
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 0.065
gi|114155146 tropomyosin 3 isoform 3 [Homo sapiens] 33 0.065
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 32 0.085
gi|38348356 testis expressed 9 [Homo sapiens] 32 0.085
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 32 0.11
gi|13540600 nudE nuclear distribution gene E homolog (A. nidulan... 32 0.14
gi|71284108 nudE nuclear distribution gene E homolog (A. nidulan... 32 0.14
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 31 0.19
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 31 0.19
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 31 0.19
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 31 0.19
gi|194306660 coiled-coil domain containing 77 isoform b [Homo sa... 31 0.19
gi|194306658 coiled-coil domain containing 77 isoform b [Homo sa... 31 0.19
gi|14150165 coiled-coil domain containing 77 isoform a [Homo sap... 31 0.19
>gi|19743571 TRAF interacting protein TANK isoform b [Homo sapiens]
Length = 119
Score = 233 bits (594), Expect = 3e-62
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS
Sbjct: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
Query: 61 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDIASAESSI 119
QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDIASAESSI
Sbjct: 61 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDIASAESSI 119
>gi|19743569 TRAF interacting protein TANK isoform a [Homo sapiens]
Length = 425
Score = 218 bits (555), Expect = 8e-58
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS
Sbjct: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
Query: 61 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKV 110
QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKV
Sbjct: 61 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKV 110
>gi|197313707 5-azacytidine induced 2 isoform c [Homo sapiens]
Length = 232
Score = 42.7 bits (99), Expect = 6e-05
Identities = 17/56 (30%), Positives = 37/56 (66%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQL 62
EQ+NKAY A+R+ C+DRD+ +L + ++ + ++ EQL ++ + +L++++
Sbjct: 87 EQVNKAYHAYREVCIDRDNLKSKLDKMNKDNSESLKVLNEQLQSKEVELLQLRTEV 142
>gi|197313705 5-azacytidine induced 2 isoform b [Homo sapiens]
Length = 243
Score = 42.7 bits (99), Expect = 6e-05
Identities = 17/56 (30%), Positives = 37/56 (66%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQL 62
EQ+NKAY A+R+ C+DRD+ +L + ++ + ++ EQL ++ + +L++++
Sbjct: 87 EQVNKAYHAYREVCIDRDNLKSKLDKMNKDNSESLKVLNEQLQSKEVELLQLRTEV 142
>gi|11968003 5-azacytidine induced 2 isoform a [Homo sapiens]
Length = 392
Score = 42.7 bits (99), Expect = 6e-05
Identities = 17/56 (30%), Positives = 37/56 (66%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQL 62
EQ+NKAY A+R+ C+DRD+ +L + ++ + ++ EQL ++ + +L++++
Sbjct: 87 EQVNKAYHAYREVCIDRDNLKSKLDKMNKDNSESLKVLNEQLQSKEVELLQLRTEV 142
>gi|134152694 guanylate cyclase 2F [Homo sapiens]
Length = 1108
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 24 DSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNYGC 75
DS ++ L+Q + N E IRE+ E+L +++ +KL +Q+L + + GC
Sbjct: 822 DSMLRMLEQYSSNLEDLIRERTEELEIEKQKTEKLLTQMLPPSVAESLKKGC 873
>gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Homo
sapiens]
Length = 1103
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 24 DSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLL 63
DS ++ L+Q + N E IRE+ E+L L++ D+L +Q+L
Sbjct: 818 DSMLRMLEQYSSNLEDLIRERTEELELEKQKTDRLLTQML 857
>gi|62243374 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTE---NYEQRIREQQEQLSLQQ---TIIDKLKS 60
++L + + + C + + ++ELQ E ++EQ+I++ +++LSLQ+ I+ +KS
Sbjct: 188 QELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKS 247
Query: 61 QLL 63
+L+
Sbjct: 248 ELV 250
>gi|62243369 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTE---NYEQRIREQQEQLSLQQ---TIIDKLKS 60
++L + + + C + + ++ELQ E ++EQ+I++ +++LSLQ+ I+ +KS
Sbjct: 188 QELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKS 247
Query: 61 QLL 63
+L+
Sbjct: 248 ELV 250
>gi|62243332 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTE---NYEQRIREQQEQLSLQQ---TIIDKLKS 60
++L + + + C + + ++ELQ E ++EQ+I++ +++LSLQ+ I+ +KS
Sbjct: 188 QELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKS 247
Query: 61 QLL 63
