Search of human proteins with 113416994

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
         (302 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]           642   0.0  
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]           640   0.0  
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]           639   0.0  
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             55   8e-08
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     52   6e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    52   6e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         52   6e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        52   8e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    51   1e-06
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               51   1e-06
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              50   2e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    50   3e-06
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            49   7e-06
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    48   9e-06
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            48   9e-06
gi|150170670 piccolo isoform 2 [Homo sapiens]                          48   9e-06
gi|150378539 piccolo isoform 1 [Homo sapiens]                          48   9e-06
gi|33286446 opioid growth factor receptor [Homo sapiens]               47   2e-05
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          47   2e-05
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          47   2e-05
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          47   2e-05
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    47   3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    47   3e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        47   3e-05
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]       46   5e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    45   6e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    45   6e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    45   6e-05
gi|85815829 SH3-domain binding protein 1 [Homo sapiens]                45   6e-05

>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 302

 Score =  642 bits (1655), Expect = 0.0
 Identities = 302/302 (100%), Positives = 302/302 (100%)

Query: 1   MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
           MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1   MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60

Query: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
           HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120

Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
           RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180

Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240

Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
           PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300

Query: 301 VD 302
           VD
Sbjct: 301 VD 302


>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 302

 Score =  640 bits (1651), Expect = 0.0
 Identities = 301/302 (99%), Positives = 301/302 (99%)

Query: 1   MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
           MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1   MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60

Query: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
           HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120

Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
           RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180

Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240

Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
           PHTRPRPKCACS PGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300

Query: 301 VD 302
           VD
Sbjct: 301 VD 302


>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 302

 Score =  639 bits (1647), Expect = 0.0
 Identities = 300/302 (99%), Positives = 301/302 (99%)

Query: 1   MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
           MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1   MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60

Query: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
           HPEGFPDQPLIPATEPQSSTTFPGLS EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61  HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120

Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
           RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR+ARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180

Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240

Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
           PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300

Query: 301 VD 302
           VD
Sbjct: 301 VD 302


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 67/229 (29%), Positives = 90/229 (39%), Gaps = 44/229 (19%)

Query: 87  AEAPAPAGP---GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
           + +P+P+G    G+ +R G    SGQ    +  RP     P   P  P PR+R   A  A
Sbjct: 297 SRSPSPSGGSGWGSPQRNG---GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAA 353

Query: 144 ----SRAKE---PRGLPAQ-----RPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHAR 191
               +R KE   PR  P+      R   G G R R   RR RS+    +P   GR    R
Sbjct: 354 PTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGR----R 409

Query: 192 KPAALPVPGRFPIRPVL---------GGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPH 242
           +P   P P R   R +           GR  PG      +  G  G G+    RPP    
Sbjct: 410 RPR--PAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPP---- 463

Query: 243 TRPRPKCACSAPGTN-RNLGPRVAGAN-----HSASGVWAVSPRVTRAR 285
            R RP     +PG + R  GP    ++     H  S   + SP  +R+R
Sbjct: 464 -RARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 54/199 (27%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 66  PDQPLIPATEPQ-----SSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
           PD+P  P+   +     ++ T P    E+P+P    +++  G   A G    R   R   
Sbjct: 335 PDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRR 394

Query: 121 R------APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARS 174
           R      AP R   R PRP      +   SRA+      + R   GPG        R   
Sbjct: 395 RSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS--ERGHG 452

Query: 175 QHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRS-----GPGDRSLRSAHLGGAGQ 229
            H +R+ E   R   AR  +  P PG    R    G+S     GP  RS  S+      +
Sbjct: 453 GHGKRAKE---RPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSR 509

Query: 230 GRPWTARPPPIPHTRPRPK 248
            R    RP   P   P PK
Sbjct: 510 SRSAEKRPHS-PSRSPSPK 527



 Score = 38.1 bits (87), Expect = 0.010
 Identities = 60/228 (26%), Positives = 80/228 (35%), Gaps = 32/228 (14%)

Query: 78  SSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR-FPRPRMR 136
           SS +  G  A  P P  PG+ R  GH    G    R   RPP   P   +P      R  
Sbjct: 429 SSDSGSGRGAPGPGPE-PGSER--GH----GGHGKRAKERPPRARPASTSPSPGAHGRRG 481

Query: 137 FPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEP----------EGR 186
            P+   +SR+  P   P    +    ++SR      R   P RSP P          EGR
Sbjct: 482 GPEGKSSSRSPGPH--PRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGR 539

Query: 187 GNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR 246
             H+   A          R     RS    R  R          R  +AR  PIP+ RP 
Sbjct: 540 ARHSEAEAT---------RARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPS 590

Query: 247 P--KCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRS 292
           P    +C +   +     R     HS  G ++     TR+R    +R+
Sbjct: 591 PSSSSSCLSSDYSTRSHSRSPSPGHS-HGSYSSRSHGTRSRTRSPSRT 637



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 51/190 (26%), Positives = 66/190 (34%), Gaps = 13/190 (6%)

Query: 113 RNDHRPPG-RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRR 171
           R D    G R   RH  R  + + +     K     E  G  + R + G           
Sbjct: 210 RRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHY 269

Query: 172 ARSQHPER-SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
           + S+ P R SP+    G   RK  +    G     P  G   G   R+  S    GA  G
Sbjct: 270 SDSRSPSRLSPKHRDEG---RKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGG 326

Query: 231 RPWTARPPP----IPHTRPRPKCACSAPGT----NRNLGPRVAGANHSASGVWAVSPRVT 282
           RP +A  PP     P  R R K A +AP        +  PR A ++    G  A      
Sbjct: 327 RPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRR 386

Query: 283 RARRGCATRS 292
           R RR    RS
Sbjct: 387 RRRRRRRRRS 396


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 62/240 (25%), Positives = 82/240 (34%), Gaps = 37/240 (15%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
           + P   P+G P Q      +PQ     PG     P      P GP    +    P  G  
Sbjct: 112 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN 168

Query: 111 EARNDHRPPGRA---PPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
           ++R+   PPG+    PP+  + P+ P P    PQ        +P+G P      GP  + 
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228

Query: 166 RGPPRRARSQHPE-RSPEPEGRGNH------------------ARKPAALPVPGRFPIRP 206
               + ARS   + + P P+G GN                     KP   P PG+    P
Sbjct: 229 DNKSQSARSPPGKPQGPPPQG-GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287

Query: 207 VLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAG 266
             GG      RS      G   QG      PPP P     P       G N+  GP   G
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQGGNKPQGPPPPG 343



 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 57/206 (27%), Positives = 72/206 (34%), Gaps = 21/206 (10%)

Query: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
           +P+G P Q      +PQ   + PG   + P P G    +     P   Q         P 
Sbjct: 35  NPQGAPPQG---GNKPQGPPSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 90

Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
             PP   P+ P P     Q  K+   + P G P   P  G G + +GPP         + 
Sbjct: 91  GPPPPGKPQGPPP-----QGDKSRSPRSPPGKPQGPPPQG-GNQPQGPP---PPPGKPQG 141

Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           P P+G GN   KP   P PG+    P  G       RS      G   QG      PPP 
Sbjct: 142 PPPQG-GN---KPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPP 197

Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAG 266
           P     P       G N+  GP   G
Sbjct: 198 PGKPQGP----PPQGGNKPQGPPPPG 219



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 46/171 (26%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
           + P   P+G P Q      +PQ     PG     P      P GP    +    P  G  
Sbjct: 236 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 292

Query: 111 EARNDHRPPGRA---PPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
           ++R+   PPG+    PP+  + P+ P P    PQ        +P+G P      GP  + 
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 352

Query: 166 RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPG--RFPIRPVLGGRSGP 214
               R ARS   +    P+  GN+ + P   P  G  + P  P  G   GP
Sbjct: 353 GSKSRSARSPPGKPQGPPQQEGNNPQGPPP-PAGGNPQQPQAPPAGQPQGP 402



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 53/202 (26%), Positives = 68/202 (33%), Gaps = 17/202 (8%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P G P  P         S   P    + P P G    +     P   Q         P  
Sbjct: 217 PPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 276

Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSP 181
            PP   P+ P P+       K+  ++ P G P   P  G G + +GPP         + P
Sbjct: 277 PPPPGKPQGPPPQ----GGSKSRSSRSPPGKPQGPPPQG-GNQPQGPP---PPPGKPQGP 328

Query: 182 EPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ-GRPWTARPPPI 240
            P+G GN   KP   P PG+    P  GG      RS      G   Q G      PPP 
Sbjct: 329 PPQG-GN---KPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPA 384

Query: 241 PHTRPRPKCACSAPGTNRNLGP 262
                +P+    AP   +  GP
Sbjct: 385 GGNPQQPQ----APPAGQPQGP 402



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 28/137 (20%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
           + P   P+G P Q      +PQ     PG     P      P GP    +    P  G  
Sbjct: 298 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 354

Query: 111 EARNDHRPPGR--APPRHA---PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
           ++R+   PPG+   PP+     P+ P P               P G   Q+P   P  + 
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQGPPP---------------PAGGNPQQPQAPPAGQP 399

Query: 166 RGPPRRARSQHPERSPE 182
           +GPPR  +   P R P+
Sbjct: 400 QGPPRPPQGGRPSRPPQ 416



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 58  PHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHR 117
           P   P+G P Q     ++ +SS + PG   + P P G    +     P   Q        
Sbjct: 279 PPGKPQGPPPQG---GSKSRSSRSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 334

Query: 118 PPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRA--RSQ 175
            P   PP   P+ P P+       K+  A+ P G P Q P    G   +GPP  A    Q
Sbjct: 335 KPQGPPPPGKPQGPPPQ----GGSKSRSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQ 389

Query: 176 HPERSPEPEGRGNHARKPAALPVPGRFPIRP 206
            P+  P  + +G     P   P  GR P RP
Sbjct: 390 QPQAPPAGQPQG-----PPRPPQGGR-PSRP 414


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 54/158 (34%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 107 SGQVEARNDHRPPGRAPPRHAPRFP-RPRMRFPQAWKASRAKEPR-GLPAQRPTWGPGTR 164
           SG+ E R   RP G   P+  P  P +P  R PQ    S+   PR G P   P  G G +
Sbjct: 33  SGKPEGR---RPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQG-GNQ 88

Query: 165 SRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
           S+GPP   R   PE  P P+G GN ++ P   P PG+    P  GG    G         
Sbjct: 89  SQGPP--PRPGKPEGQP-PQG-GNQSQGPP--PRPGKPEGPPPQGGNQSQGPPPRPGKPE 142

