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Search of human proteins with 113416470
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 642 0.0
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 640 0.0
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 637 0.0
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 55 8e-08
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 6e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 52 6e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 52 8e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 51 1e-06
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 51 1e-06
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 50 2e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 50 2e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 50 3e-06
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 49 7e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 48 9e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 48 9e-06
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 48 1e-05
gi|33286446 opioid growth factor receptor [Homo sapiens] 47 2e-05
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 47 2e-05
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 47 2e-05
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 47 2e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 47 3e-05
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 46 4e-05
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 46 5e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 45 6e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 45 6e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 45 6e-05
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 45 6e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 45 6e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 8e-05
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 642 bits (1656), Expect = 0.0
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
Query: 241 PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
Query: 301 VD 302
VD
Sbjct: 301 VD 302
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 640 bits (1651), Expect = 0.0
Identities = 301/302 (99%), Positives = 301/302 (99%)
Query: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
Query: 241 PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
PHTRPRPKCACS PGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
Query: 301 VD 302
VD
Sbjct: 301 VD 302
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 637 bits (1643), Expect = 0.0
Identities = 299/302 (99%), Positives = 300/302 (99%)
Query: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
HPEGFPDQPLIPATEPQSSTTFPGLS EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR+ARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
Query: 241 PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
PHTRPRPKCACS PGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
Query: 301 VD 302
VD
Sbjct: 301 VD 302
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 55.1 bits (131), Expect = 8e-08
Identities = 67/229 (29%), Positives = 90/229 (39%), Gaps = 44/229 (19%)
Query: 87 AEAPAPAGP---GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
+ +P+P+G G+ +R G SGQ + RP P P P PR+R A A
Sbjct: 297 SRSPSPSGGSGWGSPQRNG---GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAA 353
Query: 144 ----SRAKE---PRGLPAQ-----RPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHAR 191
+R KE PR P+ R G G R R RR RS+ +P GR R
Sbjct: 354 PTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGR----R 409
Query: 192 KPAALPVPGRFPIRPVL---------GGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPH 242
+P P P R R + GR PG + G G G+ RPP
Sbjct: 410 RPR--PAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPP---- 463
Query: 243 TRPRPKCACSTPGTN-RNLGPRVAGAN-----HSASGVWAVSPRVTRAR 285
R RP +PG + R GP ++ H S + SP +R+R
Sbjct: 464 -RARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511
Score = 45.1 bits (105), Expect = 8e-05
Identities = 54/199 (27%), Positives = 73/199 (36%), Gaps = 22/199 (11%)
Query: 66 PDQPLIPATEPQ-----SSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
PD+P P+ + ++ T P E+P+P +++ G A G R R
Sbjct: 335 PDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRR 394
Query: 121 R------APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARS 174
R AP R R PRP + SRA+ + R GPG R
Sbjct: 395 RSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS--ERGHG 452
Query: 175 QHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRS-----GPGDRSLRSAHLGGAGQ 229
H +R+ E R AR + P PG R G+S GP RS S+ +
Sbjct: 453 GHGKRAKE---RPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSR 509
Query: 230 GRPWTARPPPIPHTRPRPK 248
R RP P P PK
Sbjct: 510 SRSAEKRPHS-PSRSPSPK 527
Score = 38.1 bits (87), Expect = 0.010
Identities = 60/228 (26%), Positives = 80/228 (35%), Gaps = 32/228 (14%)
Query: 78 SSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR-FPRPRMR 136
SS + G A P P PG+ R GH G R RPP P +P R
Sbjct: 429 SSDSGSGRGAPGPGPE-PGSER--GH----GGHGKRAKERPPRARPASTSPSPGAHGRRG 481
Query: 137 FPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEP----------EGR 186
P+ +SR+ P P + ++SR R P RSP P EGR
Sbjct: 482 GPEGKSSSRSPGPH--PRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGR 539
Query: 187 GNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR 246
H+ A R RS R R R +AR PIP+ RP
Sbjct: 540 ARHSEAEAT---------RARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPS 590
Query: 247 P--KCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRS 292
P +C + + R HS G ++ TR+R +R+
Sbjct: 591 PSSSSSCLSSDYSTRSHSRSPSPGHS-HGSYSSRSHGTRSRTRSPSRT 637
Score = 32.3 bits (72), Expect = 0.53
Identities = 50/190 (26%), Positives = 65/190 (34%), Gaps = 13/190 (6%)
Query: 113 RNDHRPPG-RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRR 171
R D G R RH R + + + K E G + R + G
Sbjct: 210 RRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHY 269
Query: 172 ARSQHPER-SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ S+ P R SP+ G RK + G P G G R+ S GA G
Sbjct: 270 SDSRSPSRLSPKHRDEG---RKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGG 326
Query: 231 RPWTARPPP----IPHTRPRPKCACSTPGT----NRNLGPRVAGANHSASGVWAVSPRVT 282
RP +A PP P R R K A + P + PR A ++ G A
Sbjct: 327 RPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRR 386
Query: 283 RARRGCATRS 292
R RR RS
Sbjct: 387 RRRRRRRRRS 396
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.0 bits (123), Expect = 6e-07
Identities = 62/240 (25%), Positives = 82/240 (34%), Gaps = 37/240 (15%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
+ P P+G P Q +PQ PG P P GP + P G
Sbjct: 112 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN 168
Query: 111 EARNDHRPPGRA---PPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++R+ PPG+ PP+ + P+ P P PQ +P+G P GP +
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Query: 166 RGPPRRARSQHPE-RSPEPEGRGNH------------------ARKPAALPVPGRFPIRP 206
+ ARS + + P P+G GN KP P PG+ P
Sbjct: 229 DNKSQSARSPPGKPQGPPPQG-GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287
Query: 207 VLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGPRVAG 266
GG RS G QG PPP P P G N+ GP G
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQGGNKPQGPPPPG 343
Score = 49.3 bits (116), Expect = 4e-06
Identities = 57/206 (27%), Positives = 72/206 (34%), Gaps = 21/206 (10%)
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
+P+G P Q +PQ + PG + P P G + P Q P
Sbjct: 35 NPQGAPPQG---GNKPQGPPSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 90
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
PP P+ P P Q K+ + P G P P G G + +GPP +
Sbjct: 91 GPPPPGKPQGPPP-----QGDKSRSPRSPPGKPQGPPPQG-GNQPQGPP---PPPGKPQG 141
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P P+G GN KP P PG+ P G RS G QG PPP
Sbjct: 142 PPPQG-GN---KPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPP 197
Query: 241 PHTRPRPKCACSTPGTNRNLGPRVAG 266
P P G N+ GP G
Sbjct: 198 PGKPQGP----PPQGGNKPQGPPPPG 219
Score = 47.4 bits (111), Expect = 2e-05
Identities = 46/171 (26%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
+ P P+G P Q +PQ PG P P GP + P G
Sbjct: 236 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 292
Query: 111 EARNDHRPPGRA---PPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++R+ PPG+ PP+ + P+ P P PQ +P+G P GP +
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 352
Query: 166 RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPG--RFPIRPVLGGRSGP 214
R ARS + P+ GN+ + P P G + P P G GP
Sbjct: 353 GSKSRSARSPPGKPQGPPQQEGNNPQGPPP-PAGGNPQQPQAPPAGQPQGP 402
Score = 43.1 bits (100), Expect = 3e-04
Identities = 55/201 (27%), Positives = 68/201 (33%), Gaps = 27/201 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P P S P + P P G + P Q P
Sbjct: 217 PPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 276
Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSP 181
PP P+ P P+ K+ ++ P G P P G G + +GPP + P
Sbjct: 277 PPPPGKPQGPPPQ----GGSKSRSSRSPPGKPQGPPPQG-GNQPQGPP---PPPGKPQGP 328
