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Search of human proteins with 195963398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
(365 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 736 0.0
gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens] 655 0.0
gi|170784869 tetratricopeptide repeat domain 13 isoform b [Homo ... 57 3e-08
gi|170784867 tetratricopeptide repeat domain 13 isoform a [Homo ... 57 3e-08
gi|7656952 calcyclin binding protein isoform 1 [Homo sapiens] 55 1e-07
gi|60218913 calcyclin binding protein isoform 2 [Homo sapiens] 55 1e-07
gi|62243734 signal transducing adaptor family member 2 isoform 1... 54 3e-07
gi|24308141 small glutamine-rich tetratricopeptide repeat (TPR)-... 50 2e-06
gi|4506921 small glutamine-rich tetratricopeptide [Homo sapiens] 50 4e-06
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 49 9e-06
gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 48 1e-05
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 47 2e-05
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso... 47 2e-05
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 47 2e-05
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... 46 6e-05
gi|221316570 cysteine and histidine-rich domain-containing prote... 46 6e-05
gi|221316566 cysteine and histidine-rich domain-containing prote... 46 6e-05
gi|61744477 solute carrier family 3, member 2 isoform b [Homo sa... 45 1e-04
gi|61744479 solute carrier family 3, member 2 isoform d [Homo sa... 45 1e-04
gi|65506891 solute carrier family 3, member 2 isoform c [Homo sa... 45 1e-04
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 44 2e-04
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 44 2e-04
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 44 2e-04
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 44 2e-04
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 44 2e-04
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 44 2e-04
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 44 3e-04
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 736 bits (1900), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN 60
MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN
Sbjct: 1 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN 60
Query: 61 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQA 120
YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQA
Sbjct: 61 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQA 120
Query: 121 GLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE 180
GLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE
Sbjct: 121 GLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE 180
Query: 181 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 240
SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST
Sbjct: 181 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 240
Query: 241 KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN 300
KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN
Sbjct: 241 KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN 300
Query: 301 EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM 360
EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM
Sbjct: 301 EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM 360
Query: 361 EWKKY 365
EWKKY
Sbjct: 361 EWKKY 365
>gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens]
Length = 333
Score = 655 bits (1691), Expect = 0.0
Identities = 332/365 (90%), Positives = 332/365 (90%), Gaps = 32/365 (8%)
Query: 1 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN 60
MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN
Sbjct: 1 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN 60
Query: 61 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQA 120
YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLD
Sbjct: 61 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLD----------- 109
Query: 121 GLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE 180
ADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE
Sbjct: 110 ---------------------SADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE 148
Query: 181 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 240
SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST
Sbjct: 149 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 208
Query: 241 KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN 300
KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN
Sbjct: 209 KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN 268