Query: 225 GGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
           G   QG   +  PPP P     P       G N++ GP
Sbjct: 143 GPPPQGGNQSQGPPPRPGKPEGP----PPQGGNQSQGP 176



 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 61/204 (29%), Positives = 73/204 (35%), Gaps = 33/204 (16%)

Query: 58  PHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG--------PGTTRRAGHMPASGQ 109
           P   PEG P Q      + Q     PG   E P P G        P   +  G  P  G 
Sbjct: 53  PPGKPEGRPPQG---GNQSQGPPPRPG-KPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGN 108

Query: 110 VEARNDHRP--PGRAPPRHA-------PRFPRPRMRFPQAWKASRAKEPR-GLPAQRPTW 159
                  RP  P   PP+         PR  +P    PQ    S+   PR G P   P  
Sbjct: 109 QSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQ 168

Query: 160 GPGTRSRGPPRRARSQHPER--SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDR 217
           G G +S+GPP      HP +   P P+G GN ++ P   P PG+    P  GG    G  
Sbjct: 169 G-GNQSQGPP-----PHPGKPEGPPPQG-GNQSQGPP--PRPGKPEGPPPQGGNQSQGPP 219

Query: 218 SLRSAHLGGAGQGRPWTARPPPIP 241
                  G   QG      PPP P
Sbjct: 220 PRPGKPEGPPSQGGNKPQGPPPHP 243



 Score = 32.7 bits (73), Expect = 0.40
 Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 63  EGFPDQPLIP-ATEPQSSTTFPGLSAEAPAPAGP---GTTRRAGHMPASGQVEAR--NDH 116
           +G P +P  P    PQ      G       P GP   G  +  G  P  G+ +     + 
Sbjct: 195 QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEG 254

Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQH 176
             P R PP   P+ P P               P G P Q+P   P  + +GPP   +   
Sbjct: 255 NKPQRPPPPGRPQGPPP---------------PGGNP-QQPLPPPAGKPQGPPPPPQGGR 298

Query: 177 PERSPE 182
           P R P+
Sbjct: 299 PHRPPQ 304


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 61/222 (27%), Positives = 80/222 (36%), Gaps = 24/222 (10%)

Query: 66  PDQPLIPATEPQSSTTFP-GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPP 124
           P +   P+   +   T P G    +P+P  P T RR    PA      R    PP R  P
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRRRSPSP--PPTRRRRSPSPAPPPRRRRTPTPPPRRRTP 582

Query: 125 RHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPE 184
                 P PR R P   + S   + R  P+  P     +    P RRA       SP P+
Sbjct: 583 S-----PPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASP-----SPPPK 632

Query: 185 GRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTR 244
            R +H+  P     P        +  R  P   SL S H  G+   R       P P+ R
Sbjct: 633 RRVSHSPPPKQRSSP--------VTKRRSP---SLSSKHRKGSSPSRSTREARSPQPNKR 681

Query: 245 PRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARR 286
             P     AP T+ +  P   GA+ S     + SP     RR
Sbjct: 682 HSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 20/190 (10%)

Query: 72  PATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFP 131
           P+  P+  T  P    +  A   P   RR  H P   Q  +    R       +H     
Sbjct: 606 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKH----- 660

Query: 132 RPRMRFPQAWKASRAKEP--RGLPAQRPTWGPGTRSRGPP-RRARSQHPERSPEPEGRGN 188
           R      ++ + +R+ +P  R  P+ RP   P T S  PP RR  S  P+R   P     
Sbjct: 661 RKGSSPSRSTREARSPQPNKRHSPSPRPR-APQTSSSPPPVRRGASSSPQRRQSPSPSTR 719

Query: 189 HARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW-TARPPPIPHTRPRP 247
             R+ +  P P +      +   + P  +S+R      +  G P   A+ PP P   P P
Sbjct: 720 PIRRVSRTPEPKK------IKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAP---PSP 770

Query: 248 KCACSAPGTN 257
                +P TN
Sbjct: 771 -VQSQSPSTN 779



 Score = 35.4 bits (80), Expect = 0.062
 Identities = 45/153 (29%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 124 PRHAPRFPRPRMRFPQ--AWKASRAKEPRGLPAQRPTWGPGTRSRGP----PRR-----A 172
           P+  P  P P+   P+  + K    ++ R     R      TRSR P    PRR     +
Sbjct: 248 PKPEP-IPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRS 306

Query: 173 RSQHPERSPEPEGRGNHARK--PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
           RS  P R P P  R +  R+  P  +P P R         RS    R   SA L G+   
Sbjct: 307 RSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH-----RRSRSPVRRRRRSSASLSGSSSS 361

Query: 231 RPWT-ARPPPIPHTRPRPKCACSAPGTNRNLGP 262
              + +R PP    +  PK   S P   R L P
Sbjct: 362 SSSSRSRSPP----KKPPKRTSSPPRKTRRLSP 390



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 44/183 (24%), Positives = 62/183 (33%), Gaps = 37/183 (20%)

Query: 111 EARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR 170
           E+  + R   R+P R   R P PR R      +S  +  R            + SR P  
Sbjct: 160 ESSREKRERSRSPRRRKSRSPSPRRR------SSPVRRER----------KRSHSRSPRH 203

Query: 171 RARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
           R +S+ P  +PE +       K   LP P      P +   +   D              
Sbjct: 204 RTKSRSPSPAPEKK------EKTPELPEPSVKVKEPSVQEATSTSDILK----------- 246

Query: 231 RPWTARPPPIPHTR-PRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCA 289
                +P PIP  + P P+             PR    + S S   + SP  TR RR   
Sbjct: 247 ---VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHR 303

Query: 290 TRS 292
           +RS
Sbjct: 304 SRS 306



 Score = 33.1 bits (74), Expect = 0.31
 Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 28/112 (25%)

Query: 118 PPGRAPPRHAPRFPRPRM-RFP---------------QAWKASRAKEPRGLPAQRPTWGP 161
           P  R PPR  P  PR R  R P                +  +SR++ P   P +R +  P
Sbjct: 323 PRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPP 382

Query: 162 GTRSR-----GPPRRARSQHPERSPEPEGR-------GNHARKPAALPVPGR 201
               R      PPRR     P  +P P+ R        N  RK      PGR
Sbjct: 383 RKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 72/253 (28%), Positives = 97/253 (38%), Gaps = 26/253 (10%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPA-GPGTTRRAGHMPAS-----GQ 109
           + P   P+    +   P+ +P   +     S E+P PA  PG+ R     P S     G+
Sbjct: 407 KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGR 466

Query: 110 VEARNDH-----RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEP---RGLPAQRPTWGP 161
            +    H     R  GR+      +  R R R P     SR++ P   R   AQR  WG 
Sbjct: 467 AKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR--WG- 523

Query: 162 GTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIR-PVLGGRSGPGDRSLR 220
             RSR P RR RS+ P+R      R    R  +     GR   R P   GRS    RS  
Sbjct: 524 --RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRS----RSRT 577

Query: 221 SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSA-PGTNRNLGPRVAGANHSASGVWAVSP 279
            A  G +    P   R      TR R +    A  G +R+  P     + + S V   S 
Sbjct: 578 PARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTP-ARRRSRTRSPVRRRSR 636

Query: 280 RVTRARRGCATRS 292
             + ARR   +RS
Sbjct: 637 SRSPARRSGRSRS 649



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 67   DQPLIPATEPQSSTTFPGLSAEAP------APAGPGTTRRAGHMPASGQVEARNDHRPPG 120
            D+P         S + P   A AP      + +G  +  R      S   E+  +H P  
Sbjct: 1606 DKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKS 1665

Query: 121  RAPPRHAPRFPRP--RMRFPQAWKASRA------KEPRGLPAQRPTWGPGTRSRGPPRRA 172
            R   R +   P P  + R P   ++SR+      K      ++  +  P TRSR PPR  
Sbjct: 1666 RTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR 1725

Query: 173  RSQHPERSPEP--EGRGNHARKPAALP 197
            RS     SPEP  + R +  R+ A+ P
Sbjct: 1726 RSPSVS-SPEPAEKSRSSRRRRSASSP 1751



 Score = 36.6 bits (83), Expect = 0.028
 Identities = 52/182 (28%), Positives = 66/182 (36%), Gaps = 12/182 (6%)

Query: 83  PGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWK 142
           P     + +P  PG +R            AR      GR+  R      R R R P    
Sbjct: 528 PQRRGRSRSPQRPGWSRSRNTQRRGRSRSARR-----GRSHSRSPATRGRSRSRTPARRG 582

Query: 143 ASRAKEP-RGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
            SR++ P R     R      +RSR P RR RS    RS  P  R +  R P       R
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS----RSRTPARRRSRTRSPVRRRSRSR 638

Query: 202 FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLG 261
            P R     RS    R  RS     A +GR   +R P     R R +   +  G +R+  
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSRTPARRGRS-RSRTPARRSGRSRSRTP-ARRGRSRSRT 696

Query: 262 PR 263
           PR
Sbjct: 697 PR 698



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 51/209 (24%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 100  RAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFP-----QAWKASRAKEPRGLPA 154
            RA     SG   +     P  RA PR +      + R P      + ++S    P+   A
Sbjct: 1609 RAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTA 1668

Query: 155  QRPTWG---PGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALP-----VPGRFPIRP 206
            +R +     P T+SR PPRR  S+              +R  ++ P      P R    P
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSP 1728

Query: 207  VLGGRSGPGDRSLRSAHLGGAGQGRPWTA-----RPPPIPHTRPRPKCACSAPGTNRNLG 261
             +     P ++S  S     A   R  T       P P P    R +       T     
Sbjct: 1729 SVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRR 1787

Query: 262  PRVAGANHSASGVWAVS---PRVTRARRG 287
               +G++ S S     S    RVTR RRG
Sbjct: 1788 RDRSGSSQSTSRRRQRSRSRSRVTRRRRG 1816



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 16/202 (7%)

Query: 78  SSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRP---PGRAPPRHAPRFPRPR 134
           +S++    S    A A   TT  AG  P+           P   PG    +  P  P   
Sbjct: 269 ASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQR-PSSPETA 327

Query: 135 MRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPA 194
            + P +    + K+ +   A RP+  P   S GP      + P  +P    R   + +P 
Sbjct: 328 TKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGP------EPPAPTPLLAERHGGSPQPL 381