+L+
Sbjct: 248 ELV 250
>gi|117414154 sodium channel associated protein 2 isoform b [Homo
sapiens]
Length = 939
Score = 33.9 bits (76), Expect = 0.029
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 7 EQLNKAYEAFRQACMDR-------DSAVKELQQKTENYEQRIR-EQQEQLSLQQTIIDKL 58
E++ KAY + D+ ++ VKE+++K EN E++++ E+ + + LQ+ ++KL
Sbjct: 801 EEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKL 860
Query: 59 KS 60
S
Sbjct: 861 HS 862
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 23 RDSAVKELQQKTENYEQRIREQQEQLS-LQQTIID 56
+D+ KE+ ++ + +EQ I+E QE++ L Q +D
Sbjct: 511 QDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMD 545
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 33.9 bits (76), Expect = 0.029
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 7 EQLNKAYEAFRQACMDR-------DSAVKELQQKTENYEQRIR-EQQEQLSLQQTIIDKL 58
E++ KAY + D+ ++ VKE+++K EN E++++ E+ + + LQ+ ++KL
Sbjct: 894 EEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKL 953
Query: 59 KS 60
S
Sbjct: 954 HS 955
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 23 RDSAVKELQQKTENYEQRIREQQEQLS-LQQTIID 56
+D+ KE+ ++ + +EQ I+E QE++ L Q +D
Sbjct: 604 QDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMD 638
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 8 QLNKAYEAF---RQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL 64
QL KA EA + +R +A+++++ K EQ ++E++++L KS L
Sbjct: 519 QLTKAKEALIAASETLKERKAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKS---L 575
Query: 65 VNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREK 106
V+ L + E K++L +++ + KV+ I +EK
Sbjct: 576 VHD----------LFQKVEEAKSSLAMNRSRGKVLDAIIQEK 607
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 8 QLNKAYEAF---RQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL 64
QL KA EA + +R +A+++++ K EQ ++E++++L KS L
Sbjct: 519 QLTKAKEALIAASETLKERKAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKS---L 575
Query: 65 VNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREK 106
V+ L + E K++L +++ + KV+ I +EK
Sbjct: 576 VHD----------LFQKVEEAKSSLAMNRSRGKVLDAIIQEK 607
>gi|45505178 cancer antigen 1 [Homo sapiens]
Length = 641
Score = 33.1 bits (74), Expect = 0.050
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 9 LNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNST 68
LN+ + + ++ ++ELQ E+R++E Q +++ QQ ID + V
Sbjct: 169 LNEVLQKLKHTNRKQEVRIQELQCSNLYLEKRVKELQMKITKQQVFIDVINKLKENVEEL 228
Query: 69 QDNNYGCVPLLEDSETRKNNLTLDQ 93
++ Y + LE ++T+K L++
Sbjct: 229 IEDKYKII--LEKNDTKKTLQNLEE 251
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVN 66
E+L + E Q ELQ + ++ + + EQQE+L L ++L+ L+ +
Sbjct: 473 EELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLE 532
Query: 67 STQDNNYGCVPLLEDS--ETRKNNLTLDQPQDKVISGIAREKLPKVDIASAESSI 119
+ Q + + L ++ + L Q Q +V + +AR + +++S+E+++
Sbjct: 533 AKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTL 587
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 2 DKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQL 48
++++ QL++A A Q + + A+++ QQ+ + E+R++E+ + L
Sbjct: 1798 EQSLQSQLDEAQRALAQRDQELE-ALQQEQQQAQGQEERVKEKADAL 1843
>gi|114155146 tropomyosin 3 isoform 3 [Homo sapiens]
Length = 247
Score = 32.7 bits (73), Expect = 0.065
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 3 KNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQL 62
K+I E+ ++ YE + + + ++ +++ E E R RE EQ+ L + L +
Sbjct: 116 KHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAE 175
Query: 63 LLVNSTQDNNYGCVPLLED----SETR---------KNNLTLDQPQDKVISGIAREKL 107
+ +D + +L D +ETR K T+D ++++ S + R +L
Sbjct: 176 EKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRL 233
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 32.3 bits (72), Expect = 0.085
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 43 EQQEQLSLQQTIIDKLKSQLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGI 102
E E L+L + ID + LL +S QDN+ P LED ET+K T Q + K +
Sbjct: 197 ELAETLALLKAQIDPV---LLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKESEKM 253
Query: 103 AREKLP 108
E+ P
Sbjct: 254 KSEEQP 259
>gi|38348356 testis expressed 9 [Homo sapiens]
Length = 391
Score = 32.3 bits (72), Expect = 0.085
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 20 CMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQD 70
