Search of human proteins with 197245386

Search of human proteins with 197245386

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197245386 hypothetical protein LOC387856 [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197245386 hypothetical protein LOC387856 [Homo sapiens]            392   e-110
gi|11560152 zinc finger protein 335 [Homo sapiens]                     36   0.018
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]    36   0.018
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             36   0.023
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             36   0.023
gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]                35   0.040
gi|89257348 homeo box HB9 [Homo sapiens]                               35   0.052
gi|222144283 hypothetical protein LOC65998 [Homo sapiens]              34   0.068
gi|11415052 retinoid X receptor, beta [Homo sapiens]                   34   0.089
gi|11386139 phospholipase C beta 3 [Homo sapiens]                      34   0.089
gi|100913211 heat shock transcription factor 4 isoform a [Homo s...    34   0.089
gi|18496983 CAP-GLY domain containing linker protein 3 [Homo sap...    34   0.089
gi|156071474 solute carrier family 4, anion exchanger, member 2 ...    33   0.12 
gi|222136641 NIMA-related kinase 9 [Homo sapiens]                      33   0.15 
gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens]      33   0.15 
gi|21450838 SH3 and cysteine rich domain 3 [Homo sapiens]              33   0.15 
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...    33   0.20 
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         33   0.20 
gi|4503249 DEK oncogene isoform 1 [Homo sapiens]                       33   0.20 
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]      33   0.20 
gi|6912398 general transcription factor IIIC, polypeptide 3, 102...    33   0.20 
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             32   0.26 
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F...    32   0.26 
gi|113204622 stromal membrane-associated GTPase-activating prote...    32   0.26 
gi|5032033 RNA binding motif protein 6 [Homo sapiens]                  32   0.26 
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      32   0.34 
gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapi...    32   0.34 
gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapi...    32   0.34 
gi|24431933 reticulon 4 isoform B [Homo sapiens]                       32   0.44 
gi|47519490 reticulon 4 isoform D [Homo sapiens]                       32   0.44 

>gi|197245386 hypothetical protein LOC387856 [Homo sapiens]
          Length = 194

 Score =  392 bits (1008), Expect = e-110
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRA 60
           MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRA
Sbjct: 1   MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRA 60

Query: 61  MRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPET 120
           MRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPET
Sbjct: 61  MRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPET 120

Query: 121 PSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDM 180
           PSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDM
Sbjct: 121 PSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDM 180

Query: 181 PDITLLQLEGEASL 194
           PDITLLQLEGEASL
Sbjct: 181 PDITLLQLEGEASL 194


>gi|11560152 zinc finger protein 335 [Homo sapiens]
          Length = 1342

 Score = 36.2 bits (82), Expect = 0.018
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 97  PRQGGLGVVGGKGSFQSDPQEPETPSPG---IGDSGLLGRDPEDEEEEEEEKEMPSPATP 153
           P + GLGV  G     S        +PG     DSG+          +EE  E  S A P
Sbjct: 22  PSESGLGV--GTSEAVSADSSDAAAAPGQAEADDSGVGQSSDRGSRSQEEVSESSSSADP 79

Query: 154 SSHCERPES------PCAGLLGGDGPLVEPLDMPDITLLQLEGEAS 193
             +   P+S      P AG+ GG   LV    +PD  +L  +  AS
Sbjct: 80  LPNSYLPDSSSVSHGPVAGVTGGPPALVHSSALPDPNMLVSDCTAS 125


>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
          Length = 1009

 Score = 36.2 bits (82), Expect = 0.018
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)

Query: 11  KDGGDMPAPLE-VSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQA 69
           K  G +PAP +  +++  + DV S   N  M+  ++ L  Q ++L ED+RA +  L EQ 
Sbjct: 553 KSTGPVPAPPDRAASIDLLEDVFS---NLDMEAALQPL-GQAKSL-EDLRAPKD-LREQP 606

Query: 70  SHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQ--EPETPSPGIGD 127
                   D+  ++R+      +  T P      +     +  S P    PE PS  +G+
Sbjct: 607 GTFDYQRLDLGGSERSRGVTVALKLTHPYNKLWSLGQDDMAIPSKPPAASPEKPSALLGN 666