Query: 195 ALPVPGRFPIRP---VLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPH---TRPRPK 248
           A     + P+ P       R     +S        + +  P + +P  +     + P   
Sbjct: 382 ATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESP 441

Query: 249 CACSAPGTNRNLGPRVAGANHS 270
               APG++R +       N S
Sbjct: 442 KPAPAPGSHREISSSPTSKNRS 463



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 45/219 (20%), Positives = 74/219 (33%), Gaps = 20/219 (9%)

Query: 73   ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
            ++ P++ +  P     +P+ + P    +      S     R     P         R P 
Sbjct: 1711 SSSPETRSRTPPRHRRSPSVSSPEPAEK------SRSSRRRRSASSPRTKTTSRRGRSPS 1764

Query: 133  PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARK 192
            P+ R  Q  ++   +E      +R   G    +    +R+RS+         G G H+R 
Sbjct: 1765 PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRS 1824

Query: 193  PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACS 252
            PA      R   R   G    P     RS             +R  P P  R R + + +
Sbjct: 1825 PAR-QESSRTSSRRRRGRSRTPPTSRKRS------------RSRTSPAPWKRSRSRASPA 1871

Query: 253  APGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATR 291
                +R+  P ++    S S    VS R +R+R     R
Sbjct: 1872 THRRSRSRTPLIS-RRRSRSRTSPVSRRRSRSRTSVTRR 1909



 Score = 28.1 bits (61), Expect = 10.0
 Identities = 34/134 (25%), Positives = 42/134 (31%), Gaps = 17/134 (12%)

Query: 76   PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
            P S+      SA A AP     +R A  +  +    AR        AP         PR+
Sbjct: 2333 PASANLVGPRSAHATAPVNIAGSRTAAALAPASLTSAR-------MAPALSGANLTSPRV 2385

Query: 136  RFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQH--PERSPEPEGRGNHARKP 193
                  + S    P  L           RSR PP          ER+P P  R   A   
Sbjct: 2386 PLSAYERVSGRTSPPLLDR--------ARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQ 2437

Query: 194  AALPVPGRFPIRPV 207
            + LP     P  PV
Sbjct: 2438 SLLPPAQDQPRSPV 2451



 Score = 28.1 bits (61), Expect = 10.0
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 73   ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
            ++   SS++    S+ +P+PA PG   +A   PAS +        PPG    R +PR P 
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGP--QALPKPASPK------KPPPGERRSR-SPRKPI 2682

Query: 133  PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR 186
              +R  ++   S  +  R  P   P     + S    RR + +   RSP  + R
Sbjct: 2683 DSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQ-RGDSRSPSHKRR 2735


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
           sapiens]
          Length = 247

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 57/203 (28%), Positives = 73/203 (35%), Gaps = 29/203 (14%)

Query: 58  PHTHPEGFPDQ-------PLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQV 110
           P   P+G P Q       P  P  +P+      G  ++ P P  PG   R    P  G  
Sbjct: 53  PPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPH-PGKPERP---PPQGGN 108

Query: 111 EARNDHRPPG---RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
           +++    PPG   R PP+   +  RP    P   K  R     G  +Q P   PG     
Sbjct: 109 QSQGTPPPPGKPERPPPQGGNQSHRPP---PPPGKPERPPPQGGNQSQGPPPHPGKPEGP 165

Query: 168 PPRRARSQHPERSPEPEGRG---NHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
           PP+        RSP  + +G       KP   P PG+    P  G     G+     A  
Sbjct: 166 PPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAG-----GNPQQPQAPP 220

Query: 225 GGAGQGRPWTARPPPIPHTRPRP 247
            G  QG P    PPP     PRP
Sbjct: 221 AGKPQGPP----PPPQGGRPPRP 239



 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 62  PEGFPDQPLIPA-TEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
           P G P++P      + Q     PG   E P P     +R A   P   Q   + +   P 
Sbjct: 137 PPGKPERPPPQGGNQSQGPPPHPG-KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQ 195

Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHP 177
             PP   P+ P P    PQ  +A  A +P+G P       P  +   PPR A+ Q P
Sbjct: 196 GPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPP-------PPPQGGRPPRPAQGQQP 245



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 43/132 (32%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 132 RPRMRFPQAW-KASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHA 190
           +P  R PQ   +  R   P G P   P  G G +S+GPP       PE  P P+G GN +
Sbjct: 35  KPEGRRPQGGNQPQRPPPPPGKPQGPPPQG-GNQSQGPP--PPPGKPEGRP-PQG-GNQS 89

Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
           + P   P PG+    P  GG    G             QG   + RPPP P    RP   
Sbjct: 90  QGPP--PHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERP--- 144

Query: 251 CSAPGTNRNLGP 262
               G N++ GP
Sbjct: 145 -PPQGGNQSQGP 155



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 180 SPEPEGR----GNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTA 235
           S +PEGR    GN  ++P   P PG+    P  GG    G         G   QG   + 
Sbjct: 33  SGKPEGRRPQGGNQPQRPP--PPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQ 90

Query: 236 RPPPIPH--TRPRPKCACSAPGT 256
            PPP P    RP P+    + GT
Sbjct: 91  GPPPHPGKPERPPPQGGNQSQGT 113


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 59/200 (29%), Positives = 78/200 (39%), Gaps = 28/200 (14%)

Query: 88  EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRF-------PQA 140
           + PAP G       GH P     E R  H P G     H P+  R            PQ 
Sbjct: 794 QGPAPQG----MIMGHPPQ----EMRGPHPPGGLLG--HGPQEMRGPQEIRGMQGPPPQG 843

Query: 141 WKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHAR--KPAALPV 198
                 +E RG P  +   GP   S GPP +   Q P   P P+G+ N AR   P+  P+
Sbjct: 844 SMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGP---PGPQGQQNPARGPHPSQGPI 900

Query: 199 PGRFPIRPVLG-GRSGPGDRSLRSAH----LGGAGQGRPWTARPPPIPHTRPRPKCACSA 253
           P +    P+LG G   P ++  +S      + G GQ       PP  P   P P    S 
Sbjct: 901 PFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR 960

Query: 254 PGTNRNLGPRVAGANHSASG 273
              N ++GP ++   H  SG
Sbjct: 961 GPPNHHMGP-MSERRHEQSG 979



 Score = 32.3 bits (72), Expect = 0.53
 Identities = 46/152 (30%), Positives = 54/152 (35%), Gaps = 44/152 (28%)

Query: 117  RPPGRAPPRHAPRFP-----RPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRR 171
            R  GRAPPR    FP      P   F  + +A+R ++ RG            R RG PR 
Sbjct: 1111 RHEGRAPPRGRDGFPGPEDFGPEENFDASEEAARGRDLRG------------RGRGTPRG 1158

Query: 172  ARS---QHPERSPEPEGRGNHARKPAAL-----PVPGR-------FPIRPVLGGRSGPGD 216
             R      P+  P  EG     RKP +      P PG         P  P   G S P  
Sbjct: 1159 GRKGLLPTPDEFPRFEG----GRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHS-PAS 1213

Query: 217  RSLRSAHLGGAGQG------RPWTARPPPIPH 242
            R  RS+ L G          RPW   P    H
Sbjct: 1214 RE-RSSSLQGMDMASLPPRKRPWHDGPGTSEH 1244



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 24/137 (17%)

Query: 90   PAPAGPGTTRRAGHMPASGQVEARNDHRP----PGRAPPRHAPRFPRPRMRFPQAWKASR 145
            P P G     R  H P+ G +  +    P      RAP     +   P    P   +   
Sbjct: 881  PGPQGQQNPARGPH-PSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGA 939

Query: 146  AKEPRGLPAQRPTWGPGTR---SRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRF 202
                  +P   P  GPG     SRGPP        ER  E  G   H         P R 
Sbjct: 940  QGR---IPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHG--------PERG 988

Query: 203  PIRPVLGGRS--GPGDR 217
            P R   GG+   GP DR
Sbjct: 989  PFR---GGQDCRGPPDR 1002


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 18/208 (8%)

Query: 54  TFQEPHTHPEGFPDQPLIPATEPQSSTTFPG-----LSAEAPAPAGPGTTRRAGHMPASG 108
           T +EP   P   P  P  P  +  S   FP       S  +P PAGP  +      PA+ 
Sbjct: 759 TAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAAS 818

Query: 109 QVEARN-DHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
              A     +PPG   P  AP  P P    P        KEP G        GP     G
Sbjct: 819 SSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGC---SKGGGPPREDVG 875

Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG-- 225
            P    S          G    A  PA  P   + P+R  L GR+ P        H    
Sbjct: 876 APLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSGLHAAVR 935

Query: 226 ------GAGQGRPWTARPPPIPHTRPRP 247
                  A +G   +A+P   P   PRP
Sbjct: 936 LKACSLAASEGLS-SAQPNGPPEAEPRP 962



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 61/209 (29%), Positives = 75/209 (35%), Gaps = 38/209 (18%)

Query: 66  PDQPLIPA------TEPQS-STTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEAR----- 113
           P  P +PA      ++P+S +   P L+A A  P    TT  +   P + Q         
Sbjct: 661 PPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQES 720

Query: 114 ----NDHRPPGRAPPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGP 168
                D  PP   PP + P  P P  + P+   +A  A E    P Q P W P      P
Sbjct: 721 PVISKDQSPPPSPPPSYHP--PPPPTKKPEVVVEAPSASETAEEPLQDPNWPP-----PP 773

Query: 169 PRRARSQHPERS--PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGG 226
           P     Q    +  P PE     A    A P P      P L   S P   S  +  L  
Sbjct: 774 PPAPEEQDLSMADFPPPE----EAFFSVASPEPAGPSGSPEL--VSSPAASSSSATALQI 827

Query: 227 AGQGRPWTARPPPIPHTRPRPKCACSAPG 255
              G P    PPP P   P P  A SAPG
Sbjct: 828 QPPGSP---DPPPAP---PAPAPASSAPG 850



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 35/122 (28%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSL--RSAHLG 225
           PPRR  S H      P+G      KP     P + P  P  GG  G G        A+  
Sbjct: 500 PPRRTHSLHQRGLAVPDGPLGLPPKPERKQQP-QLPRPPTTGGSEGAGAAPCPPNPANSW 558

Query: 226 GAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPR-VAGANHSASGVWAVSP-RVTR 283
             G     + RPP  P     P    S+      L P+ +AG   S        P RVT 
Sbjct: 559 VPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTS 618