Query: 182 EPEGRGNHARKPAALPVPGRFPIRPVLGG------RSGPGDRSLRSAHLGGAGQGRPWTA 235
P+G GN KP P PG+ P GG RS PG G QG P A
Sbjct: 329 PPQG-GN---KPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPA 384
Query: 236 -------RPPPI--PHTRPRP 247
+ PP P PRP
Sbjct: 385 GGNPQQPQAPPAGQPQGPPRP 405
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
+ P P+G P Q +PQ PG P P GP + P G
Sbjct: 298 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 354
Query: 111 EARNDHRPPGR--APPRHA---PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++R+ PPG+ PP+ P+ P P P G Q+P P +
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQGPPP---------------PAGGNPQQPQAPPAGQP 399
Query: 166 RGPPRRARSQHPERSPE 182
+GPPR + P R P+
Sbjct: 400 QGPPRPPQGGRPSRPPQ 416
Score = 38.5 bits (88), Expect = 0.007
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 58 PHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHR 117
P P+G P Q ++ +SS + PG + P P G + P Q
Sbjct: 279 PPGKPQGPPPQG---GSKSRSSRSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 334
Query: 118 PPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRA--RSQ 175
P PP P+ P P+ K+ A+ P G P Q P G +GPP A Q
Sbjct: 335 KPQGPPPPGKPQGPPPQ----GGSKSRSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQ 389
Query: 176 HPERSPEPEGRGNHARKPAALPVPGRFPIRP 206
P+ P + +G P P GR P RP
Sbjct: 390 QPQAPPAGQPQG-----PPRPPQGGR-PSRP 414
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 52.0 bits (123), Expect = 6e-07
Identities = 54/158 (34%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFP-RPRMRFPQAWKASRAKEPR-GLPAQRPTWGPGTR 164
SG+ E R RP G P+ P P +P R PQ S+ PR G P P G G +
Sbjct: 33 SGKPEGR---RPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQG-GNQ 88
Query: 165 SRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
S+GPP R PE P P+G GN ++ P P PG+ P GG G
Sbjct: 89 SQGPP--PRPGKPEGQP-PQG-GNQSQGPP--PRPGKPEGPPPQGGNQSQGPPPRPGKPE 142
Query: 225 GGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGP 262
G QG + PPP P P G N++ GP
Sbjct: 143 GPPPQGGNQSQGPPPRPGKPEGP----PPQGGNQSQGP 176
Score = 48.5 bits (114), Expect = 7e-06
Identities = 61/204 (29%), Positives = 73/204 (35%), Gaps = 33/204 (16%)
Query: 58 PHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG--------PGTTRRAGHMPASGQ 109
P PEG P Q + Q PG E P P G P + G P G
Sbjct: 53 PPGKPEGRPPQG---GNQSQGPPPRPG-KPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGN 108
Query: 110 VEARNDHRP--PGRAPPRHA-------PRFPRPRMRFPQAWKASRAKEPR-GLPAQRPTW 159
RP P PP+ PR +P PQ S+ PR G P P
Sbjct: 109 QSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQ 168
Query: 160 GPGTRSRGPPRRARSQHPER--SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDR 217
G G +S+GPP HP + P P+G GN ++ P P PG+ P GG G
Sbjct: 169 G-GNQSQGPP-----PHPGKPEGPPPQG-GNQSQGPP--PRPGKPEGPPPQGGNQSQGPP 219
Query: 218 SLRSAHLGGAGQGRPWTARPPPIP 241
G QG PPP P
Sbjct: 220 PRPGKPEGPPSQGGNKPQGPPPHP 243
Score = 32.7 bits (73), Expect = 0.40
Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 22/126 (17%)
Query: 63 EGFPDQPLIP-ATEPQSSTTFPGLSAEAPAPAGP---GTTRRAGHMPASGQVEAR--NDH 116
+G P +P P PQ G P GP G + G P G+ + +
Sbjct: 195 QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEG 254
Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQH 176
P R PP P+ P P P G P Q+P P + +GPP +
Sbjct: 255 NKPQRPPPPGRPQGPPP---------------PGGNP-QQPLPPPAGKPQGPPPPPQGGR 298
Query: 177 PERSPE 182
P R P+
Sbjct: 299 PHRPPQ 304
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 51.6 bits (122), Expect = 8e-07
Identities = 72/257 (28%), Positives = 94/257 (36%), Gaps = 44/257 (17%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPA-GPGTTRRAGHMPAS-----GQ 109
+ P P+ + P+ +P + S E+P PA PG+ R P S G+
Sbjct: 407 KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGR 466
Query: 110 VEARNDH-----RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEP---RGLPAQRPTWGP 161
+ H R GR+ + R R R P SR++ P R AQR WG
Sbjct: 467 AKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR--WG- 523
Query: 162 GTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIR-PVLGGRSGPGDRSLR 220
RSR P RR RS+ P+R R R + GR R P GRS RS
Sbjct: 524 --RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRS----RSRT 577
Query: 221 SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPR 280
A G + P R R + T +R+ P G + S
Sbjct: 578 PARRGRSRSRTP----------ARRRSRSRTPTRRRSRSRTPARRGRSRSR--------- 618
Query: 281 VTRARRGCATRSWVFHR 297
T ARR TRS V R
Sbjct: 619 -TPARRRSRTRSPVRRR 634
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 17/147 (11%)
Query: 67 DQPLIPATEPQSSTTFPGLSAEAP------APAGPGTTRRAGHMPASGQVEARNDHRPPG 120
D+P S + P A AP + +G + R S E+ +H P
Sbjct: 1606 DKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKS 1665
Query: 121 RAPPRHAPRFPRP--RMRFPQAWKASRA------KEPRGLPAQRPTWGPGTRSRGPPRRA 172
R R + P P + R P ++SR+ K ++ + P TRSR PPR
Sbjct: 1666 RTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR 1725
Query: 173 RSQHPERSPEP--EGRGNHARKPAALP 197
RS SPEP + R + R+ A+ P
Sbjct: 1726 RSPSVS-SPEPAEKSRSSRRRRSASSP 1751
Score = 36.6 bits (83), Expect = 0.028
Identities = 52/182 (28%), Positives = 66/182 (36%), Gaps = 12/182 (6%)
Query: 83 PGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWK 142
P + +P PG +R AR GR+ R R R R P
Sbjct: 528 PQRRGRSRSPQRPGWSRSRNTQRRGRSRSARR-----GRSHSRSPATRGRSRSRTPARRG 582
Query: 143 ASRAKEP-RGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
SR++ P R R +RSR P RR RS RS P R + R P R
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS----RSRTPARRRSRTRSPVRRRSRSR 638
Query: 202 FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLG 261
P R RS R RS A +GR +R P R R + + G +R+
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSRTPARRGRS-RSRTPARRSGRSRSRTP-ARRGRSRSRT 696
Query: 262 PR 263
PR
Sbjct: 697 PR 698
Score = 31.2 bits (69), Expect = 1.2
Identities = 51/209 (24%), Positives = 72/209 (34%), Gaps = 22/209 (10%)
Query: 100 RAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFP-----QAWKASRAKEPRGLPA 154
RA SG + P RA PR + + R P + ++S P+ A
Sbjct: 1609 RAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTA 1668
Query: 155 QRPTWG---PGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALP-----VPGRFPIRP 206
+R + P T+SR PPRR S+ +R ++ P P R P
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSP 1728
Query: 207 VLGGRSGPGDRSLRSAHLGGAGQGRPWTA-----RPPPIPHTRPRPKCACSTPGTNRNLG 261
+ P ++S S A R T P P P R + T
Sbjct: 1729 SVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRR 1787
Query: 262 PRVAGANHSASGVWAVS---PRVTRARRG 287
+G++ S S S RVTR RRG
Sbjct: 1788 RDRSGSSQSTSRRRQRSRSRSRVTRRRRG 1816
Score = 30.4 bits (67), Expect = 2.0
Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 20/219 (9%)
Query: 73 ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
++ P++ + P +P+ + P + S R P R P
Sbjct: 1711 SSSPETRSRTPPRHRRSPSVSSPEPAEK------SRSSRRRRSASSPRTKTTSRRGRSPS 1764
Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARK 192
P+ R Q ++ +E +R G + +R+RS+ G G H+R
Sbjct: 1765 PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRS 1824
Query: 193 PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACS 252
PA R R G P RS +R P P R R + + +
Sbjct: 1825 PAR-QESSRTSSRRRRGRSRTPPTSRKRS------------RSRTSPAPWKRSRSRASPA 1871
Query: 253 TPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATR 291
T +R+ P ++ S S VS R +R+R R
Sbjct: 1872 THRRSRSRTPLIS-RRRSRSRTSPVSRRRSRSRTSVTRR 1909
Score = 28.9 bits (63), Expect = 5.8
Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 17/226 (7%)
Query: 78 SSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRP---PGRAPPRHAPRFPRPR 134
+S++ S A A TT AG P+ P PG + P P
Sbjct: 269 ASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQR-PSSPETA 327
Query: 135 MRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGP----PRRARSQHPERSPEPEGRGNHA 190
+ P + + K+ + A RP+ P S GP P ++ SP+P +
Sbjct: 328 TKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLS 387
Query: 191 RKPAALP---------VPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIP 241
++P P P + P + S S + + P + +P P P
Sbjct: 388 QEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAP 447
Query: 242 HTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRG 287
+ + ++ + R +H+ S S A+RG
Sbjct: 448 GSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRG 493
Score = 28.1 bits (61), Expect = 10.0
Identities = 34/134 (25%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 76 PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
P S+ SA A AP +R A + + AR AP PR+
Sbjct: 2333 PASANLVGPRSAHATAPVNIAGSRTAAALAPASLTSAR-------MAPALSGANLTSPRV 2385
Query: 136 RFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQH--PERSPEPEGRGNHARKP 193
+ S P L RSR PP ER+P P R A
Sbjct: 2386 PLSAYERVSGRTSPPLLDR--------ARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQ 2437
Query: 194 AALPVPGRFPIRPV 207
+ LP P PV
Sbjct: 2438 SLLPPAQDQPRSPV 2451
Score = 28.1 bits (61), Expect = 10.0
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 73 ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
++ SS++ S+ +P+PA PG +A PAS + PPG R +PR P
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGP--QALPKPASPK------KPPPGERRSR-SPRKPI 2682
Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR 186
+R ++ S + R P P + S RR + + RSP + R
Sbjct: 2683 DSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQ-RGDSRSPSHKRR 2735
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 50.8 bits (120), Expect = 1e-06
Identities = 57/203 (28%), Positives = 73/203 (35%), Gaps = 29/203 (14%)
Query: 58 PHTHPEGFPDQ-------PLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQV 110
P P+G P Q P P +P+ G ++ P P PG R P G
Sbjct: 53 PPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPH-PGKPERP---PPQGGN 108
Query: 111 EARNDHRPPG---RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+++ PPG R PP+ + RP P K R G +Q P PG
Sbjct: 109 QSQGTPPPPGKPERPPPQGGNQSHRPP---PPPGKPERPPPQGGNQSQGPPPHPGKPEGP 165
Query: 168 PPRRARSQHPERSPEPEGRG---NHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
PP+ RSP + +G KP P PG+ P G G+ A
Sbjct: 166 PPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAG-----GNPQQPQAPP 220
Query: 225 GGAGQGRPWTARPPPIPHTRPRP 247
G QG P PPP PRP
Sbjct: 221 AGKPQGPP----PPPQGGRPPRP 239
Score = 41.6 bits (96), Expect = 9e-04
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 62 PEGFPDQPLIPA-TEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
P G P++P + Q PG E P P +R A P Q + + P
Sbjct: 137 PPGKPERPPPQGGNQSQGPPPHPG-KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQ 195
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHP 177
PP P+ P P PQ +A A +P+G P P + PPR A+ Q P
Sbjct: 196 GPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPP-------PPPQGGRPPRPAQGQQP 245
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/132 (32%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 132 RPRMRFPQAW-KASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHA 190
+P R PQ + R P G P P G G +S+GPP PE P P+G GN +
Sbjct: 35 KPEGRRPQGGNQPQRPPPPPGKPQGPPPQG-GNQSQGPP--PPPGKPEGRP-PQG-GNQS 89
Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
+ P P PG+ P GG G QG + RPPP P RP
Sbjct: 90 QGPP--PHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERP--- 144
Query: 251 CSTPGTNRNLGP 262
G N++ GP
Sbjct: 145 -PPQGGNQSQGP 155
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 180 SPEPEGR----GNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTA 235
S +PEGR GN ++P P PG+ P GG G G QG +
Sbjct: 33 SGKPEGRRPQGGNQPQRPP--PPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQ 90
Query: 236 RPPPIPH--TRPRPKCACSTPGT 256
PPP P RP P+ + GT
Sbjct: 91 GPPPHPGKPERPPPQGGNQSQGT 113
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 50.8 bits (120), Expect = 1e-06
Identities = 59/200 (29%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 88 EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRF-------PQA 140
+ PAP G GH P E R H P G H P+ R PQ
Sbjct: 794 QGPAPQG----MIMGHPPQ----EMRGPHPPGGLLG--HGPQEMRGPQEIRGMQGPPPQG 843
Query: 141 WKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHAR--KPAALPV 198
+E RG P + GP S GPP + Q P P P+G+ N AR P+ P+
Sbjct: 844 SMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGP---PGPQGQQNPARGPHPSQGPI 900
Query: 199 PGRFPIRPVLG-GRSGPGDRSLRSAH----LGGAGQGRPWTARPPPIPHTRPRPKCACST 253
P + P+LG G P ++ +S + G GQ PP P P P S
Sbjct: 901 PFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR 960
Query: 254 PGTNRNLGPRVAGANHSASG 273
N ++GP ++ H SG
Sbjct: 961 GPPNHHMGP-MSERRHEQSG 979
Score = 32.3 bits (72), Expect = 0.53
Identities = 46/152 (30%), Positives = 54/152 (35%), Gaps = 44/152 (28%)
Query: 117 RPPGRAPPRHAPRFP-----RPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRR 171
R GRAPPR FP P F + +A+R ++ RG R RG PR
Sbjct: 1111 RHEGRAPPRGRDGFPGPEDFGPEENFDASEEAARGRDLRG------------RGRGTPRG 1158
Query: 172 ARS---QHPERSPEPEGRGNHARKPAAL-----PVPGR-------FPIRPVLGGRSGPGD 216
R P+ P EG RKP + P PG P P G S P
Sbjct: 1159 GRKGLLPTPDEFPRFEG----GRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHS-PAS 1213
Query: 217 RSLRSAHLGGAGQG------RPWTARPPPIPH 242
R RS+ L G RPW P H
Sbjct: 1214 RE-RSSSLQGMDMASLPPRKRPWHDGPGTSEH 1244
Score = 30.4 bits (67), Expect = 2.0
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 24/137 (17%)
Query: 90 PAPAGPGTTRRAGHMPASGQVEARNDHRP----PGRAPPRHAPRFPRPRMRFPQAWKASR 145
P P G R H P+ G + + P RAP + P P +
Sbjct: 881 PGPQGQQNPARGPH-PSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGA 939
Query: 146 AKEPRGLPAQRPTWGPGTR---SRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRF 202
+P P GPG SRGPP ER E G H P R
Sbjct: 940 QGR---IPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHG--------PERG 988
Query: 203 PIRPVLGGRS--GPGDR 217
P R GG+ GP DR
Sbjct: 989 PFR---GGQDCRGPPDR 1002
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 18/208 (8%)
Query: 54 TFQEPHTHPEGFPDQPLIPATEPQSSTTFPG-----LSAEAPAPAGPGTTRRAGHMPASG 108
T +EP P P P P + S FP S +P PAGP + PA+
Sbjct: 759 TAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAAS 818
Query: 109 QVEARN-DHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
A +PPG P AP P P P KEP G GP G
Sbjct: 819 SSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGC---SKGGGPPREDVG 875
Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG-- 225
P S G A PA P + P+R L GR+ P H
Sbjct: 876 APLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSGLHAAVR 935
Query: 226 ------GAGQGRPWTARPPPIPHTRPRP 247
A +G +A+P P PRP
Sbjct: 936 LKACSLAASEGLS-SAQPNGPPEAEPRP 962
Score = 41.6 bits (96), Expect = 9e-04
Identities = 60/209 (28%), Positives = 74/209 (35%), Gaps = 38/209 (18%)
Query: 66 PDQPLIPA------TEPQS-STTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEAR----- 113
P P +PA ++P+S + P L+A A P TT + P + Q
Sbjct: 661 PPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQES 720
Query: 114 ----NDHRPPGRAPPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGP 168
D PP PP + P P P + P+ +A A E P Q P W P P
Sbjct: 721 PVISKDQSPPPSPPPSYHP--PPPPTKKPEVVVEAPSASETAEEPLQDPNWPP-----PP 773
Query: 169 PRRARSQHPERS--PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGG 226
P Q + P PE A A P P P L S P S + L
Sbjct: 774 PPAPEEQDLSMADFPPPE----EAFFSVASPEPAGPSGSPEL--VSSPAASSSSATALQI 827
Query: 227 AGQGRPWTARPPPIPHTRPRPKCACSTPG 255
G P PPP P P P A S PG
Sbjct: 828 QPPGSP---DPPPAP---PAPAPASSAPG 850
Score = 31.2 bits (69), Expect = 1.2
Identities = 35/122 (28%), Positives = 42/122 (34%), Gaps = 5/122 (4%)
Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSL--RSAHLG 225
PPRR S H P+G KP P + P P GG G G A+
Sbjct: 500 PPRRTHSLHQRGLAVPDGPLGLPPKPERKQQP-QLPRPPTTGGSEGAGAAPCPPNPANSW 558
Query: 226 GAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGPR-VAGANHSASGVWAVSP-RVTR 283
G + RPP P P S+ L P+ +AG S P RVT
Sbjct: 559 VPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTS 618
Query: 284 AR 285
R
Sbjct: 619 LR 620
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 50.4 bits (119), Expect = 2e-06
Identities = 60/222 (27%), Positives = 79/222 (35%), Gaps = 24/222 (10%)
Query: 66 PDQPLIPATEPQSSTTFP-GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPP 124
P + P+ + T P G +P+P P T RR PA R PP R P
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRRRSPSP--PPTRRRRSPSPAPPPRRRRTPTPPPRRRTP 582
Query: 125 RHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPE 184
P PR R P + S + R P+ P + P RRA SP P+
Sbjct: 583 S-----PPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA-----SPSPPPK 632
Query: 185 GRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTR 244
R +H+ P P + R P SL S H G+ R P P+ R
Sbjct: 633 RRVSHSPPPKQRSSP--------VTKRRSP---SLSSKHRKGSSPSRSTREARSPQPNKR 681
Query: 245 PRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARR 286
P P T+ + P GA+ S + SP RR
Sbjct: 682 HSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723
Score = 41.2 bits (95), Expect = 0.001
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 20/190 (10%)
Query: 72 PATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFP 131
P+ P+ T P + A P RR H P Q + R +H
Sbjct: 606 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKH----- 660
Query: 132 RPRMRFPQAWKASRAKEP--RGLPAQRPTWGPGTRSRGPP-RRARSQHPERSPEPEGRGN 188
R ++ + +R+ +P R P+ RP P T S PP RR S P+R P
Sbjct: 661 RKGSSPSRSTREARSPQPNKRHSPSPRPR-APQTSSSPPPVRRGASSSPQRRQSPSPSTR 719
Query: 189 HARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW-TARPPPIPHTRPRP 247
R+ + P P + + + P +S+R + G P A+ PP P P P
Sbjct: 720 PIRRVSRTPEPKK------IKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAP---PSP 770
Query: 248 KCACSTPGTN 257
+P TN
Sbjct: 771 -VQSQSPSTN 779
Score = 35.4 bits (80), Expect = 0.062
Identities = 45/153 (29%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 124 PRHAPRFPRPRMRFPQ--AWKASRAKEPRGLPAQRPTWGPGTRSRGP----PRR-----A 172
P+ P P P+ P+ + K ++ R R TRSR P PRR +
Sbjct: 248 PKPEP-IPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRS 306
Query: 173 RSQHPERSPEPEGRGNHARK--PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
RS P R P P R + R+ P +P P R RS R SA L G+
Sbjct: 307 RSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH-----RRSRSPVRRRRRSSASLSGSSSS 361
Query: 231 RPWT-ARPPPIPHTRPRPKCACSTPGTNRNLGP 262
+ +R PP + PK S P R L P
Sbjct: 362 SSSSRSRSPP----KKPPKRTSSPPRKTRRLSP 390
