Guide to the Human Genome
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Name: LOC729172 Sequence: fasta or formatted (120aa) NCBI GI: 113413381
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {120aa} PREDICTED: hypothetical protein
alt mRNA {120aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         14           3
 C cysteine            1.7          2           1
 D aspartate           5.8          7           1
 E glutamate           0.8          1           1
 F phenylalanine       1.7          2           1
 G glycine            14.2         17           2
 H histidine           2.5          3           1
 I isoleucine          3.3          4           1
 K lysine              4.2          5           1
 L leucine             4.2          5           3
 M methionine          0.8          1           1
 N asparagine          2.5          3           1
 P proline             7.5          9           1
 Q glutamine           4.2          5           1
 R arginine           10.0         12           2
 S serine             14.2         17           2
 T threonine           7.5          9           1
 V valine              2.5          3           2
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729172             1.000   PREDICTED: hypothetical protein 
LOC729172             1.000   PREDICTED: hypothetical protein 
LOC100293409          0.027   PREDICTED: similar to Mucin-19 
LOC100291118          0.027   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.027   PREDICTED: hypothetical protein XP_002343203 
LOC339192             0.027   PREDICTED: hypothetical protein 
LOC339192             0.027   PREDICTED: hypothetical protein 
LOC339192             0.027   PREDICTED: hypothetical protein 
HECTD1                0.027   HECT domain containing 1 
COL7A1                0.023   alpha 1 type VII collagen precursor 
NAP5                  0.023   Nck-associated protein 5 isoform 1 
HCN2                  0.023   hyperpolarization activated cyclic nucleotide-gated...
LOC100287499          0.018   PREDICTED: hypothetical protein 
LOC100287499          0.018   PREDICTED: hypothetical protein XP_002343643 
ATAD2B                0.018   ATPase family, AAA domain containing 2B 
SOX4                  0.018   SRY (sex determining region Y)-box 4 
ZRANB2                0.018   zinc finger protein 265 isoform 1 
ZRANB2                0.018   zinc finger protein 265 isoform 2 
ZNF516                0.018   zinc finger protein 516 
LOC100128997          0.014   PREDICTED: hypothetical protein 
LOC100128997          0.014   PREDICTED: hypothetical protein 
LOC100128997          0.014   PREDICTED: hypothetical protein 
RLN3                  0.014   relaxin 3 preproprotein 
FLJ37078              0.014   hypothetical protein LOC222183 
MAGI2                 0.014   membrane associated guanylate kinase, WW and PDZ dom...
PLEKHG4               0.014   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.014   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.014   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.014   pleckstrin homology domain containing, family G (wi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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