Guide to the Human Genome
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Name: TANK Sequence: fasta or formatted (119aa) NCBI GI: 19743571
Description:

TRAF interacting protein TANK isoform b

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [425aa] TRAF interacting protein TANK isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          7           1
 C cysteine            1.7          2           1
 D aspartate           7.6          9           1
 E glutamate           9.2         11           1
 F phenylalanine       0.8          1           1
 G glycine             2.5          3           1
 H histidine           0.0          0           0
 I isoleucine          6.7          8           2
 K lysine              8.4         10           1
 L leucine            10.9         13           3
 M methionine          1.7          2           1
 N asparagine          6.7          8           2
 P proline             2.5          3           1
 Q glutamine          11.8         14           2
 R arginine            5.0          6           1
 S serine              7.6          9           2
 T threonine           4.2          5           1
 V valine              4.2          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TRAF interacting protein TANK isoform b 
TANK                  0.928   TRAF interacting protein TANK isoform a 
AZI2                  0.087   5-azacytidine induced 2 isoform c 
AZI2                  0.087   5-azacytidine induced 2 isoform b 
AZI2                  0.087   5-azacytidine induced 2 isoform a 
GUCY2F                0.048   guanylate cyclase 2F 
GUCY2D                0.043   guanylate cyclase 2D, membrane (retina-specific) [Hom...
MAD1L1                0.043   MAD1-like 1 protein 
MAD1L1                0.043   MAD1-like 1 protein 
MAD1L1                0.043   MAD1-like 1 protein 
LRRCC1                0.043   sodium channel associated protein 2 isoform b [Homo...
LRRCC1                0.043   sodium channel associated protein 2 isoform a [Homo...
SMC4                  0.038   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.038   SMC4 structural maintenance of chromosomes 4-like 1 ...
CAGE1                 0.038   cancer antigen 1 
CEP250                0.038   centrosomal protein 2 
TPM3                  0.038   tropomyosin 3 isoform 3 
RSF1                  0.034   remodeling and spacing factor 1 
TEX9                  0.034   testis expressed 9 
LOC100133220          0.034   PREDICTED: hypothetical protein 
LOC645202             0.034   PREDICTED: hypothetical protein LOC645202 
NDEL1                 0.034   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.034   nudE nuclear distribution gene E homolog (A. nidulan...
ERC1                  0.029   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.029   RAB6-interacting protein 2 isoform delta 
AKAP9                 0.029   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.029   A-kinase anchor protein 9 isoform 3 
CCDC77                0.029   coiled-coil domain containing 77 isoform b 
CCDC77                0.029   coiled-coil domain containing 77 isoform b 
CCDC77                0.029   coiled-coil domain containing 77 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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