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/183 (24%), Positives = 62/183 (33%), Gaps = 37/183 (20%)
Query: 111 EARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR 170
E+ + R R+P R R P PR R +S + R + SR P
Sbjct: 160 ESSREKRERSRSPRRRKSRSPSPRRR------SSPVRRER----------KRSHSRSPRH 203
Query: 171 RARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
R +S+ P +PE + K LP P P + + D
Sbjct: 204 RTKSRSPSPAPEKK------EKTPELPEPSVKVKEPSVQEATSTSDILK----------- 246
Query: 231 RPWTARPPPIPHTR-PRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCA 289
+P PIP + P P+ PR + S S + SP TR RR
Sbjct: 247 ---VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHR 303
Query: 290 TRS 292
+RS
Sbjct: 304 SRS 306
Score = 33.1 bits (74), Expect = 0.31
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
Query: 118 PPGRAPPRHAPRFPRPRM-RFP---------------QAWKASRAKEPRGLPAQRPTWGP 161
P R PPR P PR R R P + +SR++ P P +R + P
Sbjct: 323 PRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPP 382
Query: 162 GTRSR-----GPPRRARSQHPERSPEPEGR-------GNHARKPAALPVPGR 201
R PPRR P +P P+ R N RK PGR
Sbjct: 383 RKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 49.7 bits (117), Expect = 3e-06
Identities = 61/223 (27%), Positives = 81/223 (36%), Gaps = 29/223 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPAS--GQVEA---RNDH 116
P+G P P P P P P GP P S G+ + + +
Sbjct: 47 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN 106
Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS-RGPPRRARSQ 175
+P G PP P+ P PQ + P G P P G +RS R PP + +
Sbjct: 107 QPQGPPPPPGKPQGPP-----PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP 161
Query: 176 HPERSPEPEGRGNHARKPAALPVP-GRFPIRPVLGGR-SGP---GDRSLRSAHLGGAGQG 230
P+ +P+G KP P G+ P P G+ GP GD+S S G QG
Sbjct: 162 PPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG 221
Query: 231 -------RPWTARPPPIPHTRPRPKCACSTPGTNRNLGPRVAG 266
+P PPP P P+ G N+ GP G
Sbjct: 222 PPPQGGNQPQGPPPPPGKPQGPPPQ------GGNKPQGPPPPG 258
Score = 47.4 bits (111), Expect = 2e-05
Identities = 63/224 (28%), Positives = 80/224 (35%), Gaps = 49/224 (21%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P+G P P P P P P GP P G ++R+ PPG+
Sbjct: 108 PQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGP---------PPQGD-KSRSPRSPPGK 157
Query: 122 ---APPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP---GTRSR------- 166
PP+ + P+ P P PQ K+P+G P GP G +SR
Sbjct: 158 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG 217
Query: 167 ---GPPRRARSQHPERSPEPEGR-----GNHARKPAALPVPGRFPIRPVLGG------RS 212
GPP + +Q P+ P P G+ KP P PG+ P GG RS
Sbjct: 218 KPQGPPPQGGNQ-PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARS 276
Query: 213 GPGDRSLRSAHLGGAGQGRPWTA-------RPPPI--PHTRPRP 247
PG G QG P A + PP P PRP
Sbjct: 277 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 320
Score = 42.0 bits (97), Expect = 7e-04
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-----PAGPGTTRRAGHMPASGQV 110
Q P P+G P Q +PQ PG P P GP + PA G
Sbjct: 213 QSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGS 269
Query: 111 EARNDHRPPGR--APPRHA---PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++++ PPG+ PP+ P+ P P P G Q+P P +
Sbjct: 270 KSQSARSPPGKPQGPPQQEGNNPQGPPP---------------PAGGNPQQPQAPPAGQP 314
Query: 166 RGPPRRARSQHPERSPE 182
+GPPR + P R P+
Sbjct: 315 QGPPRPPQGGRPSRPPQ 331
Score = 41.6 bits (96), Expect = 9e-04
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 116 HRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS-RGPPRRARS 174
++P G PP P+ P P Q + P G P P G +RS R PP + +
Sbjct: 45 NKPQGPPPPPGKPQGPPP-----QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG 99
Query: 175 QHPERSPEPEGRGNHARKPAALPVPG--RFPIRPVLGGRSGP---GDRSLRSAHLGGAGQ 229
P+ +P+G KP P G R P G GP GD+S G Q
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 159
Query: 230 GRP-----WTARPPPIP 241
G P PPP P
Sbjct: 160 GPPPQGGNQPQGPPPPP 176
Score = 37.4 bits (85), Expect = 0.016
Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 14/147 (9%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P P + +SS + PG + P P G + P Q P
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 253
Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRA--RSQHPER 179
PP P+ P + K+ A+ P G P Q P G +GPP A Q P+
Sbjct: 254 PPPPGKPQGPPAQ----GGSKSQSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQQPQA 308
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRP 206
P + +G P P GR P RP
Sbjct: 309 PPAGQPQG-----PPRPPQGGR-PSRP 329
Score = 30.0 bits (66), Expect = 2.6
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 17/126 (13%)
Query: 149 PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVL 208
P G P P G G + +GPP + Q P P+ G+ +R P + P + P P
Sbjct: 53 PPGKPQGPPPQG-GNKPQGPPPPGKPQ----GPPPQ--GDKSRSPRSPPGKPQGP--PPQ 103
Query: 209 GGRS------GPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGP 262
GG PG G QG P +P P + + S PG + GP
Sbjct: 104 GGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPG--KPQGP 161
Query: 263 RVAGAN 268
G N
Sbjct: 162 PPQGGN 167
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 48.5 bits (114), Expect = 7e-06
Identities = 57/183 (31%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 72 PATEPQSSTTFPGLSAEAPAPAGP--GTTRRAGHMPASGQVEA----RNDHRPPGRAPPR 125
PA P+ P + A APA G G+ RA A Q A R R PG +PP
Sbjct: 74 PAAAPR---LLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPL 130
Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQ----HPERSP 181
PR P R+P+A + P R PG RS P R+R+ P P
Sbjct: 131 Q-PRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDP 189
Query: 182 EPEG--RGNHARK-PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPP 238
P G+H R+ PA P P PG R+ + A AG+G +PP
Sbjct: 190 RPRAPRPGDHPRRSPALRETPSLSP--------PSPGRRNGKRA----AGKGTTPQPQPP 237
Query: 239 PIP 241
P P
Sbjct: 238 PPP 240
Score = 47.0 bits (110), Expect = 2e-05
Identities = 73/254 (28%), Positives = 88/254 (34%), Gaps = 36/254 (14%)
Query: 62 PEGFPDQPLIPATEPQ-SSTTFPG-LSAEAPAPAGPGTTRRAGHM-PASGQVEARNDHRP 118
P G + P P Q S P SA + A A + G + P S + + R
Sbjct: 13 PPGVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRA 72
Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP-GTRSR-----GPPRRA 172
A PR PR A SR + + P G R R PP +
Sbjct: 73 APAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQP 132
Query: 173 RSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGR----SGPGDRS----LRSAHL 224
RS+HP H R P A VP P+RP G R S PG RS RS
Sbjct: 133 RSRHP-----------HTRYPRA--VPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTP 179
Query: 225 GGAG--QGRPWTARPPPIPHTRPRPKC----ACSTPGTNRNLGPRVAGANHSASGVWAVS 278
G AG +G P P P H R P + S P R G R AG +
Sbjct: 180 GEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPP 239
Query: 279 PRVTRARRGCATRS 292
P TR A R+
Sbjct: 240 PCATRREEDMALRT 253
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 48.1 bits (113), Expect = 9e-06
Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 31/219 (14%)
Query: 57 EPHTHPEGF---PDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEAR 113
+P P G P QPL PA P T S+E P P G PA
Sbjct: 350 KPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQ------ 403
Query: 114 NDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRAR 173
+P PP P+P + P ++A P P Q+P G + P +
Sbjct: 404 ---QPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTS 460
Query: 174 SQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
+Q + P A+ P P P + P P G + P + +P
Sbjct: 461 AQQTGPTKPPSQLPGPAKPPPQQPGPAKPP--PQQPGSAKPPSQ-------------QPG 505
Query: 234 TARPPPIPHTRPRP-KCACSTPGTNRNLGPRVAGANHSA 271
+ +PPP +P P K + PG+ + + A SA
Sbjct: 506 STKPPP---QQPGPAKPSPQQPGSTKPPSQQPGSAKPSA 541
Score = 30.8 bits (68), Expect = 1.5
Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)
Query: 57 EPHTHPEGFPDQPLIPATEPQSSTTFPGLS---AEAPAP-------AGPGTTRRAGHMPA 106
+P T G P +PL QS PG + + P P AGPG T
Sbjct: 409 KPPTQQVGTP-KPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKT-------- 459
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLP--AQRPTWGPGTR 164
+ +PP + P P +P P + AK P P + P PG
Sbjct: 460 --SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Query: 165 SRGPPRRARSQHPERSP---EPEGRGNHARKPAA 195
P + ++ P + P +P + KP+A
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 48.1 bits (113), Expect = 9e-06
Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 31/219 (14%)
Query: 57 EPHTHPEGF---PDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEAR 113
+P P G P QPL PA P T S+E P P G PA
Sbjct: 350 KPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQ------ 403
Query: 114 NDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRAR 173
+P PP P+P + P ++A P P Q+P G + P +
Sbjct: 404 ---QPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTS 460
Query: 174 SQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
+Q + P A+ P P P + P P G + P + +P
Sbjct: 461 AQQTGPTKPPSQLPGPAKPPPQQPGPAKPP--PQQPGSAKPPSQ-------------QPG 505
Query: 234 TARPPPIPHTRPRP-KCACSTPGTNRNLGPRVAGANHSA 271
+ +PPP +P P K + PG+ + + A SA
Sbjct: 506 STKPPP---QQPGPAKPSPQQPGSTKPPSQQPGSAKPSA 541
Score = 30.8 bits (68), Expect = 1.5
Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)
Query: 57 EPHTHPEGFPDQPLIPATEPQSSTTFPGLS---AEAPAP-------AGPGTTRRAGHMPA 106
+P T G P +PL QS PG + + P P AGPG T
Sbjct: 409 KPPTQQVGTP-KPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKT-------- 459
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLP--AQRPTWGPGTR 164
+ +PP + P P +P P + AK P P + P PG
Sbjct: 460 --SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Query: 165 SRGPPRRARSQHPERSP---EPEGRGNHARKPAA 195
P + ++ P + P +P + KP+A
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 47.8 bits (112), Expect = 1e-05
Identities = 59/202 (29%), Positives = 67/202 (33%), Gaps = 32/202 (15%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P+G + P P FPG + P GP AG P + PPG
Sbjct: 198 PQGGRGRGRFPGAVP-GGDRFPGPAG----PGGPPPPFPAGQTPPRPPLGPPGPPGPPGP 252
Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEP---RGLPAQRPTWGPGTRSRGPPRRARSQHPE 178
PP P P P + R P G P +P GP GPP P
Sbjct: 253 PPPGQV--LPPPLAGPPN--RGDRPPPPVLFPGQPFGQPPLGP--LPPGPPPPVPGYGPP 306
Query: 179 RSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPP 238
P P +G P PG FP RP G GP HL G P PP
Sbjct: 307 PGPPPPQQG-------PPPPPGPFPPRP--PGPLGPPLTLAPPPHLPG-----PPPGAPP 352
Query: 239 PIPHTRPRPKCACSTPGTNRNL 260
P PH P A P TN +
Sbjct: 353 PAPHVNP----AFFPPPTNSGM 370
Score = 38.1 bits (87), Expect = 0.010
Identities = 43/147 (29%), Positives = 51/147 (34%), Gaps = 22/147 (14%)
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSR 166
SGQ+ PPG + P+ R R RFP A +P GP
Sbjct: 177 SGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGA-----------VPGGDRFPGPAGPGG 225
Query: 167 GPPRRARSQHPERSP-EPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
PP Q P R P P G P P PG+ + P L G GDR
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPG----PPGPPPPGQV-LPPPLAGPPNRGDRPPPPVLFP 280
Query: 226 GAGQGRP-----WTARPPPIPHTRPRP 247
G G+P PPP+P P P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPP 307
Score = 29.3 bits (64), Expect = 4.5
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 21/105 (20%)
Query: 162 GTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRS 221
G GPP + R+ P+G R P A+P RFP G +GPG
Sbjct: 182 GEGKAGPPGGS-----SRAAFPQGGRGRGRFPGAVPGGDRFP------GPAGPG------ 224
Query: 222 AHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGPRVAG 266
G P PP P P P P + L P +AG
Sbjct: 225 ----GPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAG 265
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 47.4 bits (111), Expect = 2e-05
Identities = 50/188 (26%), Positives = 67/188 (35%), Gaps = 21/188 (11%)
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHR--P 118
H E ++ T P+ T P+PAGP AG PA E P
Sbjct: 495 HSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGP-----AGDEPAESPSETPGPRPAGP 549
Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKA----------SRAKEPRGLPAQRPTWGPGTRSRGP 168
G P P PR P + S A R PA+ P+ PG R GP
Sbjct: 550 AGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGP 609
Query: 169 PRRARSQHPERSPEPEGRGNHARKPAALP--VPGRFPIRPVLGGRSGPGDRS-LRSAHL- 224
++ P +P P G +PA P PG P P + G+ + L+ A +
Sbjct: 610 AGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAELQDAEVE 669
Query: 225 GGAGQGRP 232
A G+P
Sbjct: 670 SSAKSGKP 677
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 47.4 bits (111), Expect = 2e-05
Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 31/236 (13%)
Query: 58 PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSAEAPA-----PAGPGTTRRAGHMPAS 107
PH P P PL P T +P + S P L + P AGP P
Sbjct: 260 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 319
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+A P G +P A +P ++ P + A ++++P P +
Sbjct: 320 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP 376
Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGA 227
PP Q P +P+ H P+ + P P L S SL + H
Sbjct: 377 PPTTPIPQLP--APQAHKHPPHLSGPSPFSMNANLPPPPALKPLS-----SLSTHH---- 425
Query: 228 GQGRPWTARPPPI---PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPR 280
P +A PPP+ P ++P P PG ++ A+H +G+ V+P+
Sbjct: 426 ----PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 477
Score = 31.6 bits (70), Expect = 0.90
Identities = 45/175 (25%), Positives = 58/175 (33%), Gaps = 49/175 (28%)
Query: 56 QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLSA-----EAPAPAGPGTTRRAGHMP---A 106
Q P P P PL +P +P +T P L A P +GP ++P A
Sbjct: 357 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 414
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA-SRAKEPRGL---------PAQR 156
+ + + H PP PP P PQ+ S +P GL PA
Sbjct: 415 LKPLSSLSTHHPPSAHPP--------PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASH 466
Query: 157 PTWG----------------PGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAA 195
P G PG GPP P S P G G A+ P +
Sbjct: 467 PPTGLHQVAPQPPFAQHPFVPG----GPPPITPPTCPSTSTPPAGPGTSAQPPCS 517
Score = 29.6 bits (65), Expect = 3.4
Identities = 40/175 (22%), Positives = 55/175 (31%), Gaps = 37/175 (21%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG------PGTTRRAGHMPASGQ 109
Q+ + + Q ++ A P A + AP G PG T A +P G
Sbjct: 165 QDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGS 224
Query: 110 VEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
A P AP P P QA P + PP
Sbjct: 225 PTASQAPNQP------QAPTAPVPHTHIQQA--------------------PALHPQRPP 258
Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
HP P + A +P+A P +P L G+ PG SL++ L
Sbjct: 259 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 308
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 47.4 bits (111), Expect = 2e-05
Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 31/236 (13%)
Query: 58 PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSAEAPA-----PAGPGTTRRAGHMPAS 107
PH P P PL P T +P + S P L + P AGP P
Sbjct: 814 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 873
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+A P G +P A +P ++ P + A ++++P P +
Sbjct: 874 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP 930
Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGA 227
PP Q P +P+ H P+ + P P L S SL + H
Sbjct: 931 PPTTPIPQLP--APQAHKHPPHLSGPSPFSMNANLPPPPALKPLS-----SLSTHH---- 979
Query: 228 GQGRPWTARPPPI---PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPR 280
P +A PPP+ P ++P P PG ++ A+H +G+ V+P+
Sbjct: 980 ----PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 1031
Score = 31.6 bits (70), Expect = 0.90
Identities = 45/175 (25%), Positives = 58/175 (33%), Gaps = 49/175 (28%)
Query: 56 QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLSA-----EAPAPAGPGTTRRAGHMP---A 106
Q P P P PL +P +P +T P L A P +GP ++P A
Sbjct: 911 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA-SRAKEPRGL---------PAQR 156
+ + + H PP PP P PQ+ S +P GL PA
Sbjct: 969 LKPLSSLSTHHPPSAHPP--------PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASH 1020
Query: 157 PTWG----------------PGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAA 195
P G PG GPP P S P G G A+ P +
Sbjct: 1021 PPTGLHQVAPQPPFAQHPFVPG----GPPPITPPTCPSTSTPPAGPGTSAQPPCS 1071
Score = 29.6 bits (65), Expect = 3.4
Identities = 40/175 (22%), Positives = 55/175 (31%), Gaps = 37/175 (21%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG------PGTTRRAGHMPASGQ 109
Q+ + + Q ++ A P A + AP G PG T A +P G
Sbjct: 719 QDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGS 778
Query: 110 VEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
A P AP P P QA P + PP
Sbjct: 779 PTASQAPNQP------QAPTAPVPHTHIQQA--------------------PALHPQRPP 812
Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
HP P + A +P+A P +P L G+ PG SL++ L
Sbjct: 813 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 862
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 47.4 bits (111), Expect = 2e-05
Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 31/236 (13%)
Query: 58 PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSAEAPA-----PAGPGTTRRAGHMPAS 107
PH P P PL P T +P + S P L + P AGP P
Sbjct: 814 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 873
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+A P G +P A +P ++ P + A ++++P P +
Sbjct: 874 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP 930
Query: 168 PPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGA 227
PP Q P +P+ H P+ + P P L S SL + H
Sbjct: 931 PPTTPIPQLP--APQAHKHPPHLSGPSPFSMNANLPPPPALKPLS-----SLSTHH---- 979
Query: 228 GQGRPWTARPPPI---PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPR 280
P +A PPP+ P ++P P PG ++ A+H +G+ V+P+
Sbjct: 980 ----PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 1031
Score = 31.6 bits (70), Expect = 0.90
Identities = 45/175 (25%), Positives = 58/175 (33%), Gaps = 49/175 (28%)
Query: 56 QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLSA-----EAPAPAGPGTTRRAGHMP---A 106
Q P P P PL +P +P +T P L A P +GP ++P A
Sbjct: 911 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA-SRAKEPRGL---------PAQR 156
+ + + H PP PP P PQ+ S +P GL PA
Sbjct: 969 LKPLSSLSTHHPPSAHPP--------PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASH 1020