Query: 301 EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM 360
EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM
Sbjct: 269 EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM 328
Query: 361 EWKKY 365
EWKKY
Sbjct: 329 EWKKY 333
>gi|170784869 tetratricopeptide repeat domain 13 isoform b [Homo
sapiens]
Length = 807
Score = 57.0 bits (136), Expect = 3e-08
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 30 ALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICE 89
A+ +LTKA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 182 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 240
Query: 90 YHEKNYAAALETFTEG--QKLDIETGFHRVGQAGLQL 124
+H A+E+F E QK+D + +GQA +L
Sbjct: 241 FHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYREL 277
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 30 ALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICE 89
A+E +AL+QK D Y + LGN+ A +K+L LN N+ + +G+
Sbjct: 249 AIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMML 308
Query: 90 YHEKNYAAALETFTEGQKLD 109
YH + AL+ F +L+
Sbjct: 309 YHHGSLQEALKNFKRCLQLE 328
>gi|170784867 tetratricopeptide repeat domain 13 isoform a [Homo
sapiens]
Length = 860
Score = 57.0 bits (136), Expect = 3e-08
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 30 ALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICE 89
A+ +LTKA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 235 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 293
Query: 90 YHEKNYAAALETFTEG--QKLDIETGFHRVGQAGLQL 124
+H A+E+F E QK+D + +GQA +L
Sbjct: 294 FHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYREL 330
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 30 ALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICE 89
A+E +AL+QK D Y + LGN+ A +K+L LN N+ + +G+
Sbjct: 302 AIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMML 361
Query: 90 YHEKNYAAALETFTEGQKLD 109
YH + AL+ F +L+
Sbjct: 362 YHHGSLQEALKNFKRCLQLE 381
>gi|7656952 calcyclin binding protein isoform 1 [Homo sapiens]
Length = 228
Score = 55.1 bits (131), Expect = 1e-07
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 38/170 (22%)
Query: 174 YDWYQTESQVVITLMIKNVQK---NDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPII 229
Y W Q++ V I + + V + +V V F+E+ LVK +G+ Y++ + LL PI
Sbjct: 78 YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 137
Query: 230 PEQSTFKV-LSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWD 288
E S+ KV T + + KK E RW+ L
Sbjct: 138 VEGSSKKVKTDTVLILCRKKVENTRWDYL------------------------------T 167
Query: 289 KLVGEIKEEEK---NEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMES 335
++ E KE+EK + + + L + ++IY DG D++KR +NK+++ES
Sbjct: 168 QVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 217
>gi|60218913 calcyclin binding protein isoform 2 [Homo sapiens]
Length = 185
Score = 55.1 bits (131), Expect = 1e-07
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 38/170 (22%)
Query: 174 YDWYQTESQVVITLMIKNVQK---NDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPII 229
Y W Q++ V I + + V + +V V F+E+ LVK +G+ Y++ + LL PI
Sbjct: 35 YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 94
Query: 230 PEQSTFKV-LSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWD 288
E S+ KV T + + KK E RW+ L
Sbjct: 95 VEGSSKKVKTDTVLILCRKKVENTRWDYL------------------------------T 124
Query: 289 KLVGEIKEEEK---NEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMES 335
++ E KE+EK + + + L + ++IY DG D++KR +NK+++ES
Sbjct: 125 QVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 174
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 53.5 bits (127), Expect = 3e-07
Identities = 25/33 (75%), Positives = 27/33 (81%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
+E GFH V QAGL+LLTSSDPP SQSAGITG
Sbjct: 358 VEKGFHHVAQAGLELLTSSDPPTSASQSAGITG 390
>gi|24308141 small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta [Homo sapiens]
Length = 304
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 24 DEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAML 83
+E+ AA++ T+A+E P++A YYC RA LG+Y A+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 84 RKGICEYHEKNYAAALETFTEGQKLDIETGFH----RVGQAGLQLLTSSDPPALDSQSAG 139
R G+ + A+ ++ + LD E + ++ + L+ ++S L A
Sbjct: 158 RMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMAS 217
Query: 140 ITGADANFSVWIKRCQEAQ 158
+ A S+ Q Q
Sbjct: 218 LINNPAFISMAASLMQNPQ 236
>gi|4506921 small glutamine-rich tetratricopeptide [Homo sapiens]
Length = 313