Query: 284 AR 285
            R
Sbjct: 619 LR 620


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 61/223 (27%), Positives = 81/223 (36%), Gaps = 29/223 (13%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPAS--GQVEA---RNDH 116
           P+G P  P  P   P      P        P GP         P S  G+ +    +  +
Sbjct: 47  PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN 106

Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS-RGPPRRARSQ 175
           +P G  PP   P+ P      PQ     +   P G P   P  G  +RS R PP + +  
Sbjct: 107 QPQGPPPPPGKPQGPP-----PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP 161

Query: 176 HPERSPEPEGRGNHARKPAALPVP-GRFPIRPVLGGR-SGP---GDRSLRSAHLGGAGQG 230
            P+   +P+G      KP   P   G+ P  P   G+  GP   GD+S  S    G  QG
Sbjct: 162 PPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG 221

Query: 231 -------RPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAG 266
                  +P    PPP     P P+      G N+  GP   G
Sbjct: 222 PPPQGGNQPQGPPPPPGKPQGPPPQ------GGNKPQGPPPPG 258



 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 61/225 (27%), Positives = 80/225 (35%), Gaps = 39/225 (17%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P+G P  P  P   P      P        P GP         P  G  ++R+   PPG+
Sbjct: 108 PQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGP---------PPQGD-KSRSPRSPPGK 157

Query: 122 ---APPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP---GTRSR------- 166
               PP+  + P+ P P    PQ       K+P+G P      GP   G +SR       
Sbjct: 158 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG 217

Query: 167 ---GPPRRARSQHPERSPEPEGR-----GNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
              GPP +  +Q P+  P P G+          KP   P PG+    P  GG      RS
Sbjct: 218 KPQGPPPQGGNQ-PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARS 276

Query: 219 LRSAHLGGAGQ-GRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
                 G   Q G      PPP      +P+    AP   +  GP
Sbjct: 277 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ----APPAGQPQGP 317



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 28/137 (20%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
           Q P   P+G P Q      +PQ     PG     P      P GP    +    PA G  
Sbjct: 213 QSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGS 269

Query: 111 EARNDHRPPGR--APPRHA---PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
           ++++   PPG+   PP+     P+ P P               P G   Q+P   P  + 
Sbjct: 270 KSQSARSPPGKPQGPPQQEGNNPQGPPP---------------PAGGNPQQPQAPPAGQP 314

Query: 166 RGPPRRARSQHPERSPE 182
           +GPPR  +   P R P+
Sbjct: 315 QGPPRPPQGGRPSRPPQ 331



 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 116 HRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS-RGPPRRARS 174
           ++P G  PP   P+ P P     Q     +   P G P   P  G  +RS R PP + + 
Sbjct: 45  NKPQGPPPPPGKPQGPPP-----QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG 99

Query: 175 QHPERSPEPEGRGNHARKPAALPVPG--RFPIRPVLGGRSGP---GDRSLRSAHLGGAGQ 229
             P+   +P+G      KP   P  G  R    P  G   GP   GD+S       G  Q
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 159

Query: 230 GRP-----WTARPPPIP 241
           G P         PPP P
Sbjct: 160 GPPPQGGNQPQGPPPPP 176



 Score = 37.4 bits (85), Expect = 0.016
 Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P G P  P     + +SS + PG   + P P G    +     P   Q         P  
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 253

Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRA--RSQHPER 179
            PP   P+ P  +       K+  A+ P G P Q P    G   +GPP  A    Q P+ 
Sbjct: 254 PPPPGKPQGPPAQ----GGSKSQSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQQPQA 308

Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRP 206
            P  + +G     P   P  GR P RP
Sbjct: 309 PPAGQPQG-----PPRPPQGGR-PSRP 329



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 149 PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVL 208
           P G P   P  G G + +GPP   + Q     P P+  G+ +R P + P   + P  P  
Sbjct: 53  PPGKPQGPPPQG-GNKPQGPPPPGKPQ----GPPPQ--GDKSRSPRSPPGKPQGP--PPQ 103

Query: 209 GGRS------GPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
           GG         PG         G   QG P   +P   P    + +   S PG  +  GP
Sbjct: 104 GGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPG--KPQGP 161

Query: 263 RVAGAN 268
              G N
Sbjct: 162 PPQGGN 167


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 57/183 (31%), Positives = 72/183 (39%), Gaps = 29/183 (15%)

Query: 72  PATEPQSSTTFPGLSAEAPAPAGP--GTTRRAGHMPASGQVEA----RNDHRPPGRAPPR 125
           PA  P+     P + A APA  G   G+  RA    A  Q  A    R   R PG +PP 
Sbjct: 74  PAAAPR---LLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPL 130

Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQ----HPERSP 181
             PR   P  R+P+A   +    P      R    PG RS   P R+R+      P   P
Sbjct: 131 Q-PRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDP 189

Query: 182 EPEG--RGNHARK-PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPP 238
            P     G+H R+ PA    P   P          PG R+ + A    AG+G     +PP
Sbjct: 190 RPRAPRPGDHPRRSPALRETPSLSP--------PSPGRRNGKRA----AGKGTTPQPQPP 237

Query: 239 PIP 241
           P P
Sbjct: 238 PPP 240



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 73/254 (28%), Positives = 88/254 (34%), Gaps = 36/254 (14%)

Query: 62  PEGFPDQPLIPATEPQ-SSTTFPG-LSAEAPAPAGPGTTRRAGHM-PASGQVEARNDHRP 118
           P G  + P  P    Q  S   P   SA + A A   +    G + P S +    +  R 
Sbjct: 13  PPGVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRA 72

Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP-GTRSR-----GPPRRA 172
              A PR  PR          A   SR +        +    P G R R      PP + 
Sbjct: 73  APAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQP 132

Query: 173 RSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGR----SGPGDRS----LRSAHL 224
           RS+HP           H R P A  VP   P+RP  G R    S PG RS     RS   
Sbjct: 133 RSRHP-----------HTRYPRA--VPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTP 179

Query: 225 GGAG--QGRPWTARPPPIPHTRPRPKC----ACSAPGTNRNLGPRVAGANHSASGVWAVS 278
           G AG  +G P    P P  H R  P      + S P   R  G R AG   +        
Sbjct: 180 GEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPP 239

Query: 279 PRVTRARRGCATRS 292
           P  TR     A R+
Sbjct: 240 PCATRREEDMALRT 253


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 60/206 (29%), Positives = 69/206 (33%), Gaps = 30/206 (14%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P+G   +   P   P     FPG +     P GP     AG  P    +       PPG 
Sbjct: 198 PQGGRGRGRFPGAVP-GGDRFPGPAG----PGGPPPPFPAGQTPPRPPLGPPGPPGPPGP 252

Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEP---RGLPAQRPTWGPGTRSRGPPRRARSQHPE 178
            PP      P P    P   +  R   P    G P  +P  GP     GPP       P 
Sbjct: 253 PPPGQV--LPPPLAGPPN--RGDRPPPPVLFPGQPFGQPPLGP--LPPGPPPPVPGYGPP 306

Query: 179 RSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPP 238
             P P  +G         P PG FP RP   G  GP        HL G     P    PP
Sbjct: 307 PGPPPPQQG-------PPPPPGPFPPRP--PGPLGPPLTLAPPPHLPG-----PPPGAPP 352

Query: 239 PIPHTRPR--PKCACSAPGTNRNLGP 262
           P PH  P   P    S   T+ + GP
Sbjct: 353 PAPHVNPAFFPPPTNSGMPTSDSRGP 378



 Score = 38.1 bits (87), Expect = 0.010
 Identities = 43/147 (29%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSR 166
           SGQ+       PPG +     P+  R R RFP A           +P      GP     
Sbjct: 177 SGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGA-----------VPGGDRFPGPAGPGG 225

Query: 167 GPPRRARSQHPERSP-EPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
            PP     Q P R P  P G       P   P PG+  + P L G    GDR        
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPG----PPGPPPPGQV-LPPPLAGPPNRGDRPPPPVLFP 280

Query: 226 GAGQGRP-----WTARPPPIPHTRPRP 247
           G   G+P         PPP+P   P P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPP 307



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 21/105 (20%)

Query: 162 GTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRS 221
           G    GPP  +      R+  P+G     R P A+P   RFP      G +GPG      
Sbjct: 182 GEGKAGPPGGS-----SRAAFPQGGRGRGRFPGAVPGGDRFP------GPAGPG------ 224

Query: 222 AHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAG 266
               G     P    PP  P   P P      P   + L P +AG
Sbjct: 225 ----GPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAG 265


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 68/207 (32%), Positives = 77/207 (37%), Gaps = 30/207 (14%)

Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFP-------QAW----KASRAKEPRGLPAQR 156
           G   AR  H PP  AP   A     P    P        AW    +ASRA   R  PA  
Sbjct: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103

Query: 157 PTWGPGTRSRGPPRRARSQHPER-SP---EPEGRGNHARKPAALPVPGRFPIRPVLGGRS 212
           P   PG       RR+ +    R SP   E  G    A       VP R  + P  GG S
Sbjct: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR-RLPPPCGGTS 162

Query: 213 -GPGDRSLR----SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGA 267
            G G R+LR    +A        R W A P P     PRP     APGT   +G  VA  
Sbjct: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAMPGP---GAPRP----GAPGT-WPVGFAVAAP 214

Query: 268 NHSASGVWAVSPRVTRARRGCATRSWV 294
             +A+ V    P V  A    A R WV
Sbjct: 215 PAAAASVAPPPPAVAGA-PAAAFRGWV 240


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 31/219 (14%)

Query: 57  EPHTHPEGF---PDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEAR 113
           +P   P G    P QPL PA  P   T     S+E P P         G  PA       
Sbjct: 350 KPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQ------ 403

Query: 114 NDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRAR 173
              +P    PP      P+P  + P     ++A  P   P Q+P  G     +  P +  
Sbjct: 404 ---QPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTS 460

Query: 174 SQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
           +Q    +  P      A+ P   P P + P  P   G + P  +             +P 
Sbjct: 461 AQQTGPTKPPSQLPGPAKPPPQQPGPAKPP--PQQPGSAKPPSQ-------------QPG 505

Query: 234 TARPPPIPHTRPRP-KCACSAPGTNRNLGPRVAGANHSA 271
           + +PPP    +P P K +   PG+ +    +   A  SA
Sbjct: 506 STKPPP---QQPGPAKPSPQQPGSTKPPSQQPGSAKPSA 541