Query: 128 SGLLGRDPEDEE---EEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDMPDIT 184
           S  L R P++ +      +++E+P+P   S    RP+      LG    +V P  +P   
Sbjct: 667 SLALPRRPQNRDSILNPSDKEEVPTPTLGSITIPRPQGRKTPELG----IVPPPPIPRPA 722

Query: 185 LLQLEGEA 192
            LQ  G A
Sbjct: 723 KLQAAGAA 730


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 100 GGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCER 159
           GG GV GG+    S+P  PE+ S         G D ++EE++EEE++  S    SS    
Sbjct: 70  GGGGVGGGEAETMSEPS-PESASQA-------GEDEDEEEDDEEEEDESS----SSGGGE 117

Query: 160 PESPCAGLLGGDG 172
            ES    L+G  G
Sbjct: 118 EESSAESLVGSSG 130



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 100 GGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCER 159
           GG G VGG         E ET S    +S     + EDEEE++EE+E  S ++     E 
Sbjct: 69  GGGGGVGG--------GEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES 120

Query: 160 PESPCAGLLGG 170
                 G  GG
Sbjct: 121 SAESLVGSSGG 131



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 122 SPGIGDSGLLGRDPEDEEEEEEEKEMPSPA 151
           SPG    G      E+EEEEEEE+E  + A
Sbjct: 24  SPGSAARGRAEPPEEEEEEEEEEEEAEAEA 53


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 100 GGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCER 159
           GG GV GG+    S+P  PE+ S         G D ++EE++EEE++  S    SS    
Sbjct: 70  GGGGVGGGEAETMSEPS-PESASQA-------GEDEDEEEDDEEEEDESS----SSGGGE 117

Query: 160 PESPCAGLLGGDG 172
            ES    L+G  G
Sbjct: 118 EESSAESLVGSSG 130



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 100 GGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCER 159
           GG G VGG         E ET S    +S     + EDEEE++EE+E  S ++     E 
Sbjct: 69  GGGGGVGG--------GEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES 120

Query: 160 PESPCAGLLGG 170
                 G  GG
Sbjct: 121 SAESLVGSSGG 131



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 122 SPGIGDSGLLGRDPEDEEEEEEEKEMPSPA 151
           SPG    G      E+EEEEEEE+E  + A
Sbjct: 24  SPGSAARGRAEPPEEEEEEEEEEEEAEAEA 53


>gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]
          Length = 450

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 115 PQEPETPSPGIGDS-GLLGRDPEDEEEEEEEKE--------MPSPATPSSHCERP 160
           P     P+ G G   G+ G  PEDE EEEEE+E           P +P+S C  P
Sbjct: 272 PSWAALPNSGQGQKEGVCGASPEDEAEEEEEEEEEEEECEPQAVPVSPASACSPP 326


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 91  QIMTTAPRQGGLGVVGGKGSFQSDPQEPETPSPGIGDSG-------LLGRDPEDEEEEEE 143
           Q    A +Q G G   GKG  +    E     P  GD G       L   DPE++E+E++
Sbjct: 305 QAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRDLRDSDPEEDEDEDD 364

Query: 144 EKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDMP 181
           E   P     S H     S C+     D P   P   P
Sbjct: 365 EDHFPYSNGASVHA--ASSDCSS--EDDSPPPRPSHQP 398


>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
          Length = 678

 Score = 34.3 bits (77), Expect = 0.068
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 115 PQEPETPSP----GIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERP 160
           P+ P+ P P       D G  G D E+E EEEEE+    P +P +  ERP
Sbjct: 495 PESPQGPIPPGTAAASDEG--GGDEEEEPEEEEEEWGDVPLSPGAPLERP 542



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 129 GLLGRDPEDEEEEEEEKEMPS-PATPSSHCERPESPCAGLLGG 170
           G+ G + E+EEEEEEE+E    PA P      P+ P     GG
Sbjct: 183 GVQGAEEEEEEEEEEEEEGAGVPACP------PKGPGKAPAGG 219


>gi|11415052 retinoid X receptor, beta [Homo sapiens]
          Length = 533

 Score = 33.9 bits (76), Expect = 0.089
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 97  PRQGGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSH 156
           P       V G      +P+  E    G+GDSG   R P+        + +P P+ P   
Sbjct: 45  PAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGP- 103

