BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [Homo sapiens] (108 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|195546894 RAB, member RAS oncogene family-like 5 isoform c [H... 222 4e-59 gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [H... 222 4e-59 gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [H... 222 4e-59 gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Ho... 222 4e-59 gi|122056685 peptidylarginine deiminase type I [Homo sapiens] 32 0.11 gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.32 gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.32 gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.32 gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.32 gi|221316624 dystonin isoform 4 [Homo sapiens] 29 0.93 gi|221316622 dystonin isoform 3 [Homo sapiens] 29 0.93 gi|221316618 dystonin isoform 2 [Homo sapiens] 29 0.93 gi|34577047 dystonin isoform 1 [Homo sapiens] 29 0.93 gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 29 0.93 gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 29 0.93 gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 29 0.93 gi|239754732 PREDICTED: similar to hCG1737379 [Homo sapiens] 27 2.7 gi|239749279 PREDICTED: hypothetical protein XP_002346978 [Homo ... 27 2.7 gi|157738645 plexin A4 isoform 1 [Homo sapiens] 27 2.7 gi|197276647 leucine rich repeat (in FLII) interacting protein 2... 27 2.7 gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i... 27 2.7 gi|113722116 plexin A2 [Homo sapiens] 27 2.7 gi|5032223 plexin C1 [Homo sapiens] 27 2.7 gi|17978466 cyclin T1 [Homo sapiens] 27 3.5 gi|49355818 plexin A1 [Homo sapiens] 26 6.0 gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 26 6.0 gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 26 6.0 gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 26 6.0 gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 26 6.0 gi|117553586 dedicator of cytokinesis 5 [Homo sapiens] 26 6.0 >gi|195546894 RAB, member RAS oncogene family-like 5 isoform c [Homo sapiens] Length = 108 Score = 222 bits (566), Expect = 4e-59 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS Sbjct: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60 Query: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT Sbjct: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 >gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [Homo sapiens] Length = 108 Score = 222 bits (566), Expect = 4e-59 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS Sbjct: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60 Query: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT Sbjct: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 >gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [Homo sapiens] Length = 155 Score = 222 bits (566), Expect = 4e-59 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS Sbjct: 48 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 107 Query: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT Sbjct: 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 155 >gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Homo sapiens] Length = 185 Score = 222 bits (566), Expect = 4e-59 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS Sbjct: 78 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 137 Query: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT Sbjct: 138 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 185 >gi|122056685 peptidylarginine deiminase type I [Homo sapiens] Length = 663 Score = 32.0 bits (71), Expect = 0.11 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 3 DAHGVVIVFNADIPSHRK-EMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSP 61 + +G +++ N D +HR E ++ +S + LQD ML++ + P D L L+ Sbjct: 144 EGYGAILLVNCDRDNHRSAEPDLTHSWLMSLADLQDMSPMLLSCNGPDKLFDSHKLVLNV 203 Query: 62 PLNKLKLV 69 P + K V Sbjct: 204 PFSDSKRV 211 >gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens] Length = 103 Score = 30.4 bits (67), Expect = 0.32 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 53 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 + GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++ Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73 >gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens] Length = 103 Score = 30.4 bits (67), Expect = 0.32 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 53 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 + GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++ Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73 >gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens] Length = 103 Score = 30.4 bits (67), Expect = 0.32 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 53 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 + GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++ Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73 >gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens] Length = 103 Score = 30.4 bits (67), Expect = 0.32 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 53 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 + GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++ Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73 >gi|221316624 dystonin isoform 4 [Homo sapiens] Length = 5526 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 601 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 655 >gi|221316622 dystonin isoform 3 [Homo sapiens] Length = 5537 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 612 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 666 >gi|221316618 dystonin isoform 2 [Homo sapiens] Length = 5675 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 750 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 804 >gi|34577047 dystonin isoform 1 [Homo sapiens] Length = 5497 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 572 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 626 >gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] Length = 3062 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 246 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 300 >gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] Length = 5171 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 246 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 300 >gi|4502443 dystonin isoform 1e precursor [Homo sapiens] Length = 2649 Score = 28.9 bits (63), Expect = 0.93 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 47 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 +P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E Sbjct: 246 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 300 >gi|239754732 PREDICTED: similar to hCG1737379 [Homo sapiens] Length = 167 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 37 DTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNL 73 + QC L++ HKP D G+ S + P L + S L Sbjct: 117 ELQCFLLSVHKPHCFPDPGAFSRTSPSPPLTTIGSGL 153 >gi|239749279 PREDICTED: hypothetical protein XP_002346978 [Homo sapiens] Length = 167 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 37 DTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNL 73 + QC L++ HKP D G+ S + P L + S L Sbjct: 117 ELQCFLLSVHKPHCFPDPGAFSRTSPSPPLTTIGSGL 153 >gi|157738645 plexin A4 isoform 1 [Homo sapiens] Length = 1894 Score = 27.3 bits (59), Expect = 2.7 Identities = 11/36 (30%), Positives = 22/36 (61%) Query: 2 KDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQD 37 KD+ +++ DIPS++ +E +YS + P++ D Sbjct: 1791 KDSPSNKLLYAKDIPSYKNWVERYYSDIGKMPAISD 1826 >gi|197276647 leucine rich repeat (in FLII) interacting protein 2 isoform 3 [Homo sapiens] Length = 424 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 49 GSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 GSGD + L++L+ ++ +L+D +++ +++ LK + S+SE ++ + ++++ Sbjct: 95 GSGDTSSLIDPDTSLSELRDIY-DLKDQIQDVEGRYMQGLKELKESLSEVEEKYKKAMVS 153 >gi|5453726 leucine rich repeat (in FLII) interacting protein 2 isoform 1 [Homo sapiens] Length = 721 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 49 GSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108 GSGD + L++L+ ++ +L+D +++ +++ LK + S+SE ++ + ++++ Sbjct: 327 GSGDTSSLIDPDTSLSELRDIY-DLKDQIQDVEGRYMQGLKELKESLSEVEEKYKKAMVS 385 >gi|113722116 plexin A2 [Homo sapiens] Length = 1894 Score = 27.3 bits (59), Expect = 2.7 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Query: 2 KDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSP 61 KD+ +++ DIPS++ +E +Y+ + P++ D + A+ S ++ Sbjct: 1791 KDSPSNKLLYAKDIPSYKSWVERYYADIAKLPAISDQD--MNAYLAEQSRLHAVEFNMLS 1848 Query: 62 PLNKLKLVHSN--------LEDDPEEIRMEFIKYLKSIINSMS 96 LN++ S LE D + R ++ +IN+MS Sbjct: 1849 ALNEIYSYVSKYSEELIGALEQDEQARRQRLAYKVEQLINAMS 1891 >gi|5032223 plexin C1 [Homo sapiens] Length = 1568 Score = 27.3 bits (59), Expect = 2.7 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 20/104 (19%) Query: 2 KDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQC--MLIAHHKPGSGDDKGSLSL 59 K+A +++ DIP++++E++ +Y P L ++ L K + ++L Sbjct: 1462 KEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVAL 1521 Query: 60 SPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 103 + EI +KY I+N + R EE Sbjct: 1522 T------------------EIYKYIVKYFDEILNKLERERGLEE 1547 >gi|17978466 cyclin T1 [Homo sapiens] Length = 726 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 48 PGSGDDKGSLSLSPPLNKLKLVHSNLEDDP 77 PG D LS S P K ++ HS L+ P Sbjct: 614 PGHSSDTSGLSFSQPSCKTRVPHSKLDKGP 643 >gi|49355818 plexin A1 [Homo sapiens] Length = 1873 Score = 26.2 bits (56), Expect = 6.0 Identities = 9/36 (25%), Positives = 22/36 (61%) Query: 2 KDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQD 37 KD+ +++ DIP+++ +E +Y+ + P++ D Sbjct: 1770 KDSPSNKLLYAKDIPNYKSWVERYYADIAKMPAISD 1805 >gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo sapiens] Length = 1424 Score = 26.2 bits (56), Expect = 6.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 32 QPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPL 63 +P LQ TQ + A PG +G LS+S P+ Sbjct: 623 EPGLQGTQGVPGAPGPPGEAGPRGELSVSTPV 654 >gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo sapiens] Length = 1494 Score = 26.2 bits (56), Expect = 6.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 32 QPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPL 63 +P LQ TQ + A PG +G LS+S P+ Sbjct: 623 EPGLQGTQGVPGAPGPPGEAGPRGELSVSTPV 654 >gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo sapiens] Length = 1637 Score = 26.2 bits (56), Expect = 6.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 32 QPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPL 63 +P LQ TQ + A PG +G LS+S P+ Sbjct: 623 EPGLQGTQGVPGAPGPPGEAGPRGELSVSTPV 654 >gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo sapiens] Length = 1670 Score = 26.2 bits (56), Expect = 6.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 32 QPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPL 63 +P LQ TQ + A PG +G LS+S P+ Sbjct: 623 EPGLQGTQGVPGAPGPPGEAGPRGELSVSTPV 654 >gi|117553586 dedicator of cytokinesis 5 [Homo sapiens] Length = 1870 Score = 26.2 bits (56), Expect = 6.0 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 51 GDDKGSLSLSPPLNKLKLVHSNLEDDPEE----IRMEFIKYLKSIINSMSESRDREEMSI 106 G K + + +L L + L D P E I+ +KYL SIIN + D E+S+ Sbjct: 779 GQSKDGDEFNNSIRQLFLAFNMLMDRPLEEAVKIKGAALKYLPSIINDVKLVFDPVELSV 838 Query: 107 M 107 + Sbjct: 839 L 839 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,259,100 Number of Sequences: 37866 Number of extensions: 175840 Number of successful extensions: 494 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 473 Number of HSP's gapped (non-prelim): 34 length of query: 108 length of database: 18,247,518 effective HSP length: 78 effective length of query: 30 effective length of database: 15,293,970 effective search space: 458819100 effective search space used: 458819100 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.