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)

Query: 57  EPHTHPEGFPDQPLIPATEPQSSTTFPGLS---AEAPAP-------AGPGTTRRAGHMPA 106
           +P T   G P +PL      QS    PG +    + P P       AGPG T        
Sbjct: 409 KPPTQQVGTP-KPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKT-------- 459

Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLP--AQRPTWGPGTR 164
               +     +PP + P    P   +P    P   +   AK P   P   + P   PG  
Sbjct: 460 --SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517

Query: 165 SRGPPRRARSQHPERSP---EPEGRGNHARKPAA 195
              P +   ++ P + P   +P  +     KP+A
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 31/219 (14%)

Query: 57  EPHTHPEGF---PDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEAR 113
           +P   P G    P QPL PA  P   T     S+E P P         G  PA       
Sbjct: 350 KPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQ------ 403

Query: 114 NDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRAR 173
              +P    PP      P+P  + P     ++A  P   P Q+P  G     +  P +  
Sbjct: 404 ---QPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTS 460

Query: 174 SQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
           +Q    +  P      A+ P   P P + P  P   G + P  +             +P 
Sbjct: 461 AQQTGPTKPPSQLPGPAKPPPQQPGPAKPP--PQQPGSAKPPSQ-------------QPG 505

Query: 234 TARPPPIPHTRPRP-KCACSAPGTNRNLGPRVAGANHSA 271
           + +PPP    +P P K +   PG+ +    +   A  SA
Sbjct: 506 STKPPP---QQPGPAKPSPQQPGSTKPPSQQPGSAKPSA 541



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)

Query: 57  EPHTHPEGFPDQPLIPATEPQSSTTFPGLS---AEAPAP-------AGPGTTRRAGHMPA 106
           +P T   G P +PL      QS    PG +    + P P       AGPG T        
Sbjct: 409 KPPTQQVGTP-KPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKT-------- 459

Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLP--AQRPTWGPGTR 164
               +     +PP + P    P   +P    P   +   AK P   P   + P   PG  
Sbjct: 460 --SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517

Query: 165 SRGPPRRARSQHPERSP---EPEGRGNHARKPAA 195
              P +   ++ P + P   +P  +     KP+A
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 50/188 (26%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 61  HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHR--P 118
           H E   ++     T P+  T         P+PAGP     AG  PA    E        P
Sbjct: 495 HSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGP-----AGDEPAESPSETPGPRPAGP 549

Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKA----------SRAKEPRGLPAQRPTWGPGTRSRGP 168
            G  P       P PR   P   +           S A   R  PA+ P+  PG R  GP
Sbjct: 550 AGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGP 609

Query: 169 PRRARSQHPERSPEPEGRGNHARKPAALP--VPGRFPIRPVLGGRSGPGDRS-LRSAHL- 224
                ++ P  +P P   G    +PA  P   PG  P  P     +  G+ + L+ A + 
Sbjct: 610 AGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAELQDAEVE 669

Query: 225 GGAGQGRP 232
             A  G+P
Sbjct: 670 SSAKSGKP 677


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 58  PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSAEAPA-----PAGPGTTRRAGHMPAS 107
           PH  P   P  PL P T    +P + S   P L  + P       AGP         P  
Sbjct: 260 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 319

Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
              +A     P G +P   A  +P   ++ P +  A ++++P       P        + 
Sbjct: 320 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP 376

Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGA 227
           PP     Q P  +P+      H   P+   +    P  P L   S     SL + H    
Sbjct: 377 PPTTPIPQLP--APQAHKHPPHLSGPSPFSMNANLPPPPALKPLS-----SLSTHH---- 425

Query: 228 GQGRPWTARPPPI---PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPR 280
               P +A PPP+   P ++P P      PG  ++       A+H  +G+  V+P+
Sbjct: 426 ----PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 477



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 40/175 (22%), Positives = 55/175 (31%), Gaps = 37/175 (21%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG------PGTTRRAGHMPASGQ 109
           Q+  +  +    Q ++ A  P          A + AP G      PG T  A  +P  G 
Sbjct: 165 QDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGS 224

Query: 110 VEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
             A      P       AP  P P     QA                    P    + PP
Sbjct: 225 PTASQAPNQP------QAPTAPVPHTHIQQA--------------------PALHPQRPP 258

Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
                 HP   P  +     A +P+A   P     +P L G+  PG  SL++  L
Sbjct: 259 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 308



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 53/208 (25%), Positives = 75/208 (36%), Gaps = 54/208 (25%)

Query: 56  QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLSA-----EAPAPAGPGTTRRAGHMP---A 106
           Q P   P   P  PL +P  +P  +T  P L A       P  +GP       ++P   A
Sbjct: 357 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 414

Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPG-TRS 165
              + + + H PP   PP        P    PQ+         + LP+  P   PG T+S
Sbjct: 415 LKPLSSLSTHHPPSAHPP--------PLQLMPQS---------QPLPSS-PAQPPGLTQS 456

Query: 166 RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
           +  P       P  S  P G    A +P        F   P + G  GP   +  +    
Sbjct: 457 QNLPP------PPASHPPTGLHQVAPQPP-------FAQHPFVPG--GPPPITPPTC--- 498

Query: 226 GAGQGRPWTARPPPIPHTRPRPKCACSA 253
                 P T+ PP  P T  +P C+ +A
Sbjct: 499 ------PSTSTPPAGPGTSAQPPCSGAA 520


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 58   PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSAEAPA-----PAGPGTTRRAGHMPAS 107
            PH  P   P  PL P T    +P + S   P L  + P       AGP         P  
Sbjct: 814  PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 873

Query: 108  GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
               +A     P G +P   A  +P   ++ P +  A ++++P       P        + 
Sbjct: 874  LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP 930

Query: 168  PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGA 227
            PP     Q P  +P+      H   P+   +    P  P L   S     SL + H    
Sbjct: 931  PPTTPIPQLP--APQAHKHPPHLSGPSPFSMNANLPPPPALKPLS-----SLSTHH---- 979

Query: 228  GQGRPWTARPPPI---PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPR 280
                P +A PPP+   P ++P P      PG  ++       A+H  +G+  V+P+
Sbjct: 980  ----PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 1031



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 40/175 (22%), Positives = 55/175 (31%), Gaps = 37/175 (21%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG------PGTTRRAGHMPASGQ 109
           Q+  +  +    Q ++ A  P          A + AP G      PG T  A  +P  G 
Sbjct: 719 QDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGS 778

Query: 110 VEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
             A      P       AP  P P     QA                    P    + PP
Sbjct: 779 PTASQAPNQP------QAPTAPVPHTHIQQA--------------------PALHPQRPP 812

Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
                 HP   P  +     A +P+A   P     +P L G+  PG  SL++  L
Sbjct: 813 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 862



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 53/208 (25%), Positives = 75/208 (36%), Gaps = 54/208 (25%)

Query: 56   QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLSA-----EAPAPAGPGTTRRAGHMP---A 106
            Q P   P   P  PL +P  +P  +T  P L A       P  +GP       ++P   A
Sbjct: 911  QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968

Query: 107  SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPG-TRS 165
               + + + H PP   PP        P    PQ+         + LP+  P   PG T+S
Sbjct: 969  LKPLSSLSTHHPPSAHPP--------PLQLMPQS---------QPLPSS-PAQPPGLTQS 1010

Query: 166  RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
            +  P       P  S  P G    A +P        F   P + G  GP   +  +    
Sbjct: 1011 QNLPP------PPASHPPTGLHQVAPQPP-------FAQHPFVPG--GPPPITPPTC--- 1052

Query: 226  GAGQGRPWTARPPPIPHTRPRPKCACSA 253
                  P T+ PP  P T  +P C+ +A
Sbjct: 1053 ------PSTSTPPAGPGTSAQPPCSGAA 1074


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 58   PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSAEAPA-----PAGPGTTRRAGHMPAS 107
            PH  P   P  PL P T    +P + S   P L  + P       AGP         P  
Sbjct: 814  PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 873

Query: 108  GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
               +A     P G +P   A  +P   ++ P +  A ++++P       P        + 
Sbjct: 874  LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP 930

Query: 168  PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGA 227
            PP     Q P  +P+      H   P+   +    P  P L   S     SL + H    
Sbjct: 931  PPTTPIPQLP--APQAHKHPPHLSGPSPFSMNANLPPPPALKPLS-----SLSTHH---- 979

Query: 228  GQGRPWTARPPPI---PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPR 280
                P +A PPP+   P ++P P      PG  ++       A+H  +G+  V+P+
Sbjct: 980  ----PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 1031



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 40/175 (22%), Positives = 55/175 (31%), Gaps = 37/175 (21%)

Query: 56  QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG------PGTTRRAGHMPASGQ 109
           Q+  +  +    Q ++ A  P          A + AP G      PG T  A  +P  G 
Sbjct: 719 QDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGS 778

Query: 110 VEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
             A      P       AP  P P     QA                    P    + PP
Sbjct: 779 PTASQAPNQP------QAPTAPVPHTHIQQA--------------------PALHPQRPP 812

Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
                 HP   P  +     A +P+A   P     +P L G+  PG  SL++  L
Sbjct: 813 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 862



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 53/208 (25%), Positives = 75/208 (36%), Gaps = 54/208 (25%)

Query: 56   QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLSA-----EAPAPAGPGTTRRAGHMP---A 106
            Q P   P   P  PL +P  +P  +T  P L A       P  +GP       ++P   A
Sbjct: 911  QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968

Query: 107  SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPG-TRS 165
               + + + H PP   PP        P    PQ+         + LP+  P   PG T+S
Sbjct: 969  LKPLSSLSTHHPPSAHPP--------PLQLMPQS---------QPLPSS-PAQPPGLTQS 1010

Query: 166  RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
            +  P       P  S  P G    A +P        F   P + G  GP   +  +    
Sbjct: 1011 QNLPP------PPASHPPTGLHQVAPQPP-------FAQHPFVPG--GPPPITPPTC--- 1052

Query: 226  GAGQGRPWTARPPPIPHTRPRPKCACSA 253
                  P T+ PP  P T  +P C+ +A
Sbjct: 1053 ------PSTSTPPAGPGTSAQPPCSGAA 1074


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 64/258 (24%), Positives = 87/258 (33%), Gaps = 37/258 (14%)