Query: 157 CERPESPCAGLLGGDGPLVEPLDMPDI 183
              P S    L G   P   P+  P +
Sbjct: 104 -PLPPSTAPSLGGSGAPPPPPMPPPPL 129


>gi|11386139 phospholipase C beta 3 [Homo sapiens]
          Length = 1234

 Score = 33.9 bits (76), Expect = 0.089
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 121 PSPGIGDSGL------LG-RDPEDEEEEEEEKEMPSPATPSS 155
           P   +GD GL      LG  D EDEEE+EEE+E   P  P++
Sbjct: 534 PQKSLGDEGLNRGPYVLGPADREDEEEDEEEEEQTDPKKPTT 575


>gi|100913211 heat shock transcription factor 4 isoform a [Homo
           sapiens]
          Length = 462

 Score = 33.9 bits (76), Expect = 0.089
 Identities = 50/198 (25%), Positives = 72/198 (36%), Gaps = 27/198 (13%)

Query: 6   LEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGAL 65
           L +M  +G   P P + +T P  G ++   Y           + Q+ AL         AL
Sbjct: 209 LSLMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQSPSTYSLSQRQIWAL---------AL 259

Query: 66  DEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVV----GGKGSFQSD-PQEPET 120
               +   + S       R    +  +M  AP    + VV     GKGSF  + P+  + 
Sbjct: 260 TGPGAPSSLTSQKTLHPLRGPGFLPPVMAGAPPPLPVAVVQAILEGKGSFSPEGPRNAQQ 319

Query: 121 PSPG----IGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVE 176
           P PG    I D G LG   E  +   E    P    P      P  P   L    GP ++
Sbjct: 320 PEPGDPREIPDRGPLGL--ESGDRSPESLLPPMLLQPPQESVEPAGPLDVL----GPSLQ 373

Query: 177 PLDMPDITLLQLEGEASL 194
             +    TL+ L+ E SL
Sbjct: 374 GREW---TLMDLDMELSL 388


>gi|18496983 CAP-GLY domain containing linker protein 3 [Homo
           sapiens]
          Length = 547

 Score = 33.9 bits (76), Expect = 0.089
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 127 DSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESP 163
           D   +   P  EEEEEEE++ P P  PS   ER + P
Sbjct: 5   DPAPMAPPPRGEEEEEEEEDEPVPEAPSPTQERRQKP 41


>gi|156071474 solute carrier family 4, anion exchanger, member 2
           (erythrocyte membrane protein band 3-like 1) [Homo
           sapiens]
          Length = 1241

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 19/94 (20%)

Query: 74  VLSDDVCANQRAIVSMCQIMTTA----------PRQ---GGLGVVGGKGSFQSDPQEPET 120
           V+SD + A  RA V    ++  +          PR    G LG + G    Q    +P  
Sbjct: 406 VISDQIKAEDRANVLRALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHV 465

Query: 121 PSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPS 154
             P      L+G  PE   E E E+E+P PA P+
Sbjct: 466 TEP------LMGGVPETRLEVERERELPPPAPPA 493


>gi|222136641 NIMA-related kinase 9 [Homo sapiens]
          Length = 979

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 73  QVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLG 132
           +VL+     +  + +S+  +  ++   GG G  GG G  +   QE ETP P  G  G + 
Sbjct: 726 KVLNSKTIRSNSSGLSIGTVFQSSSPGGGGG--GGGGEEEDSQQESETPDPSGGFRGTM- 782

Query: 133 RDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDMPD 182
                 E +   + + SP     +     S C G L  +    E + MPD
Sbjct: 783 ------EADRGMEGLISPTEAMGNSNGASSSCPGWLRKELENAEFIPMPD 826


>gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens]
          Length = 510

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 43  LMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIV----SMCQIMTTAPR 98
           +++ L +++ +  ED   +   +D     I+   +  C+ Q AI+    S    +  AP 
Sbjct: 378 IIDGLLSKILSECEDADEIEYLVDGSWCPIRAEKERSCSPQGAILVLGPSDANGLLPAPS 437