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/102 (28%), Positives = 54/102 (52%)
Query: 8 TATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVAD 67
+A ++R ++ + E+ +AA+ KA+E P +A Y+C RA + LGNY AV D
Sbjct: 88 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 147
Query: 68 AKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLD 109
++++ ++P S A R G+ + A+ + + +LD
Sbjct: 148 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 189
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 48.5 bits (114), Expect = 9e-06
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGIT 141
+ETGF V Q GL+LLTS DPP L SQSAGIT
Sbjct: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
>gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 1
[Homo sapiens]
Length = 494
Score = 48.1 bits (113), Expect = 1e-05
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 25 EDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLR 84
+D A TKA++ P +A YY RA ++LG + A+ DA++S+ L+ + LR
Sbjct: 42 KDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLR 101
Query: 85 KGICEYHEKNYAAALETFTEGQKLD 109
+G C N AA +F +LD
Sbjct: 102 EGKCHLSLGNAMAACRSFQRALELD 126
Score = 38.1 bits (87), Expect = 0.012
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 34 LTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICEYHEK 93
+ +ALE P ++ +A C +LG Y A + A L ++ N+ A+ +G+C Y+E
Sbjct: 165 MDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYED 224
Query: 94 NYAAALETFTEGQKL 108
A++ F + ++
Sbjct: 225 CIEKAVQFFVQALRM 239
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 47.4 bits (111), Expect = 2e-05
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGIT 141
+E GFH VGQAGL+LL SSD P SQSAGIT
Sbjct: 37 VEMGFHHVGQAGLELLISSDLPTSASQSAGIT 68
>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
isoform b [Homo sapiens]
Length = 307
Score = 47.4 bits (111), Expect = 2e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 111 ETGFHRVGQAGLQLLTSSDPPALDSQSAGIT 141
ETGFH V QAGL+LL+SS+PPA SQSA IT
Sbjct: 93 ETGFHHVAQAGLKLLSSSNPPASTSQSAKIT 123
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 47.4 bits (111), Expect = 2e-05
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQN 159
+ET FH V QAGL+LLTS D P L SQSAGIT + SV +R Q+ +
Sbjct: 236 LETVFHHVSQAGLELLTSGDLPTLASQSAGITAS----SVISQRTQQTSS 281
>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Homo sapiens]
Length = 543
Score = 45.8 bits (107), Expect = 6e-05
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 26 DPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRK 85
D A++ T+A+++ P DA+ Y RA C+ L + +A+ D ++ ++L P RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434
Query: 86 GICEYHEKNYAAALETFTEGQKLD 109
K+Y A++ + + LD
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLD 458
Score = 32.0 bits (71), Expect = 0.90
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 30 ALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICE 89
AL+ ++A++ P + Y R+ + G+Y A D K+++L P+ RK
Sbjct: 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82
Query: 90 YHEKNYAAALETFTEGQK 107
+ A T+ EG K
Sbjct: 83 EFLNRFEEAKRTYEEGLK 100
>gi|221316570 cysteine and histidine-rich domain-containing protein
1 isoform b [Homo sapiens]
Length = 313
Score = 45.8 bits (107), Expect = 6e-05
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 173 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 232
++DW+QT +V I++ KN VE + L+ + ++++ ++L I ++
Sbjct: 212 RHDWHQTGGEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDVKR 271
Query: 233 STFKVLSTKIEIKLKKPEAVRWEKLE 258
S + +TKIEI ++K E ++W LE
Sbjct: 272 SYVTMTATKIEITMRKAEPMQWASLE 297
>gi|221316566 cysteine and histidine-rich domain-containing protein
1 isoform a [Homo sapiens]
Length = 332
Score = 45.8 bits (107), Expect = 6e-05
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 173 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 232
++DW+QT +V I++ KN VE + L+ + ++++ ++L I ++
Sbjct: 231 RHDWHQTGGEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDVKR 290
Query: 233 STFKVLSTKIEIKLKKPEAVRWEKLE 258
S + +TKIEI ++K E ++W LE
Sbjct: 291 SYVTMTATKIEITMRKAEPMQWASLE 316
>gi|61744477 solute carrier family 3, member 2 isoform b [Homo
sapiens]
Length = 631
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 103 TEGQKLDIETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
++ ++ +ETGFH V QA ++ LTS DP A S SAGITG
Sbjct: 62 SKNAEVTVETGFHHVSQADIEFLTSIDPTASASGSAGITG 101
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 109 DIETGFHRVGQAGLQLLTSSDPPALDSQSAGIT 141