Query: 60  THPEGFPDQPLIPATEPQSSTTFPGLS-------AEAPAPAGPG-----TTRRAGHMPAS 107
           TH    PD    P     S     G S       A AP+ A PG        + G +P  
Sbjct: 36  THSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGPGIPVAAAKPGVLPGG 95

Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQR----------- 156
           G         PP  +P R   R P P       W++ R   P G  A R           
Sbjct: 96  GGCTGARTENPP-LSPTRGDCRVPVPAAPISLRWRSGREARPGGPQAGRAGDPKADQAMH 154

Query: 157 --PTWGPGTRSRGPPRRARSQHPERS---PEPEGRGNHARKPAALPVPGRFPIRPVLGG- 210
             P W P  +   PP   R Q P  S   P     G  AR P       R  ++ + GG 
Sbjct: 155 LQPAWAPKLQ---PPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGG 211

Query: 211 --RSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR-PKCACSAPGTNRNLGPRVAGA 267
              S P   ++    L  +  GR    R   +  ++ R  +   +A     +LG ++   
Sbjct: 212 NRPSAPSRVAVEDPWLEVSSSGRGGPGRGQGLAGSQARGTRDPEAAQAMLHHLGAQLQAP 271

Query: 268 NHSASGVWAVSPRVTRAR 285
            +  +G W   PR T AR
Sbjct: 272 GNFQAG-WRAQPRRTGAR 288


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 73/252 (28%), Positives = 87/252 (34%), Gaps = 42/252 (16%)

Query: 64  GFPDQPLIPATE----------PQSSTTFPGLSAEA--------PAPAGP-------GTT 98
           GFP  P +P  +           +     PG+  E+        P P GP       G T
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 335

Query: 99  RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
             AG   A G         PPG   P   P FP       +A     A+ P G  AQ P 
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEG--AQGPR 392

Query: 159 WGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
             PGT     P  A S +P     P  +G+ A  P     PG FP     G R  PG + 
Sbjct: 393 GEPGTPGSPGPAGA-SGNPGTDGIPGAKGS-AGAPGIAGAPG-FP-----GPRGPPGPQG 444

Query: 219 LRSAHLGGAGQ-GRPWTA--RPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVW 275
             +  LG  GQ G P  A  +    P   P P     APG     G R  GA     GV 
Sbjct: 445 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR--GARGEPGGVG 501

Query: 276 AVSPRVTRARRG 287
            + P   R   G
Sbjct: 502 PIGPPGERGAPG 513



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 57/188 (30%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 73   ATEPQSSTTFPGLSAEAPAPAG---PGTTRRAGHMPASGQVEARNDHRPPGRA--PPRHA 127
            A  P  +T FPG +     P     PG     G     G   AR D  PPGRA  P    
Sbjct: 889  AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948

Query: 128  PRFPRPRMRFPQAWKASRAK---EPRGLPAQRPTWG-PGTR-SRG-PPRRARSQHPERSP 181
            P  P      P     S A+    P+GL  QR   G PG R  RG P     S  P +  
Sbjct: 949  PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 1008

Query: 182  EPEGRGNHARK----PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ----GRPW 233
             P   G+        P  L  P   P R    G  GP  R   +   G  G+    G P 
Sbjct: 1009 APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG 1068

Query: 234  TARPPPIP 241
               PP  P
Sbjct: 1069 APGPPGSP 1076



 Score = 37.0 bits (84), Expect = 0.021
 Identities = 61/221 (27%), Positives = 77/221 (34%), Gaps = 33/221 (14%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P+GF   P  P          PG+S        PG   + G    +G+     +  PPG 
Sbjct: 220 PQGFQGNPGEPGE--------PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271

Query: 122 APPRHAPRFP-RPRMRFPQAWKA-SRAKEPRGLPAQRPTWG-PGTRSRGPPRRARSQHPE 178
              R  P  P  P ++  + +     AK   G P  +   G PG      P   R    E
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 331

Query: 179 RS-PEPEG----RGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
           R    P G    RGN  +   A P PG  P+ P  GG   PG         G  G+  P 
Sbjct: 332 RGRTGPAGAAGARGNDGQPGPAGP-PG--PVGPA-GGPGFPGAP-------GAKGEAGPT 380

Query: 234 TARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGV 274
            AR P      PR       PGT  + GP  A  N    G+
Sbjct: 381 GARGPE-GAQGPR-----GEPGTPGSPGPAGASGNPGTDGI 415



 Score = 35.4 bits (80), Expect = 0.062
 Identities = 51/191 (26%), Positives = 61/191 (31%), Gaps = 13/191 (6%)

Query: 76  PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
           P  S    G   E      PG    AG   A GQ  A+ +    G+     AP  P+   
Sbjct: 811 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-PQGPS 869

Query: 136 RFPQAWKASRAKEPRGL-PAQRP---TWGPGTRSR-GPPRRARSQHPERSPEPEGRGNHA 190
             P     +    P+G   AQ P   T  PG   R GPP    +  P   P P G+    
Sbjct: 870 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 929

Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
                   PGR    P L G +GP          G  G   P  A  PP P      +  
Sbjct: 930 GARGDSGPPGRAG-EPGLQGPAGP------PGEKGEPGDDGPSGAEGPPGPQGLAGQRGI 982

Query: 251 CSAPGTNRNLG 261
              PG     G
Sbjct: 983 VGLPGQRGERG 993



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 58/213 (27%), Positives = 68/213 (31%), Gaps = 34/213 (15%)

Query: 76  PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQV----EARNDHR--PPGRAPPRHAP- 128
           P+ +   PG   E   P   G T R G     G+V        D R  PPG    R  P 
Sbjct: 541 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG 600

Query: 129 --RFPRPRMRFPQAWKASRAKEP-----RGLPAQRPTWGPGTRSRGPP-------RRARS 174
              FP P+    +  KA     P     RGLP +    G    + GPP        R   
Sbjct: 601 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG----AAGPPGPAGPAGERGEQ 656

Query: 175 QHPERS-----PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ 229
             P  S     P P G      KP    VPG      ++G R   G+R           Q
Sbjct: 657 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR---GERGFPGERGSPGAQ 713

Query: 230 GRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
           G       P  P T   PK A    G     GP
Sbjct: 714 GLQGPRGLPGTPGT-DGPKGASGPAGPPGAQGP 745



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 49/169 (28%), Positives = 63/169 (37%), Gaps = 17/169 (10%)

Query: 73   ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
            A  PQ  T   G      A   PG T   G     G   +  +  PPG  PP  + +   
Sbjct: 871  APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK-DG 927

Query: 133  PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARK 192
            P+     +    RA EP GL  Q P   PG   +G P        E  P P+G    A +
Sbjct: 928  PKGARGDSGPPGRAGEP-GL--QGPAGPPG--EKGEPGDDGPSGAEGPPGPQGL---AGQ 979

Query: 193  PAALPVPGRFPIR--PVLGGRSG-PGDRSLRSAHLGGAGQGRPWTARPP 238
               + +PG+   R  P L G SG PG +    A      +G P    PP
Sbjct: 980  RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA---SGDRGPPGPVGPP 1025


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 73/252 (28%), Positives = 87/252 (34%), Gaps = 42/252 (16%)

Query: 64  GFPDQPLIPATE----------PQSSTTFPGLSAEA--------PAPAGP-------GTT 98
           GFP  P +P  +           +     PG+  E+        P P GP       G T
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 266

Query: 99  RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
             AG   A G         PPG   P   P FP       +A     A+ P G  AQ P 
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEG--AQGPR 323

Query: 159 WGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
             PGT     P  A S +P     P  +G+ A  P     PG FP     G R  PG + 
Sbjct: 324 GEPGTPGSPGPAGA-SGNPGTDGIPGAKGS-AGAPGIAGAPG-FP-----GPRGPPGPQG 375

Query: 219 LRSAHLGGAGQ-GRPWTA--RPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVW 275
             +  LG  GQ G P  A  +    P   P P     APG     G R  GA     GV 
Sbjct: 376 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR--GARGEPGGVG 432

Query: 276 AVSPRVTRARRG 287
            + P   R   G
Sbjct: 433 PIGPPGERGAPG 444



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 57/188 (30%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 73   ATEPQSSTTFPGLSAEAPAPAG---PGTTRRAGHMPASGQVEARNDHRPPGRA--PPRHA 127
            A  P  +T FPG +     P     PG     G     G   AR D  PPGRA  P    
Sbjct: 820  AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879

Query: 128  PRFPRPRMRFPQAWKASRAK---EPRGLPAQRPTWG-PGTR-SRG-PPRRARSQHPERSP 181
            P  P      P     S A+    P+GL  QR   G PG R  RG P     S  P +  
Sbjct: 880  PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 939

Query: 182  EPEGRGNHARK----PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ----GRPW 233
             P   G+        P  L  P   P R    G  GP  R   +   G  G+    G P 
Sbjct: 940  APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG 999

Query: 234  TARPPPIP 241
               PP  P
Sbjct: 1000 APGPPGSP 1007



 Score = 37.0 bits (84), Expect = 0.021
 Identities = 61/221 (27%), Positives = 77/221 (34%), Gaps = 33/221 (14%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P+GF   P  P          PG+S        PG   + G    +G+     +  PPG 
Sbjct: 151 PQGFQGNPGEPGE--------PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202

Query: 122 APPRHAPRFP-RPRMRFPQAWKA-SRAKEPRGLPAQRPTWG-PGTRSRGPPRRARSQHPE 178
              R  P  P  P ++  + +     AK   G P  +   G PG      P   R    E
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 262

Query: 179 RS-PEPEG----RGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
           R    P G    RGN  +   A P PG  P+ P  GG   PG         G  G+  P 
Sbjct: 263 RGRTGPAGAAGARGNDGQPGPAGP-PG--PVGPA-GGPGFPGAP-------GAKGEAGPT 311

Query: 234 TARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGV 274
            AR P      PR       PGT  + GP  A  N    G+
Sbjct: 312 GARGPE-GAQGPR-----GEPGTPGSPGPAGASGNPGTDGI 346



 Score = 35.4 bits (80), Expect = 0.062
 Identities = 51/191 (26%), Positives = 61/191 (31%), Gaps = 13/191 (6%)

Query: 76  PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
           P  S    G   E      PG    AG   A GQ  A+ +    G+     AP  P+   
Sbjct: 742 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-PQGPS 800

Query: 136 RFPQAWKASRAKEPRGL-PAQRP---TWGPGTRSR-GPPRRARSQHPERSPEPEGRGNHA 190
             P     +    P+G   AQ P   T  PG   R GPP    +  P   P P G+    
Sbjct: 801 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 860

Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
                   PGR    P L G +GP          G  G   P  A  PP P      +  
Sbjct: 861 GARGDSGPPGRAG-EPGLQGPAGP------PGEKGEPGDDGPSGAEGPPGPQGLAGQRGI 913

Query: 251 CSAPGTNRNLG 261
              PG     G
Sbjct: 914 VGLPGQRGERG 924



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 58/213 (27%), Positives = 68/213 (31%), Gaps = 34/213 (15%)

Query: 76  PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQV----EARNDHR--PPGRAPPRHAP- 128
           P+ +   PG   E   P   G T R G     G+V        D R  PPG    R  P 
Sbjct: 472 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG 531

Query: 129 --RFPRPRMRFPQAWKASRAKEP-----RGLPAQRPTWGPGTRSRGPP-------RRARS 174
              FP P+    +  KA     P     RGLP +    G    + GPP        R   
Sbjct: 532 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG----AAGPPGPAGPAGERGEQ 587

Query: 175 QHPERS-----PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ 229
             P  S     P P G      KP    VPG      ++G R   G+R           Q
Sbjct: 588 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR---GERGFPGERGSPGAQ 644

Query: 230 GRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
           G       P  P T   PK A    G     GP
Sbjct: 645 GLQGPRGLPGTPGT-DGPKGASGPAGPPGAQGP 676



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 49/169 (28%), Positives = 63/169 (37%), Gaps = 17/169 (10%)

Query: 73  ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
           A  PQ  T   G      A   PG T   G     G   +  +  PPG  PP  + +   
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK-DG 858

Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARK 192
           P+     +    RA EP GL  Q P   PG   +G P        E  P P+G    A +
Sbjct: 859 PKGARGDSGPPGRAGEP-GL--QGPAGPPG--EKGEPGDDGPSGAEGPPGPQGL---AGQ 910

Query: 193 PAALPVPGRFPIR--PVLGGRSG-PGDRSLRSAHLGGAGQGRPWTARPP 238
              + +PG+   R  P L G SG PG +    A      +G P    PP
Sbjct: 911 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA---SGDRGPPGPVGPP 956


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 71  IPATEPQSSTTFPGLSAEAPAPAG-----PGTTRRAGHMPASGQVEARNDHRPPGRAPPR 125
           +P  +P+++     L A  P P G     P   R    +  +G+VE R    PP + PP 
Sbjct: 297 VPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 356

Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEG 185
           H       R   P   +     EPR L A+    GP    RGPP   R     R  +  G
Sbjct: 357 HHVPGHESRGPPPHELRGGPLPEPRPLMAE--PRGPMLDQRGPPLDGRGGRDPRGIDARG 414

Query: 186 RGNHARKPAALPVPG 200
               A +   L   G
Sbjct: 415 MEARAMEARGLDARG 429


>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
          Length = 669

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 62/218 (28%), Positives = 82/218 (37%), Gaps = 53/218 (24%)

Query: 65  FPDQPLIPATEPQSS------TTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRP 118
           F +    P  +PQSS      + FP  +++ P    P    +    P  G +  R    P
Sbjct: 246 FSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSDFP----KKPPQPELGDL-TRTSSEP 300

Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPR----GLP--AQRPTWGPGTRS------R 166
                P+      RPR   P  +KA   K P+    GLP  +  P +    R       R
Sbjct: 301 EVSVLPK------RPR---PAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPERR 351

Query: 167 GPPRRARSQHP----ERSPEPEGRGNHARKP--------AALPVP-----GRFPIRPVLG 209
           GPPR+     P    +R P+PE  G+  RKP        ++LP        R P+ P  G
Sbjct: 352 GPPRKFSQPEPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFG 411

Query: 210 GRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRP 247
               P  RS    H GGA  G     RP   P  RP P
Sbjct: 412 AAGTPRWRSGGLVHSGGARPG----LRPSHPPRRRPLP 445


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)

Query: 90   PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
            P P GP G T   G     G V    D  PPG   PR                K  R ++
Sbjct: 1162 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1210

Query: 149  PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
              G P Q  + GP T   GPP     + P  SP  EGR  G  A+  P A+  PG+  P+
Sbjct: 1211 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1267

Query: 205  RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
             P    G+ GP G R L     +    G  GQ G P    PP +P  R
Sbjct: 1268 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1315



 Score = 37.0 bits (84), Expect = 0.021
 Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 64  GFPDQPLIPATE-PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
           G P  P  P  + P+ S  FPG          PG +   G    SG+   R +  P G  
Sbjct: 710 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 758

Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPE 182
            PR   R PR       A   S    P G P +R   GP             Q P   P 
Sbjct: 759 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 803

Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           P+G       P    +PG    R  +G  G++GP          G AG+  P   R  P 
Sbjct: 804 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 860

Query: 241 PHTRPRPKCACSAPGT 256
           P   P P      PGT
Sbjct: 861 P---PGPPGEQGLPGT 873



 Score = 36.2 bits (82), Expect = 0.037
 Identities = 54/210 (25%), Positives = 66/210 (31%), Gaps = 29/210 (13%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P G P +  +P   PQ    FPG       P  PG     GH    G+V  +    PPG 
Sbjct: 783 PHGPPGERGLPG--PQGPNGFPGPKGP---PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 837

Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
                      P +  PQ A   +     RG P   P   PG   +G P  A  +  +  
Sbjct: 838 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 882

Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
           P P G             PG   +    GG         SGP   +      G AG G P
Sbjct: 883 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 942

Query: 233 WTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
                 P P   P        PG    +GP
Sbjct: 943 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 64  GFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARN---DHRPPG 120
           GF   P +P  +        G   +  A   PG     G     G++  R    +  P G
Sbjct: 473 GFDGLPGLPGEK--------GHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG 524

Query: 121 RAPPRHAPRFPRPR----MRFPQAWKASRAKEPR-GLPAQRPTWGPGTRSRGPPRRARSQ 175
              P+  P  P P     M  PQ  K S   +   G P Q+ T  PGT+    P+ A   
Sbjct: 525 LLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT--PGTQGLPGPQGAIGP 582

Query: 176 HPERSPE 182
           H E+ P+
Sbjct: 583 HGEKGPQ 589



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 54/205 (26%), Positives = 70/205 (34%), Gaps = 29/205 (14%)

Query: 76   PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR----FP 131
            PQ +    G   E   P  PG     G    +G+   + D  PPG AP +  P     FP
Sbjct: 843  PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG-APGKDGPAGLRGFP 901

Query: 132  RPR-MRFPQAWKASRAKE-------PRGLPAQRPTWGPGTRSRGPPRRARSQHP------ 177
              R +         +  E       P G P +R   G G    GPP R   Q P      
Sbjct: 902  GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG-GPIGPPGRPGPQGPPGAAGE 960

Query: 178  -----ERSP-EPEGRGNHARKPAALPVPGRFP-IRPVLGGRSGPGDRSLRSAHLGGAGQG 230
                 E+ P  P GR +  + P  LP P   P +    G +   GD   +    G  G+ 
Sbjct: 961  KGVPGEKGPIGPTGR-DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK-GNKGEH 1018

Query: 231  RPWTARPPPIPHTRPRPKCACSAPG 255
             P     P  P  +P    A   PG
Sbjct: 1019 GPPGPPGPIGPVGQPGAAGADGEPG 1043



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 84   GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
            G    A A   PG     GH  A G    R  + PPG   P      P P     +    
Sbjct: 1031 GQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PIGLQGLPGPSGEKGETGDV 1087

Query: 144  SRAKEPRGLPAQRPTWGPGTRS--RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
                 P G P  R   GP      +GPP    +  P   P  +G    +  P     PG 
Sbjct: 1088 G-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGEKGEPGESGSPGIQGEPG- 1142

Query: 202  FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLG 261
                 V G R   G++   S   G  G   P        P   P P      PG     G
Sbjct: 1143 -----VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1196

Query: 262  PR 263
            PR
Sbjct: 1197 PR 1198



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 49/214 (22%), Positives = 68/214 (31%), Gaps = 14/214 (6%)

Query: 69  PLIPATEPQSSTTFPGLSAEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
           P++ A E Q+             P GP G T R G +   G    + +    G   PR  
Sbjct: 379 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 438

Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRRARSQHPER 179
                P  +  +  +A  A   RG+P      G       PG    +G      +Q    
Sbjct: 439 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 497

Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
            P  +G      +     +PG    R +LG +  PG         G  G   P   +   
Sbjct: 498 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 553

Query: 240 IPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
            P   P P      PGT    GP+ A   H   G
Sbjct: 554 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 587



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 17/91 (18%)

Query: 157 PTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRF-----PIRPVLGGR 211
           P   PG   RGPP RA     + +P P G         +L +P RF        PV+  +
Sbjct: 335 PVGDPG--ERGPPGRAGLPGSDGAPGPPG--------TSLMLPFRFGSGGGDKGPVVAAQ 384

Query: 212 SGPGDRSLRSAHLGGAGQGRP--WTARPPPI 240
                  L+ A L   G   P  +T RP P+
Sbjct: 385 EAQAQAILQQARLALRGPPGPMGYTGRPGPL 415


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)

Query: 90   PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
            P P GP G T   G     G V    D  PPG   PR                K  R ++
Sbjct: 1141 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1189

Query: 149  PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
              G P Q  + GP T   GPP     + P  SP  EGR  G  A+  P A+  PG+  P+
Sbjct: 1190 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1246

Query: 205  RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
             P    G+ GP G R L     +    G  GQ G P    PP +P  R
Sbjct: 1247 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1294



 Score = 37.0 bits (84), Expect = 0.021
 Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 64  GFPDQPLIPATE-PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
           G P  P  P  + P+ S  FPG          PG +   G    SG+   R +  P G  
Sbjct: 689 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 737

Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPE 182
            PR   R PR       A   S    P G P +R   GP             Q P   P 
Sbjct: 738 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 782

Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           P+G       P    +PG    R  +G  G++GP          G AG+  P   R  P 
Sbjct: 783 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 839

Query: 241 PHTRPRPKCACSAPGT 256
           P   P P      PGT
Sbjct: 840 P---PGPPGEQGLPGT 852



 Score = 36.2 bits (82), Expect = 0.037
 Identities = 54/210 (25%), Positives = 66/210 (31%), Gaps = 29/210 (13%)

Query: 62  PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
           P G P +  +P   PQ    FPG       P  PG     GH    G+V  +    PPG 
Sbjct: 762 PHGPPGERGLPG--PQGPNGFPGPKGP---PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 816

Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
                      P +  PQ A   +     RG P   P   PG   +G P  A  +  +  
Sbjct: 817 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 861

Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
           P P G             PG   +    GG         SGP   +      G AG G P
Sbjct: 862 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 921

Query: 233 WTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
                 P P   P        PG    +GP
Sbjct: 922 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 108 GQVEARNDHRP--PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
           GQ E   + +P    R+P +   R  RP+ + PQ+  A   +  +G   +     PG   
Sbjct: 231 GQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLV 290

Query: 166 RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
            GPP           P  +G       P     PGR  + P   G  GP   SL      
Sbjct: 291 EGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRF 349

Query: 226 GAGQG 230
           G+G G
Sbjct: 350 GSGGG 354



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 64  GFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARN---DHRPPG 120
           GF   P +P  +        G   +  A   PG     G     G++  R    +  P G
Sbjct: 452 GFDGLPGLPGEK--------GHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG 503

Query: 121 RAPPRHAPRFPRPR----MRFPQAWKASRAKEPR-GLPAQRPTWGPGTRSRGPPRRARSQ 175
              P+  P  P P     M  PQ  K S   +   G P Q+ T  PGT+    P+ A   
Sbjct: 504 LLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT--PGTQGLPGPQGAIGP 561

Query: 176 HPERSPE 182
           H E+ P+
Sbjct: 562 HGEKGPQ 568



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 54/205 (26%), Positives = 70/205 (34%), Gaps = 29/205 (14%)

Query: 76   PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR----FP 131
            PQ +    G   E   P  PG     G    +G+   + D  PPG AP +  P     FP
Sbjct: 822  PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG-APGKDGPAGLRGFP 880

Query: 132  RPR-MRFPQAWKASRAKE-------PRGLPAQRPTWGPGTRSRGPPRRARSQHP------ 177
              R +         +  E       P G P +R   G G    GPP R   Q P      
Sbjct: 881  GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG-GPIGPPGRPGPQGPPGAAGE 939

Query: 178  -----ERSP-EPEGRGNHARKPAALPVPGRFP-IRPVLGGRSGPGDRSLRSAHLGGAGQG 230
                 E+ P  P GR +  + P  LP P   P +    G +   GD   +    G  G+ 
Sbjct: 940  KGVPGEKGPIGPTGR-DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK-GNKGEH 997

Query: 231  RPWTARPPPIPHTRPRPKCACSAPG 255
             P     P  P  +P    A   PG
Sbjct: 998  GPPGPPGPIGPVGQPGAAGADGEPG 1022



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 84   GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
            G    A A   PG     GH  A G    R  + PPG   P      P P     +    
Sbjct: 1010 GQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PIGLQGLPGPSGEKGETGDV 1066

Query: 144  SRAKEPRGLPAQRPTWGPGTRS--RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
                 P G P  R   GP      +GPP    +  P   P  +G    +  P     PG 
Sbjct: 1067 G-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGEKGEPGESGSPGIQGEPG- 1121

Query: 202  FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLG 261
                 V G R   G++   S   G  G   P        P   P P      PG     G
Sbjct: 1122 -----VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1175

Query: 262  PR 263
            PR
Sbjct: 1176 PR 1177



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 49/214 (22%), Positives = 68/214 (31%), Gaps = 14/214 (6%)

Query: 69  PLIPATEPQSSTTFPGLSAEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
           P++ A E Q+             P GP G T R G +   G    + +    G   PR  
Sbjct: 358 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 417

Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRRARSQHPER 179
                P  +  +  +A  A   RG+P      G       PG    +G      +Q    
Sbjct: 418 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 476

Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
            P  +G      +     +PG    R +LG +  PG         G  G   P   +   
Sbjct: 477 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 532

Query: 240 IPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
            P   P P      PGT    GP+ A   H   G
Sbjct: 533 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 566


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)

Query: 90   PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
            P P GP G T   G     G V    D  PPG   PR                K  R ++
Sbjct: 1248 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1296

Query: 149  PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
              G P Q  + GP T   GPP     + P  SP  EGR  G  A+  P A+  PG+  P+
Sbjct: 1297 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1353

Query: 205  RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
             P    G+ GP G R L     +    G  GQ G P    PP +P  R
Sbjct: 1354 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1401



 Score = 37.0 bits (84), Expect = 0.021
 Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 64  GFPDQPLIPATE-PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
           G P  P  P  + P+ S  FPG          PG +   G    SG+   R +  P G  
Sbjct: 796 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 844

Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPE 182
            PR   R PR       A   S    P G P +R   GP             Q P   P 
Sbjct: 845 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 889

Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
           P+G       P    +PG    R  +G  G++GP          G AG+  P   R  P 
Sbjct: 890 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 946

Query: 241 PHTRPRPKCACSAPGT 256
           P   P P      PGT
Sbjct: 947 P---PGPPGEQGLPGT 959



 Score = 36.2 bits (82), Expect = 0.037
 Identities = 54/210 (25%), Positives = 66/210 (31%), Gaps = 29/210 (13%)

Query: 62   PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
            P G P +  +P   PQ    FPG       P  PG     GH    G+V  +    PPG 
Sbjct: 869  PHGPPGERGLPG--PQGPNGFPGPKGP---PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 923

Query: 122  APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
                       P +  PQ A   +     RG P   P   PG   +G P  A  +  +  
Sbjct: 924  -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 968

Query: 181  PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
            P P G             PG   +    GG         SGP   +      G AG G P
Sbjct: 969  PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 1028

Query: 233  WTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
                  P P   P        PG    +GP
Sbjct: 1029 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 64  GFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARN---DHRPPG 120
           GF   P +P  +        G   +  A   PG     G     G++  R    +  P G
Sbjct: 559 GFDGLPGLPGEK--------GHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG 610

Query: 121 RAPPRHAPRFPRPR----MRFPQAWKASRAKEPR-GLPAQRPTWGPGTRSRGPPRRARSQ 175
              P+  P  P P     M  PQ  K S   +   G P Q+ T  PGT+    P+ A   
Sbjct: 611 LLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT--PGTQGLPGPQGAIGP 668

Query: 176 HPERSPE 182
           H E+ P+
Sbjct: 669 HGEKGPQ 675



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 54/205 (26%), Positives = 70/205 (34%), Gaps = 29/205 (14%)

Query: 76   PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR----FP 131
            PQ +    G   E   P  PG     G    +G+   + D  PPG AP +  P     FP
Sbjct: 929  PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG-APGKDGPAGLRGFP 987

Query: 132  RPR-MRFPQAWKASRAKE-------PRGLPAQRPTWGPGTRSRGPPRRARSQHP------ 177
              R +         +  E       P G P +R   G G    GPP R   Q P      
Sbjct: 988  GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG-GPIGPPGRPGPQGPPGAAGE 1046

Query: 178  -----ERSP-EPEGRGNHARKPAALPVPGRFP-IRPVLGGRSGPGDRSLRSAHLGGAGQG 230
                 E+ P  P GR +  + P  LP P   P +    G +   GD   +    G  G+ 
Sbjct: 1047 KGVPGEKGPIGPTGR-DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK-GNKGEH 1104

Query: 231  RPWTARPPPIPHTRPRPKCACSAPG 255
             P     P  P  +P    A   PG
Sbjct: 1105 GPPGPPGPIGPVGQPGAAGADGEPG 1129



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 84   GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
            G    A A   PG     GH  A G    R  + PPG   P      P P     +    
Sbjct: 1117 GQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PIGLQGLPGPSGEKGETGDV 1173

Query: 144  SRAKEPRGLPAQRPTWGPGTRS--RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
                 P G P  R   GP      +GPP    +  P   P  +G    +  P     PG 
Sbjct: 1174 G-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGEKGEPGESGSPGIQGEPG- 1228

Query: 202  FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLG 261
                 V G R   G++   S   G  G   P        P   P P      PG     G
Sbjct: 1229 -----VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1282

Query: 262  PR 263
            PR
Sbjct: 1283 PR 1284



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 49/214 (22%), Positives = 68/214 (31%), Gaps = 14/214 (6%)

Query: 69  PLIPATEPQSSTTFPGLSAEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
           P++ A E Q+             P GP G T R G +   G    + +    G   PR  
Sbjct: 465 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 524

Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRRARSQHPER 179
                P  +  +  +A  A   RG+P      G       PG    +G      +Q    
Sbjct: 525 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 583

Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
            P  +G      +     +PG    R +LG +  PG         G  G   P   +   
Sbjct: 584 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 639

Query: 240 IPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
            P   P P      PGT    GP+ A   H   G
Sbjct: 640 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 673



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 17/91 (18%)

Query: 157 PTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRF-----PIRPVLGGR 211
           P   PG   RGPP RA     + +P P G         +L +P RF        PV+  +
Sbjct: 421 PVGDPG--ERGPPGRAGLPGSDGAPGPPG--------TSLMLPFRFGSGGGDKGPVVAAQ 470

Query: 212 SGPGDRSLRSAHLGGAGQGRP--WTARPPPI 240
                  L+ A L   G   P  +T RP P+
Sbjct: 471 EAQAQAILQQARLALRGPPGPMGYTGRPGPL 501


>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
          Length = 701

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 33/210 (15%)

Query: 58  PHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-PAGPGTTRRAGHMPASGQVEARNDH 116
           P T P   P     PA    S+ T     +E P  PA P  TR      A  +  AR   
Sbjct: 507 PATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPETAAPVEDMARRTK 566

Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR------ 170
           RP   AP R  P  P P++        SR+  P       P   PG+ S G P+      
Sbjct: 567 RP---APAR--PTMPPPQV------SGSRSSPP------APPLPPGSGSPGTPQALPRRL 609

Query: 171 -----RARSQHPERSPEP--EGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAH 223
                RA +  P   P P    R    R PA+       P  P     S P    L +A 
Sbjct: 610 VGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSPVSLSNPAQVDLGAAT 669

Query: 224 L-GGAGQGRPWTARPPPIPHTRPRPKCACS 252
             GGA +       PP IP  +PRP+   S
Sbjct: 670 AEGGAPEAISGVPTPPAIP-PQPRPRSLAS 698


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,301,973
Number of Sequences: 37866
Number of extensions: 1239186
Number of successful extensions: 9890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 1262
Number of HSP's that attempted gapping in prelim test: 7083
Number of HSP's gapped (non-prelim): 3316
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.