Query: 99  QGGLGVVGGKGSFQSDPQEPETPSPGIG------DSGLLGRDPEDEEEEEEEKEMPSPAT 152
             G G +G  G         E   PG        DS     D E+EEEEEE+++   P  
Sbjct: 438 VNGSGALGSTGG-GGPVGSMENGKPGADVVDLTLDSSSSSEDEEEEEEEEEDEDEEGP-R 495

Query: 153 PSSHC 157
           P   C
Sbjct: 496 PKRRC 500


>gi|21450838 SH3 and cysteine rich domain 3 [Homo sapiens]
          Length = 364

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 115 PQEPETPSPGIG-DSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERP 160
           P EP+     +G   G +    E+EEEEEEE+E P P  P    ++P
Sbjct: 43  PPEPQANGEAVGAGGGPIYYIYEEEEEEEEEEEEPPPEPPKLVNDKP 89


>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
           [Homo sapiens]
          Length = 471

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)

Query: 88  SMCQIMTTAPRQGGLG---VVGGKGSFQSDPQE----PETP----SPGIGDSGLLGRDPE 136
           S C      PR G  G   V G     Q+ P+E    P+ P     P  G  G    + E
Sbjct: 32  SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEE 91

Query: 137 DEE-------EEEEEKEMPSPATPSS 155
           DEE       EEEEE++ P P  P +
Sbjct: 92  DEEPGDPREGEEEEEEDEPDPEAPEN 117


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 117  EPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPAT---PSSHCERPE-SPCAGLLGGD 171
            E  T   G+        + E+EEEEEEE+E   PAT    S+    P  +P AG   GD
Sbjct: 1009 EEATEEAGVRGGAEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGD 1067



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 114 DPQEP--ETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGL 167
           DP EP    PS   G       + E+EEEEEEE++       S    R     AG+
Sbjct: 249 DPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGI 304


>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
          Length = 375

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 107 GKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKE 146
           G+G+      E E   PG  +      D +DEEEEEEEKE
Sbjct: 10  GEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKE 49



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 116 QEPETPSPGIGDSGLLGRDPEDEEEEEEEKEM 147
           +EPE P P          D E+EEEEE+EK +
Sbjct: 21  KEPEMPGPREESEEEEDEDDEEEEEEEKEKSL 52


>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
          Length = 471

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)

Query: 88  SMCQIMTTAPRQGGLG---VVGGKGSFQSDPQE----PETP----SPGIGDSGLLGRDPE 136
           S C      PR G  G   V G     Q+ P+E    P+ P     P  G  G    + E
Sbjct: 32  SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEE 91

Query: 137 DEE-------EEEEEKEMPSPATPSS 155
           DEE       EEEEE++ P P  P +
Sbjct: 92  DEEPGDPREGEEEEEEDEPDPEAPEN 117


>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
           [Homo sapiens]
          Length = 886

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 110 SFQSDPQEPETPSPGIGDS------GLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESP 163
           S   D  E ET S G+  S       +LG + +DEEEEEEE+E           E PE P
Sbjct: 64  SQDKDVNEGET-SDGVRKSVHKVFASMLGENEDDEEEEEEEEE------EEEEEETPEQP 116

Query: 164 CAG 166
            AG
Sbjct: 117 TAG 119


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 78  DVCANQRAIVSMCQIMTTAPRQGGLG---VVGGKGSFQSDP----QEPETPSPGIGDSGL 130
           D+   Q+   +    +  APR+       V  GK +   DP    + P+   PG G +  
Sbjct: 24  DILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASP 83

Query: 131 LGRDPEDEEEEEEEKEMPSPATPSSH-----CERPESPCAGLL-------GGDGPLVEPL 178
           L     +EEE+ E+   P     ++         P++P   L        GG GP+  P 
Sbjct: 84  LEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPP 143

Query: 179 DMP 181
             P
Sbjct: 144 GSP 146


>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
           subunit [Homo sapiens]
          Length = 1977

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 79  VCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSD----PQEPETPSPGIG---DSGLL 131
           +C N   +     I       G  G    KG  +S+    PQE E   PG+    + G  
Sbjct: 743 ICGNYILLNVFLAIAVDNLASGDAGTAKDKGGEKSNEKDLPQENEGLVPGVEKEEEEGAR 802