C ++ ++ L+ + +N+E+ QQ +++QQ+ ++K K+ N D
Sbjct: 215 CNKKEDEIQNLKSQVKNFEEDFMRQQRTINMQQSQVEKYKTLFEEANKKYD 265
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/106 (22%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 2 DKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQ 61
++ + EQ + +E + C +++ ++E +++ E+R+REQ+E+L Q+ + + + +
Sbjct: 268 EERLREQEERLHEQEERLC-EQEERLREQEERLCEQEERLREQEERLCEQEERLREQEER 326
Query: 62 LLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKL 107
L Q+ G LLE+ E + Q++++ RE+L
Sbjct: 327 L----CEQEKLPGQERLLEEVEKLLEQERRQEEQERLLE---RERL 365
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 3 KNIGEQLNKAYEAFRQACM---DRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLK 59
+++G QL E + + ++ ++E +++ E+R+REQ+E+L Q+ ++L+
Sbjct: 174 ESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEERLREQEERLCEQE---ERLR 230
Query: 60 SQ 61
Q
Sbjct: 231 EQ 232
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQ 52
E+L + E R+ ++ ++E +++ E+R+REQ+E+L Q+
Sbjct: 199 ERLREQEERLRE----QEERLREQEERLCEQEERLREQEERLREQE 240
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQ 52
E+L + E R+ ++ + E +++ E+R+REQ+E+L Q+
Sbjct: 206 ERLREQEERLRE----QEERLCEQEERLREQEERLREQEERLCEQE 247
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 32.0 bits (71), Expect = 0.11
Identities = 13/61 (21%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 2 DKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQ 61
++ +GEQ K +E + +++ ++ ++K E++IREQ+E++ Q+ ++ + + +
Sbjct: 410 EEKMGEQEEKMWEQ-EEEMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEK 468
Query: 62 L 62
+
Sbjct: 469 M 469
Score = 29.3 bits (64), Expect = 0.72
Identities = 13/61 (21%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 2 DKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQ 61
++ +GEQ K E +++ ++ ++K E++IREQ+E++ Q+ ++ + + +
Sbjct: 466 EEKMGEQEGKMCEQ-EAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEK 524
Query: 62 L 62
+
Sbjct: 525 M 525
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTII 55
E N+ + + ++ ++E ++K + E++IREQ+E++ Q+ ++
Sbjct: 277 ELWNRLNQQQEEKMWRQEEKIQEREEKIQEQEEKIREQEEKMRRQEEMM 325
>gi|13540600 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform B [Homo sapiens]
Length = 345
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 5 IGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL 64
I EQL+K QA D + A + E++EQR+ + E+ + ++ +D+ +S L+
Sbjct: 107 IKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVS 166
Query: 65 VNSTQD 70
V +D
Sbjct: 167 VQRLKD 172
>gi|71284108 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform A [Homo sapiens]
Length = 328
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 5 IGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL 64
I EQL+K QA D + A + E++EQR+ + E+ + ++ +D+ +S L+
Sbjct: 107 IKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVS 166
Query: 65 VNSTQD 70
V +D
Sbjct: 167 VQRLKD 172
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 23 RDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNYGCVPLLEDS 82
RD +E Q++ +NY++ +++ +E++SL Q + + ++ LL + ++ L +DS
Sbjct: 636 RDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKE-HASSLASSGLKKDS 694
Query: 83 ETRKNNLTLDQPQDKVISGIAREKLPKVDIASAES 117
+ + L+Q +++ + +L K A+ E+
Sbjct: 695 RLKTLEIALEQKKEECLK--MESQLKKAHEAALEA 727
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 23 RDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNYGCVPLLEDS 82
++ V LQ+K EN ++++R++++Q+S LK ++ + + N + LE++
Sbjct: 569 KERKVNVLQKKIENLQEQLRDKEKQMS-------SLKERVKSLQADTTNTDTALTTLEEA 621
Query: 83 ETRKNNL--TLDQPQDKVISGIAREKLPKVD 111
K L + +D+ REK ++D
Sbjct: 622 LAEKERTIERLKEQRDR----DEREKQEEID 648
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 23 RDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNYGCVPLLEDS 82
RD +E Q++ +NY++ +++ +E++SL Q + + ++ LL + ++ L +DS
Sbjct: 608 RDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKE-HASSLASSGLKKDS 666
Query: 83 ETRKNNLTLDQPQDKVISGIAREKLPKVDIASAES 117
+ + L+Q +++ + +L K A+ E+
Sbjct: 667 RLKTLEIALEQKKEECLK--MESQLKKAHEAALEA 699
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 23 RDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNYGCVPLLEDS 82
++ V LQ+K EN ++++R++++Q+S LK ++ + + N + LE++