Query: 157 PTWG----------------PGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAA 195
P G PG GPP P S P G G A+ P +
Sbjct: 1021 PPTGLHQVAPQPPFAQHPFVPG----GPPPITPPTCPSTSTPPAGPGTSAQPPCS 1071
Score = 29.6 bits (65), Expect = 3.4
Identities = 40/175 (22%), Positives = 55/175 (31%), Gaps = 37/175 (21%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAG------PGTTRRAGHMPASGQ 109
Q+ + + Q ++ A P A + AP G PG T A +P G
Sbjct: 719 QDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGS 778
Query: 110 VEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
A P AP P P QA P + PP
Sbjct: 779 PTASQAPNQP------QAPTAPVPHTHIQQA--------------------PALHPQRPP 812
Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
HP P + A +P+A P +P L G+ PG SL++ L
Sbjct: 813 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 862
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 47.0 bits (110), Expect = 2e-05
Identities = 61/201 (30%), Positives = 72/201 (35%), Gaps = 30/201 (14%)
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFP-------QAW----KASRAKEPRGLPAQR 156
G AR H PP AP A P P AW +ASRA R PA
Sbjct: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
Query: 157 PTWGPGTRSRGPPRRARSQHPER-SP---EPEGRGNHARKPAALPVPGRFPIRPVLGGRS 212
P PG RR+ + R SP E G A VP R + P GG S
Sbjct: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR-RLPPPCGGTS 162
Query: 213 -GPGDRSLR----SAHLGGAGQGRPWTARP------PPIPHTRPRPKCACSTPGTNRNLG 261
G G R+LR +A R W A P P P T P + P ++
Sbjct: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVA 222
Query: 262 ---PRVAGANHSASGVWAVSP 279
P VAGA +A W +P
Sbjct: 223 PPPPAVAGAPAAAFRGWVAAP 243
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 46.6 bits (109), Expect = 3e-05
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 71 IPATEPQSSTTFPGLSAEAPAPAG-----PGTTRRAGHMPASGQVEARNDHRPPGRAPPR 125
+P +P+++ L A P P G P R + +G+VE R PP + PP
Sbjct: 297 VPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 356
Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEG 185
H R P + EPR L A+ GP RGPP R R + G
Sbjct: 357 HHVPGHESRGPPPHELRGGPLPEPRPLMAE--PRGPMLDQRGPPLDGRGGRDPRGIDARG 414
Query: 186 RGNHARKPAALPVPG 200
A + L G
Sbjct: 415 MEARAMEARGLDARG 429
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 46.2 bits (108), Expect = 4e-05
Identities = 67/262 (25%), Positives = 85/262 (32%), Gaps = 45/262 (17%)
Query: 60 THPEGFPDQPLIPATEPQSSTTFPGLS-------AEAPAPAGPG-----TTRRAGHMPAS 107
TH PD P S G S A AP+ A PG + G +P
Sbjct: 36 THSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGPGIPVAAAKPGVLPGG 95
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQR----------- 156
G PP +P R R P P W++ R P G A R
Sbjct: 96 GGCTGARTENPP-LSPTRGDCRVPVPAAPISLRWRSGREARPGGPQAGRAGDPKADQAMH 154
Query: 157 --PTWGPGTRSRGPPRRARSQHPERS---PEPEGRGNHARKPAALPVPGRFPIRPVLGGR 211
P W P + PP R Q P S P G AR P R ++ + GG
Sbjct: 155 LQPAWAPKLQ---PPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGG 211
Query: 212 SGPG--------DRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLGPR 263
+ P D L + G G GR TR P+ A +LG +
Sbjct: 212 NRPSAPSRVAVEDPWLEVSSSGRGGPGRGQGLAGSQARGTRD-PEAA---QAMLHHLGAQ 267
Query: 264 VAGANHSASGVWAVSPRVTRAR 285
+ + +G W PR T AR
Sbjct: 268 LQAPGNFQAG-WRAQPRRTGAR 288
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 45.8 bits (107), Expect = 5e-05
Identities = 62/218 (28%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 65 FPDQPLIPATEPQSS------TTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRP 118
F + P +PQSS + FP +++ P P + P G + R P
Sbjct: 246 FSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSDFP----KKPPQPELGDL-TRTSSEP 300
Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPR----GLP--AQRPTWGPGTRS------R 166
P+ RPR P +KA K P+ GLP + P + R R
Sbjct: 301 EVSVLPK------RPR---PAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPERR 351
Query: 167 GPPRRARSQHP----ERSPEPEGRGNHARKP--------AALPVP-----GRFPIRPVLG 209
GPPR+ P +R P+PE G+ RKP ++LP R P+ P G
Sbjct: 352 GPPRKFSQPEPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFG 411
Query: 210 GRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRP 247
P RS H GGA G RP P RP P
Sbjct: 412 AAGTPRWRSGGLVHSGGARPG----LRPSHPPRRRPLP 445
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 45.4 bits (106), Expect = 6e-05
Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 90 PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
P P GP G T G G V D PPG PR K R ++
Sbjct: 1162 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1210
Query: 149 PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
G P Q + GP T GPP + P SP EGR G A+ P A+ PG+ P+
Sbjct: 1211 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1267
Query: 205 RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
P G+ GP G R L + G GQ G P PP +P R
Sbjct: 1268 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1315
Score = 37.0 bits (84), Expect = 0.021
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)
Query: 64 GFPDQPLIPATE-PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
G P P P + P+ S FPG PG + G SG+ R + P G
Sbjct: 710 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 758
Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPE 182
PR R PR A S P G P +R GP Q P P
Sbjct: 759 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 803
Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P+G P +PG R +G G++GP G AG+ P R P
Sbjct: 804 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 860
Query: 241 PHTRPRPKCACSTPGT 256
P P P PGT
Sbjct: 861 P---PGPPGEQGLPGT 873
Score = 36.2 bits (82), Expect = 0.037
Identities = 54/210 (25%), Positives = 66/210 (31%), Gaps = 29/210 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P + +P PQ FPG P PG GH G+V + PPG
Sbjct: 783 PHGPPGERGLPG--PQGPNGFPGPKGP---PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 837
Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
P + PQ A + RG P P PG +G P A + +
Sbjct: 838 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 882
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
P P G PG + GG SGP + G AG G P
Sbjct: 883 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 942
Query: 233 WTARPPPIPHTRPRPKCACSTPGTNRNLGP 262
P P P PG +GP
Sbjct: 943 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972
Score = 32.0 bits (71), Expect = 0.69
Identities = 50/214 (23%), Positives = 69/214 (32%), Gaps = 14/214 (6%)
Query: 69 PLIPATEPQSSTTFPGLSAEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
P++ A E Q+ P GP G T R G + G + + G PR
Sbjct: 379 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 438
Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRRARSQHPER 179
P + + +A A RG+P G PG +G +Q
Sbjct: 439 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 497
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
P +G + +PG R +LG + PG G G P +
Sbjct: 498 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 553
Query: 240 IPHTRPRPKCACSTPGTNRNLGPRVAGANHSASG 273
P P P TPGT GP+ A H G
Sbjct: 554 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 587
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 64 GFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARN---DHRPPG 120
GF P +P + G + A PG G G++ R + P G
Sbjct: 473 GFDGLPGLPGEK--------GHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG 524
Query: 121 RAPPRHAPRFPRPR----MRFPQAWKASRAKEPR-GLPAQRPTWGPGTRSRGPPRRARSQ 175
P+ P P P M PQ K S + G P Q+ T PGT+ P+ A
Sbjct: 525 LLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT--PGTQGLPGPQGAIGP 582
Query: 176 HPERSPE 182
H E+ P+
Sbjct: 583 HGEKGPQ 589
Score = 31.2 bits (69), Expect = 1.2
Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 16/182 (8%)
Query: 84 GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
G A A PG GH A G R + PPG P P P +
Sbjct: 1031 GQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PIGLQGLPGPSGEKGETGDV 1087
Query: 144 SRAKEPRGLPAQRPTWGPGTRS--RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
P G P R GP +GPP + P P +G + P PG
Sbjct: 1088 G-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGEKGEPGESGSPGIQGEPG- 1142
Query: 202 FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLG 261
V G R G++ S G G P P P P PG G
Sbjct: 1143 -----VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1196
Query: 262 PR 263
PR
Sbjct: 1197 PR 1198
Score = 30.8 bits (68), Expect = 1.5
Identities = 54/205 (26%), Positives = 70/205 (34%), Gaps = 29/205 (14%)
Query: 76 PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR----FP 131
PQ + G E P PG G +G+ + D PPG AP + P FP
Sbjct: 843 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG-APGKDGPAGLRGFP 901
Query: 132 RPR-MRFPQAWKASRAKE-------PRGLPAQRPTWGPGTRSRGPPRRARSQHP------ 177
R + + E P G P +R G G GPP R Q P
Sbjct: 902 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG-GPIGPPGRPGPQGPPGAAGE 960
Query: 178 -----ERSP-EPEGRGNHARKPAALPVPGRFP-IRPVLGGRSGPGDRSLRSAHLGGAGQG 230
E+ P P GR + + P LP P P + G + GD + G G+
Sbjct: 961 KGVPGEKGPIGPTGR-DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK-GNKGEH 1018
Query: 231 RPWTARPPPIPHTRPRPKCACSTPG 255
P P P +P A PG
Sbjct: 1019 GPPGPPGPIGPVGQPGAAGADGEPG 1043
