Guide to the Human Genome
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Name: KIAA0556 Sequence: fasta or formatted (1618aa) NCBI GI: 194328738
Description:

hypothetical protein LOC23247

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         97           2
 C cysteine            1.2         20           1
 D aspartate           7.5        121           3
 E glutamate           7.7        125           2
 F phenylalanine       2.6         42           2
 G glycine             7.0        113           2
 H histidine           3.0         48           1
 I isoleucine          4.7         76           2
 K lysine              5.3         85           2
 L leucine             9.3        151           2
 M methionine          1.5         25           2
 N asparagine          3.6         58           2
 P proline             7.2        116           2
 Q glutamine           4.3         69           3
 R arginine            7.0        114           4
 S serine              8.3        134           3
 T threonine           5.4         88           3
 V valine              4.9         79           2
 W tryptophan          1.5         25           2
 Y tyrosine            2.0         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23247 
MAPT                  0.005   microtubule-associated protein tau isoform 2 
MAPT                  0.005   microtubule-associated protein tau isoform 5 
SRRM2                 0.005   splicing coactivator subunit SRm300 
NKTR                  0.005   natural killer-tumor recognition sequence 
WAC                   0.004   WW domain-containing adapter with a coiled-coil regi...
SFRS15                0.004   splicing factor, arginine/serine-rich 15 isoform 3 ...
PCLO                  0.004   piccolo isoform 2 
PCLO                  0.004   piccolo isoform 1 
SFRS15                0.004   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.004   splicing factor, arginine/serine-rich 15 isoform 1 [...
HIC1                  0.004   hypermethylated in cancer 1 isoform 2 
HIC1                  0.004   hypermethylated in cancer 1 isoform 1 
MDN1                  0.004   MDN1, midasin homolog 
ACIN1                 0.004   apoptotic chromatin condensation inducer 1 
WAC                   0.004   WW domain-containing adapter with a coiled-coil regi...
DPCR1                 0.004   diffuse panbronchiolitis critical region 1 protein ...
CTDP1                 0.004   CTD (carboxy-terminal domain, RNA polymerase II, pol...
PELP1                 0.004   proline, glutamic acid and leucine rich protein 1 [...
CREBBP                0.004   CREB binding protein isoform b 
CREBBP                0.004   CREB binding protein isoform a 
FAM21A                0.004   hypothetical protein LOC387680 
FAM21B                0.004   hypothetical protein LOC55747 
LOC100293596          0.004   PREDICTED: similar to mucin 
GON4L                 0.004   gon-4-like isoform a 
APC                   0.003   adenomatous polyposis coli 
APC                   0.003   adenomatous polyposis coli 
APC                   0.003   adenomatous polyposis coli 
FLJ22184              0.003   PREDICTED: hypothetical protein LOC80164 
LOC100294236          0.003   PREDICTED: similar to diffuse panbronchiolitis crit...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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