Sbjct: 541 KERKVNVLQKKIENLQEQLRDKEKQMS-------SLKERVKSLQADTTNTDTALTTLEEA 593
Query: 83 ETRKNNL--TLDQPQDKVISGIAREKLPKVD 111
K L + +D+ REK ++D
Sbjct: 594 LAEKERTIERLKEQRDR----DEREKQEEID 620
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQL 62
E + E + S + E+Q + + + R E QEQLS ++ ++ +LKS+L
Sbjct: 3113 ESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSEL 3168
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 8 QLNKAYEAFRQACMDR---DSAVKELQQKTENYEQRIREQQEQL 48
+L K E RQ ++ + V+ELQ KTE E++++E++ L
Sbjct: 723 ELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDL 766
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/53 (24%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 21 MDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNY 73
++++ + ELQ+ E E++ RE++++ S Q ++ LK+ L +S +++ +
Sbjct: 2637 LEKEKKLLELQKLLEGNEKKQREKEKKRSPQD--VEVLKTTTELFHSNEESGF 2687
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQL 62
E + E + S + E+Q + + + R E QEQLS ++ ++ +LKS+L
Sbjct: 3105 ESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSEL 3160
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 8 QLNKAYEAFRQACMDR---DSAVKELQQKTENYEQRIREQQEQL 48
+L K E RQ ++ + V+ELQ KTE E++++E++ L
Sbjct: 723 ELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDL 766
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/53 (24%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 21 MDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVNSTQDNNY 73
++++ + ELQ+ E E++ RE++++ S Q ++ LK+ L +S +++ +
Sbjct: 2629 LEKEKKLLELQKLLEGNEKKQREKEKKRSPQD--VEVLKTTTELFHSNEESGF 2679
>gi|194306660 coiled-coil domain containing 77 isoform b [Homo
sapiens]
Length = 456
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVN 66
E L K E +++AC + +LQQ+ E+ I E Q+ LS Q + + + +L +
Sbjct: 42 EDLLKKLELYKEACEGQHKLECDLQQR----EEEIAELQKALSDMQVCLFQEREHVLRLY 97
Query: 67 STQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDI 112
S +N+ + LED + +N L L ++ +E KV I
Sbjct: 98 S--ENDRLRIRELEDKKKIQNLLALVGTDAGEVTYFCKEPPHKVTI 141
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
+ +GEQ + E DR ++E+Q + + + +I+E + L Q ++ +
Sbjct: 196 LQAQLGEQTKLSREQIEGLIEDRRIHLEEIQVQHQRNQNKIKELTKNLHHTQELLYESTK 255
Query: 61 QLLLVNSTQDNNYGCVPLLED---SETRKNNLTLDQPQDKV 98
L + S N L +D S+ ++ + + +DK+
Sbjct: 256 DFLQLRSENQNKEKSWMLEKDNLMSKIKQYRVQCKKKEDKI 296
>gi|194306658 coiled-coil domain containing 77 isoform b [Homo
sapiens]
Length = 456
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVN 66
E L K E +++AC + +LQQ+ E+ I E Q+ LS Q + + + +L +
Sbjct: 42 EDLLKKLELYKEACEGQHKLECDLQQR----EEEIAELQKALSDMQVCLFQEREHVLRLY 97
Query: 67 STQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDI 112
S +N+ + LED + +N L L ++ +E KV I
Sbjct: 98 S--ENDRLRIRELEDKKKIQNLLALVGTDAGEVTYFCKEPPHKVTI 141
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
+ +GEQ + E DR ++E+Q + + + +I+E + L Q ++ +
Sbjct: 196 LQAQLGEQTKLSREQIEGLIEDRRIHLEEIQVQHQRNQNKIKELTKNLHHTQELLYESTK 255
Query: 61 QLLLVNSTQDNNYGCVPLLED---SETRKNNLTLDQPQDKV 98
L + S N L +D S+ ++ + + +DK+
Sbjct: 256 DFLQLRSENQNKEKSWMLEKDNLMSKIKQYRVQCKKKEDKI 296
>gi|14150165 coiled-coil domain containing 77 isoform a [Homo
sapiens]
Length = 488
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 7 EQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLLVN 66
E L K E +++AC + +LQQ+ E+ I E Q+ LS Q + + + +L +
Sbjct: 74 EDLLKKLELYKEACEGQHKLECDLQQR----EEEIAELQKALSDMQVCLFQEREHVLRLY 129
Query: 67 STQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDI 112
S +N+ + LED + +N L L ++ +E KV I
Sbjct: 130 S--ENDRLRIRELEDKKKIQNLLALVGTDAGEVTYFCKEPPHKVTI 173
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 1 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS 60
+ +GEQ + E DR ++E+Q + + + +I+E + L Q ++ +
Sbjct: 228 LQAQLGEQTKLSREQIEGLIEDRRIHLEEIQVQHQRNQNKIKELTKNLHHTQELLYESTK 287
Query: 61 QLLLVNSTQDNNYGCVPLLED---SETRKNNLTLDQPQDKV 98
L + S N L +D S+ ++ + + +DK+
Sbjct: 288 DFLQLRSENQNKEKSWMLEKDNLMSKIKQYRVQCKKKEDKI 328
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,669,946
Number of Sequences: 37866
Number of extensions: 135961
Number of successful extensions: 2000
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 824
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.