D ETG V QAGLQLL SSDPPAL S++A +T
Sbjct: 36 DSETGSDCVTQAGLQLLASSDPPALASKNAEVT 68
>gi|61744479 solute carrier family 3, member 2 isoform d [Homo
sapiens]
Length = 599
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 109 DIETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
D ETG V QAGLQLL SSDPPAL S++A +TG
Sbjct: 36 DSETGSDCVTQAGLQLLASSDPPALASKNAEVTG 69
>gi|65506891 solute carrier family 3, member 2 isoform c [Homo
sapiens]
Length = 630
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
IETG V QAGLQLL SSDPPAL S++A +TG
Sbjct: 68 IETGSDCVTQAGLQLLASSDPPALASKNAEVTG 100
Score = 32.7 bits (73), Expect = 0.53
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 109 DIETGFHRVGQAGLQLLTSSDPPALDSQSAGI--TGAD 144
D E G H V Q GL+LL S DP SQ+A + TG+D
Sbjct: 36 DSELGSHCVAQTGLELLASGDPLPSASQNAEMIETGSD 73
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 44.3 bits (103), Expect = 2e-04
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 113 GFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
G + VGQAGL+LLTSSDPP SQ+A ITG
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITG 31
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 44.3 bits (103), Expect = 2e-04
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 113 GFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
G + VGQAGL+LLTSSDPP SQ+A ITG
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITG 31
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 44.3 bits (103), Expect = 2e-04
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 113 GFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
G + VGQAGL+LLTSSDPP SQ+A ITG
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITG 31
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/33 (69%), Positives = 25/33 (75%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
+ETGFH VGQA L+LLTS A SQSAGITG
Sbjct: 1041 VETGFHHVGQACLELLTSGGLLASASQSAGITG 1073
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 43.9 bits (102), Expect = 2e-04
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
+ET F V QAGL+LL S DPP SQSAGITG
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITG 386
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 43.9 bits (102), Expect = 2e-04
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
+ET F V QAGL+LL S DPP SQSAGITG
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITG 386
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 43.9 bits (102), Expect = 2e-04
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
+ET F V QAGL+LL S DPP SQSAGITG
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITG 386
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 43.9 bits (102), Expect = 2e-04
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
+ET F V QAGL+LL S DPP SQSAGITG
Sbjct: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITG 386
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 111 ETGFHRVGQAGLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESE------ 164
ETG V QAGL+ L S DP A S +AGITG+ ++ + + + E
Sbjct: 42 ETGSRYVAQAGLEPLASGDPSASASHAAGITGSRHRTRLFFPSSSGSASTPQEEQTKEGA 101
Query: 165 -------VWTHQSKIKYDWYQTESQVVITLM--IKNVQKNDVNVEFSEKELSALVKLPSG 215
+ T ++ DW Q+ +V++ L + +Q DV+ F++ + +V+ G
Sbjct: 102 CEDPHDLLATPTPELLLDWRQSAEEVIVKLRVGVGPLQLEDVDAAFTDTD--CVVRFAGG 159
Query: 216 EDY 218
+ +
Sbjct: 160 QQW 162
Score = 38.5 bits (88), Expect = 0.010
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 162 ESEVWTHQSKIKYDWYQT-ESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNL 220
E E + + +K D Y+ VV+ + +K + ++ V F E++ + + + G L
Sbjct: 275 EPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRL 334
Query: 221 ------------KLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258
+++L + I PEQ TF +++I+I L+K ++ RW LE
Sbjct: 335 HPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 384
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 43.5 bits (101), Expect = 3e-04
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGI 140
+ETGFH V AGL+LL S DPP SQS G+
Sbjct: 410 VETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,068,631
Number of Sequences: 37866
Number of extensions: 605516
Number of successful extensions: 1569
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 197
length of query: 365
length of database: 18,247,518
effective HSP length: 104
effective length of query: 261
effective length of database: 14,309,454
effective search space: 3734767494
effective search space used: 3734767494
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.