Score = 28.5 bits (62), Expect = 7.6
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 157 PTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRF-----PIRPVLGGR 211
P PG RGPP RA + +P P G +L +P RF PV+ +
Sbjct: 335 PVGDPG--ERGPPGRAGLPGSDGAPGPPG--------TSLMLPFRFGSGGGDKGPVVAAQ 384
Query: 212 SGPGDRSLRSAHLGGAGQGRP--WTARPPPI 240
L+ A L G P +T RP P+
Sbjct: 385 EAQAQAILQQARLALRGPPGPMGYTGRPGPL 415
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 45.4 bits (106), Expect = 6e-05
Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 90 PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
P P GP G T G G V D PPG PR K R ++
Sbjct: 1141 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1189
Query: 149 PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
G P Q + GP T GPP + P SP EGR G A+ P A+ PG+ P+
Sbjct: 1190 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1246
Query: 205 RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
P G+ GP G R L + G GQ G P PP +P R
Sbjct: 1247 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1294
Score = 37.0 bits (84), Expect = 0.021
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)
Query: 64 GFPDQPLIPATE-PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
G P P P + P+ S FPG PG + G SG+ R + P G
Sbjct: 689 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 737
Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPE 182
PR R PR A S P G P +R GP Q P P
Sbjct: 738 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 782
Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P+G P +PG R +G G++GP G AG+ P R P
Sbjct: 783 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 839
Query: 241 PHTRPRPKCACSTPGT 256
P P P PGT
Sbjct: 840 P---PGPPGEQGLPGT 852
Score = 36.2 bits (82), Expect = 0.037
Identities = 54/210 (25%), Positives = 66/210 (31%), Gaps = 29/210 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P + +P PQ FPG P PG GH G+V + PPG
Sbjct: 762 PHGPPGERGLPG--PQGPNGFPGPKGP---PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 816
Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
P + PQ A + RG P P PG +G P A + +
Sbjct: 817 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 861
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
P P G PG + GG SGP + G AG G P
Sbjct: 862 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 921
Query: 233 WTARPPPIPHTRPRPKCACSTPGTNRNLGP 262
P P P PG +GP
Sbjct: 922 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951
Score = 33.9 bits (76), Expect = 0.18
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 108 GQVEARNDHRP--PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
GQ E + +P R+P + R RP+ + PQ+ A + +G + PG
Sbjct: 231 GQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLV 290
Query: 166 RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
GPP P +G P PGR + P G GP SL
Sbjct: 291 EGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRF 349
Query: 226 GAGQG 230
G+G G
Sbjct: 350 GSGGG 354
Score = 32.0 bits (71), Expect = 0.69
Identities = 50/214 (23%), Positives = 69/214 (32%), Gaps = 14/214 (6%)
Query: 69 PLIPATEPQSSTTFPGLSAEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
P++ A E Q+ P GP G T R G + G + + G PR
Sbjct: 358 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 417
Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRRARSQHPER 179
P + + +A A RG+P G PG +G +Q
Sbjct: 418 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 476
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
P +G + +PG R +LG + PG G G P +
Sbjct: 477 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 532
Query: 240 IPHTRPRPKCACSTPGTNRNLGPRVAGANHSASG 273
P P P TPGT GP+ A H G
Sbjct: 533 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 566
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 64 GFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARN---DHRPPG 120
GF P +P + G + A PG G G++ R + P G
Sbjct: 452 GFDGLPGLPGEK--------GHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG 503
Query: 121 RAPPRHAPRFPRPR----MRFPQAWKASRAKEPR-GLPAQRPTWGPGTRSRGPPRRARSQ 175
P+ P P P M PQ K S + G P Q+ T PGT+ P+ A
Sbjct: 504 LLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT--PGTQGLPGPQGAIGP 561
Query: 176 HPERSPE 182
H E+ P+
Sbjct: 562 HGEKGPQ 568
Score = 31.2 bits (69), Expect = 1.2
Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 16/182 (8%)
Query: 84 GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
G A A PG GH A G R + PPG P P P +
Sbjct: 1010 GQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PIGLQGLPGPSGEKGETGDV 1066
Query: 144 SRAKEPRGLPAQRPTWGPGTRS--RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
P G P R GP +GPP + P P +G + P PG
Sbjct: 1067 G-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGEKGEPGESGSPGIQGEPG- 1121
Query: 202 FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLG 261
V G R G++ S G G P P P P PG G
Sbjct: 1122 -----VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1175
Query: 262 PR 263
PR
Sbjct: 1176 PR 1177
Score = 30.8 bits (68), Expect = 1.5
Identities = 54/205 (26%), Positives = 70/205 (34%), Gaps = 29/205 (14%)
Query: 76 PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR----FP 131
PQ + G E P PG G +G+ + D PPG AP + P FP
Sbjct: 822 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG-APGKDGPAGLRGFP 880
Query: 132 RPR-MRFPQAWKASRAKE-------PRGLPAQRPTWGPGTRSRGPPRRARSQHP------ 177
R + + E P G P +R G G GPP R Q P
Sbjct: 881 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG-GPIGPPGRPGPQGPPGAAGE 939
Query: 178 -----ERSP-EPEGRGNHARKPAALPVPGRFP-IRPVLGGRSGPGDRSLRSAHLGGAGQG 230
E+ P P GR + + P LP P P + G + GD + G G+
Sbjct: 940 KGVPGEKGPIGPTGR-DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK-GNKGEH 997
Query: 231 RPWTARPPPIPHTRPRPKCACSTPG 255
P P P +P A PG
Sbjct: 998 GPPGPPGPIGPVGQPGAAGADGEPG 1022
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 45.4 bits (106), Expect = 6e-05
Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 90 PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
P P GP G T G G V D PPG PR K R ++
Sbjct: 1248 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1296
Query: 149 PRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
G P Q + GP T GPP + P SP EGR G A+ P A+ PG+ P+
Sbjct: 1297 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1353
Query: 205 RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
P G+ GP G R L + G GQ G P PP +P R
Sbjct: 1354 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1401
Score = 37.0 bits (84), Expect = 0.021
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)
Query: 64 GFPDQPLIPATE-PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
G P P P + P+ S FPG PG + G SG+ R + P G
Sbjct: 796 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 844
Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPE 182
PR R PR A S P G P +R GP Q P P
Sbjct: 845 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 889
Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P+G P +PG R +G G++GP G AG+ P R P
Sbjct: 890 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 946
Query: 241 PHTRPRPKCACSTPGT 256
P P P PGT
Sbjct: 947 P---PGPPGEQGLPGT 959
Score = 36.2 bits (82), Expect = 0.037
Identities = 54/210 (25%), Positives = 66/210 (31%), Gaps = 29/210 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P + +P PQ FPG P PG GH G+V + PPG
Sbjct: 869 PHGPPGERGLPG--PQGPNGFPGPKGP---PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 923
Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
P + PQ A + RG P P PG +G P A + +
Sbjct: 924 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 968
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
P P G PG + GG SGP + G AG G P
Sbjct: 969 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 1028
Query: 233 WTARPPPIPHTRPRPKCACSTPGTNRNLGP 262
P P P PG +GP
Sbjct: 1029 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058
Score = 32.0 bits (71), Expect = 0.69
Identities = 50/214 (23%), Positives = 69/214 (32%), Gaps = 14/214 (6%)
Query: 69 PLIPATEPQSSTTFPGLSAEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
P++ A E Q+ P GP G T R G + G + + G PR
Sbjct: 465 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 524
Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRRARSQHPER 179
P + + +A A RG+P G PG +G +Q
Sbjct: 525 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 583
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
P +G + +PG R +LG + PG G G P +
Sbjct: 584 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 639
Query: 240 IPHTRPRPKCACSTPGTNRNLGPRVAGANHSASG 273
P P P TPGT GP+ A H G
Sbjct: 640 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 673
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 64 GFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARN---DHRPPG 120
GF P +P + G + A PG G G++ R + P G
Sbjct: 559 GFDGLPGLPGEK--------GHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG 610
Query: 121 RAPPRHAPRFPRPR----MRFPQAWKASRAKEPR-GLPAQRPTWGPGTRSRGPPRRARSQ 175
P+ P P P M PQ K S + G P Q+ T PGT+ P+ A
Sbjct: 611 LLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT--PGTQGLPGPQGAIGP 668