Query: 132 --GRDPEDEEEEEEEKE 146
             G D E+EEEEEEE+E
Sbjct: 803 REGADMEEEEEEEEEEE 819


>gi|113204622 stromal membrane-associated GTPase-activating protein
           1 isoform A [Homo sapiens]
          Length = 467

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 21/101 (20%)

Query: 115 PQEPETPSPGIG---DSGLLGRDPEDEEEEEE-EKEMPSPATP----------------- 153
           P +P   SP +    D   L ++ E ++EE++ EKE   PA P                 
Sbjct: 145 PLQPLVSSPSLQAAVDKNKLEKEKEKKKEEKKREKEPEKPAKPLTAEKLQKKDQQLEPKK 204

Query: 154 SSHCERPESPCAGLLGGDGPLVEPLDMPDITLLQLEGEASL 194
           S+  ++   P   LLG DGP V P+   + T+  L  +  +
Sbjct: 205 STSPKKAAEPTVDLLGLDGPAVAPVTNGNTTVPPLNDDLDI 245


>gi|5032033 RNA binding motif protein 6 [Homo sapiens]
          Length = 1123

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 112 QSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPE 161
           +  P  P+  +P IG  G  G D + EEEEEEE+  P     +   +R E
Sbjct: 889 EESPPPPKVVNPLIGLLGEYGGDSDYEEEEEEEQTPPPQPRTAQPQKREE 938



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 97  PRQGGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEK 145
           P  G LG  GG   ++ + +E +TP P    +    R+ + ++E EE+K
Sbjct: 900 PLIGLLGEYGGDSDYEEEEEEEQTPPPQPRTAQPQKREEQTKKENEEDK 948


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 135 PEDEEEEEEEKEMPSPATPSSHCERPESP 163
           PE+EEEEEE   + +P  P   C  P+ P
Sbjct: 899 PEEEEEEEEGAPIGTPRDPGDGCPSPDIP 927


>gi|224282119 splicing factor, arginine/serine-rich 14 [Homo
           sapiens]
          Length = 1082

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 94  TTAPRQGGLGVVGGKGSFQSDP--QEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPA 151
           TT  ++  + ++ G+  F+ +P  +E E  SP +         PE+E+E++E+    +PA
Sbjct: 857 TTGSQESPVDLMEGEAEFEDEPPPREAELESPEVM--------PEEEDEDDEDGGEEAPA 908

Query: 152 TPSSHCERPESPCAGLLG 169
              +      +P  GL G
Sbjct: 909 PGGAGKSEGSTPADGLPG 926


>gi|224282117 splicing factor, arginine/serine-rich 14 [Homo
           sapiens]
          Length = 1082

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 94  TTAPRQGGLGVVGGKGSFQSDP--QEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPA 151
           TT  ++  + ++ G+  F+ +P  +E E  SP +         PE+E+E++E+    +PA
Sbjct: 857 TTGSQESPVDLMEGEAEFEDEPPPREAELESPEVM--------PEEEDEDDEDGGEEAPA 908

Query: 152 TPSSHCERPESPCAGLLG 169
              +      +P  GL G
Sbjct: 909 PGGAGKSEGSTPADGLPG 926


>gi|24431933 reticulon 4 isoform B [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 0.44
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 113 SDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMP-------------SPATPSSHCER 159
           S    P  P P      +  R+PEDEEEEEEE+E                PA   S    
Sbjct: 11  SSSDSPPRPQPAFKYQFV--REPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPV 68

Query: 160 PESPCAG 166
           P +P AG
Sbjct: 69  PTAPAAG 75


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score = 31.6 bits (70), Expect = 0.44
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 113 SDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMP-------------SPATPSSHCER 159
           S    P  P P      +  R+PEDEEEEEEE+E                PA   S    
Sbjct: 11  SSSDSPPRPQPAFKYQFV--REPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPV 68

Query: 160 PESPCAG 166
           P +P AG
Sbjct: 69  PTAPAAG 75


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,375,303
Number of Sequences: 37866
Number of extensions: 556085
Number of successful extensions: 6908
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 5404
Number of HSP's gapped (non-prelim): 1193
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.