Query: 176 HPERSPE 182
H E+ P+
Sbjct: 669 HGEKGPQ 675
Score = 31.2 bits (69), Expect = 1.2
Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 16/182 (8%)
Query: 84 GLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
G A A PG GH A G R + PPG P P P +
Sbjct: 1117 GQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PIGLQGLPGPSGEKGETGDV 1173
Query: 144 SRAKEPRGLPAQRPTWGPGTRS--RGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGR 201
P G P R GP +GPP + P P +G + P PG
Sbjct: 1174 G-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGEKGEPGESGSPGIQGEPG- 1228
Query: 202 FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSTPGTNRNLG 261
V G R G++ S G G P P P P PG G
Sbjct: 1229 -----VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1282
Query: 262 PR 263
PR
Sbjct: 1283 PR 1284
Score = 30.8 bits (68), Expect = 1.5
Identities = 54/205 (26%), Positives = 70/205 (34%), Gaps = 29/205 (14%)
Query: 76 PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR----FP 131
PQ + G E P PG G +G+ + D PPG AP + P FP
Sbjct: 929 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG-APGKDGPAGLRGFP 987
Query: 132 RPR-MRFPQAWKASRAKE-------PRGLPAQRPTWGPGTRSRGPPRRARSQHP------ 177
R + + E P G P +R G G GPP R Q P
Sbjct: 988 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSG-GPIGPPGRPGPQGPPGAAGE 1046
Query: 178 -----ERSP-EPEGRGNHARKPAALPVPGRFP-IRPVLGGRSGPGDRSLRSAHLGGAGQG 230
E+ P P GR + + P LP P P + G + GD + G G+
Sbjct: 1047 KGVPGEKGPIGPTGR-DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK-GNKGEH 1104
Query: 231 RPWTARPPPIPHTRPRPKCACSTPG 255
P P P +P A PG
Sbjct: 1105 GPPGPPGPIGPVGQPGAAGADGEPG 1129
Score = 28.5 bits (62), Expect = 7.6
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 157 PTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRF-----PIRPVLGGR 211
P PG RGPP RA + +P P G +L +P RF PV+ +
Sbjct: 421 PVGDPG--ERGPPGRAGLPGSDGAPGPPG--------TSLMLPFRFGSGGGDKGPVVAAQ 470
Query: 212 SGPGDRSLRSAHLGGAGQGRP--WTARPPPI 240
L+ A L G P +T RP P+
Sbjct: 471 EAQAQAILQQARLALRGPPGPMGYTGRPGPL 501
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 45.4 bits (106), Expect = 6e-05
Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 33/210 (15%)
Query: 58 PHTHPEGFPDQPLIPATEPQSSTTFPGLSAEAPA-PAGPGTTRRAGHMPASGQVEARNDH 116
P T P P PA S+ T +E P PA P TR A + AR
Sbjct: 507 PATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPETAAPVEDMARRTK 566
Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR------ 170
RP AP R P P P++ SR+ P P PG+ S G P+
Sbjct: 567 RP---APAR--PTMPPPQV------SGSRSSPP------APPLPPGSGSPGTPQALPRRL 609
Query: 171 -----RARSQHPERSPEP--EGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAH 223
RA + P P P R R PA+ P P S P L +A
Sbjct: 610 VGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSPVSLSNPAQVDLGAAT 669
Query: 224 L-GGAGQGRPWTARPPPIPHTRPRPKCACS 252
GGA + PP IP +PRP+ S
Sbjct: 670 AEGGAPEAISGVPTPPAIP-PQPRPRSLAS 698
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 45.4 bits (106), Expect = 6e-05
Identities = 46/171 (26%), Positives = 61/171 (35%), Gaps = 18/171 (10%)
Query: 66 PDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPR 125
P + P P++ P +A A P P + A+ A APP
Sbjct: 102 PRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPS 161
Query: 126 HAPRFPRPRMR----------FPQAWKA------SRAKEPRGLPAQRPTWGPGTRSRGPP 169
P P PR + P A A R P + A+ P P + PP
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPP 221
Query: 170 RRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLR 220
++ + P+ P PEG G AA PV R +R LGG G G R R
Sbjct: 222 QQQQPPPPQPQPPPEG-GAVRAGGAARPVSLREVVR-YLGGSGGAGGRLTR 270
Score = 29.3 bits (64), Expect = 4.5
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 168 PPRR-ARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGG 226
PPRR A P R+P RG A AA P P P P + R+ R+A
Sbjct: 101 PPRRGATPPAPPRAP----RGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAA 156
Query: 227 AGQGRPWTARPPP-----IPHTRPRPKCACSTPGTNRNLGPRVA 265
P A+P P P P P + P GPR A
Sbjct: 157 TAPPSPGPAQPGPRAQRAAPLAAP-PPAPAAPPAVAPPAGPRRA 199
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.1 bits (105), Expect = 8e-05
Identities = 72/252 (28%), Positives = 86/252 (34%), Gaps = 42/252 (16%)
Query: 64 GFPDQPLIPATE----------PQSSTTFPGLSAEA--------PAPAGP-------GTT 98
GFP P +P + + PG+ E+ P P GP G T
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 335
Query: 99 RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
AG A G PPG P P FP +A A+ P G AQ P
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEG--AQGPR 392
Query: 159 WGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
PGT P A S +P P +G+ A P PG FP G R PG +
Sbjct: 393 GEPGTPGSPGPAGA-SGNPGTDGIPGAKGS-AGAPGIAGAPG-FP-----GPRGPPGPQG 444
Query: 219 LRSAHLGGAGQ-GRPWTA--RPPPIPHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVW 275
+ LG GQ G P A + P P P PG G R GA GV
Sbjct: 445 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR--GARGEPGGVG 501
Query: 276 AVSPRVTRARRG 287
+ P R G
Sbjct: 502 PIGPPGERGAPG 513
Score = 43.9 bits (102), Expect = 2e-04
Identities = 57/188 (30%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 73 ATEPQSSTTFPGLSAEAPAPAG---PGTTRRAGHMPASGQVEARNDHRPPGRA--PPRHA 127
A P +T FPG + P PG G G AR D PPGRA P
Sbjct: 889 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Query: 128 PRFPRPRMRFPQAWKASRAK---EPRGLPAQRPTWG-PGTR-SRG-PPRRARSQHPERSP 181
P P P S A+ P+GL QR G PG R RG P S P +
Sbjct: 949 PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 1008
Query: 182 EPEGRGNHARK----PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ----GRPW 233
P G+ P L P P R G GP R + G G+ G P
Sbjct: 1009 APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG 1068
Query: 234 TARPPPIP 241
PP P
Sbjct: 1069 APGPPGSP 1076
Score = 37.0 bits (84), Expect = 0.021
Identities = 61/221 (27%), Positives = 77/221 (34%), Gaps = 33/221 (14%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P+GF P P PG+S PG + G +G+ + PPG
Sbjct: 220 PQGFQGNPGEPGE--------PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271
Query: 122 APPRHAPRFP-RPRMRFPQAWKA-SRAKEPRGLPAQRPTWG-PGTRSRGPPRRARSQHPE 178
R P P P ++ + + AK G P + G PG P R E
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 331
Query: 179 RS-PEPEG----RGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
R P G RGN + A P PG P+ P GG PG G G+ P
Sbjct: 332 RGRTGPAGAAGARGNDGQPGPAGP-PG--PVGPA-GGPGFPGAP-------GAKGEAGPT 380
Query: 234 TARPPPIPHTRPRPKCACSTPGTNRNLGPRVAGANHSASGV 274
AR P PR PGT + GP A N G+
Sbjct: 381 GARGPE-GAQGPR-----GEPGTPGSPGPAGASGNPGTDGI 415
Score = 35.4 bits (80), Expect = 0.062
Identities = 51/191 (26%), Positives = 61/191 (31%), Gaps = 13/191 (6%)
Query: 76 PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
P S G E PG AG A GQ A+ + G+ AP P+
Sbjct: 811 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-PQGPS 869
Query: 136 RFPQAWKASRAKEPRGL-PAQRP---TWGPGTRSR-GPPRRARSQHPERSPEPEGRGNHA 190
P + P+G AQ P T PG R GPP + P P P G+
Sbjct: 870 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 929
Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
PGR P L G +GP G G P A PP P +
Sbjct: 930 GARGDSGPPGRAG-EPGLQGPAGP------PGEKGEPGDDGPSGAEGPPGPQGLAGQRGI 982
Query: 251 CSTPGTNRNLG 261
PG G
Sbjct: 983 VGLPGQRGERG 993
Score = 34.3 bits (77), Expect = 0.14
Identities = 58/213 (27%), Positives = 68/213 (31%), Gaps = 34/213 (15%)
Query: 76 PQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQV----EARNDHR--PPGRAPPRHAP- 128
P+ + PG E P G T R G G+V D R PPG R P
Sbjct: 541 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG 600
Query: 129 --RFPRPRMRFPQAWKASRAKEP-----RGLPAQRPTWGPGTRSRGPP-------RRARS 174
FP P+ + KA P RGLP + G + GPP R
Sbjct: 601 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG----AAGPPGPAGPAGERGEQ 656
Query: 175 QHPERS-----PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ 229
P S P P G KP VPG ++G R G+R Q
Sbjct: 657 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR---GERGFPGERGSPGAQ 713
Query: 230 GRPWTARPPPIPHTRPRPKCACSTPGTNRNLGP 262
G P P T PK A G GP
Sbjct: 714 GLQGPRGLPGTPGT-DGPKGASGPAGPPGAQGP 745
Score = 30.0 bits (66), Expect = 2.6
Identities = 49/169 (28%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 73 ATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
A PQ T G A PG T G G + + PPG PP + +
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK-DG 927
Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARK 192
P+ + RA EP GL Q P PG +G P E P P+G A +
Sbjct: 928 PKGARGDSGPPGRAGEP-GL--QGPAGPPG--EKGEPGDDGPSGAEGPPGPQGL---AGQ 979
Query: 193 PAALPVPGRFPIR--PVLGGRSG-PGDRSLRSAHLGGAGQGRPWTARPP 238
+ +PG+ R P L G SG PG + A +G P PP
Sbjct: 980 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA---SGDRGPPGPVGPP 1025
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,293,053
Number of Sequences: 37866
Number of extensions: 1236361
Number of successful extensions: 9845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 1259
Number of HSP's that attempted gapping in prelim test: 7072
Number of HSP's gapped (non-prelim): 3283
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.