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Search of human proteins with 194097454
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194097454 hypothetical protein LOC284680 [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194097454 hypothetical protein LOC284680 [Homo sapiens] 541 e-154
gi|111548650 family with sequence similarity 170, member A [Homo... 57 1e-08
gi|169194829 PREDICTED: family with sequence similarity 170, mem... 55 5e-08
gi|89031947 PREDICTED: family with sequence similarity 170, memb... 55 5e-08
gi|37550464 PREDICTED: family with sequence similarity 170, memb... 55 5e-08
gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo ... 34 0.11
gi|24429588 zinc finger protein 532 [Homo sapiens] 33 0.19
gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo ... 33 0.33
gi|108860697 zinc finger protein 592 [Homo sapiens] 32 0.56
gi|38158015 mastermind-like 3 [Homo sapiens] 31 0.95
gi|157676340 zinc finger protein 142 [Homo sapiens] 30 1.6
gi|5729790 CCCTC-binding factor [Homo sapiens] 30 2.1
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens] 29 3.6
gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens] 29 4.7
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 29 4.7
gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens] 29 4.7
gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens] 29 4.7
gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens] 29 4.7
gi|114431236 zinc finger protein 462 [Homo sapiens] 28 6.2
gi|91982772 mucin 17 [Homo sapiens] 28 6.2
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 28 6.2
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 28 6.2
gi|110626177 zinc finger protein 699 [Homo sapiens] 28 6.2
gi|23308733 zinc finger protein 337 [Homo sapiens] 28 6.2
gi|156523052 ripply1 homolog [Homo sapiens] 28 6.2
gi|27436940 reelin isoform b [Homo sapiens] 28 8.1
gi|27436938 reelin isoform a [Homo sapiens] 28 8.1
gi|5803229 kaiso [Homo sapiens] 28 8.1
gi|35038528 PAS domain containing serine/threonine kinase [Homo ... 28 8.1
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 28 8.1
>gi|194097454 hypothetical protein LOC284680 [Homo sapiens]
Length = 261
Score = 541 bits (1395), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSII 60
MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSII
Sbjct: 1 MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSII 60
Query: 61 VRQGIQNTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQ 120
VRQGIQNTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQ
Sbjct: 61 VRQGIQNTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQ 120
Query: 121 QDEGKWDNCLSEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQ 180
QDEGKWDNCLSEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQ
Sbjct: 121 QDEGKWDNCLSEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQ 180
Query: 181 NGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKALWSKEQKARLGDRLSSGSC 240
NGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKALWSKEQKARLGDRLSSGSC
Sbjct: 181 NGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKALWSKEQKARLGDRLSSGSC 240
Query: 241 QAFNSPAEHLRQIGGEAYLCL 261
QAFNSPAEHLRQIGGEAYLCL
Sbjct: 241 QAFNSPAEHLRQIGGEAYLCL 261
>gi|111548650 family with sequence similarity 170, member A [Homo
sapiens]
Length = 329
Score = 57.4 bits (137), Expect = 1e-08
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 131 SEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASR--WHPAQQNGYKCVAC 188
S+ N+ S S E +S S T +D A W +NG++C+AC
Sbjct: 174 SDVSTRNLLSDSEPSGEEKEHEERTESDSLPGSPTVEDTPRAKTPDWLVTMENGFRCMAC 233
Query: 189 CRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKAL 222
CR++ T++ L+ H++ G REGFSC V++ + L
Sbjct: 234 CRVFTTMEALQEHVQFGIREGFSCHVFHLTMAQL 267
>gi|169194829 PREDICTED: family with sequence similarity 170, member
B [Homo sapiens]
Length = 321
Score = 55.5 bits (132), Expect = 5e-08
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 139 CSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFL 198
C S+ SPE P + L Q++ W G +CVACCR+ P+LD L
Sbjct: 207 CKSNCSPE---PEDID------LLECCLQELREPPDWLVTTNYGVRCVACCRVLPSLDAL 257
Query: 199 KSHIKRGFREGFSCKVYYRKL 219
H + G REGFSC++++ ++
Sbjct: 258 LEHAQHGIREGFSCQIFFEEM 278
>gi|89031947 PREDICTED: family with sequence similarity 170, member
B [Homo sapiens]
Length = 321
Score = 55.5 bits (132), Expect = 5e-08
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 139 CSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFL 198
C S+ SPE P + L Q++ W G +CVACCR+ P+LD L
Sbjct: 207 CKSNCSPE---PEDID------LLECCLQELREPPDWLVTTNYGVRCVACCRVLPSLDAL 257
Query: 199 KSHIKRGFREGFSCKVYYRKL 219
H + G REGFSC++++ ++
Sbjct: 258 LEHAQHGIREGFSCQIFFEEM 278
>gi|37550464 PREDICTED: family with sequence similarity 170, member
B [Homo sapiens]
Length = 321
Score = 55.5 bits (132), Expect = 5e-08
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 139 CSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFL 198
C S+ SPE P + L Q++ W G +CVACCR+ P+LD L
Sbjct: 207 CKSNCSPE---PEDID------LLECCLQELREPPDWLVTTNYGVRCVACCRVLPSLDAL 257
Query: 199 KSHIKRGFREGFSCKVYYRKL 219
H + G REGFSC++++ ++
Sbjct: 258 LEHAQHGIREGFSCQIFFEEM 278
>gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo
sapiens]
Length = 628
Score = 34.3 bits (77), Expect = 0.11
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 24 DIMFSRATSLPDIAKTAVPTEASS-PAQALPPQYQSIIVRQGIQNTALSPDCSLGDTQHG 82
++ ++A S D+++ + E P P+ V G N+ LS + L + G
Sbjct: 2 EVSAAKAPSAADLSEIEIKKEMKKDPLTNKAPEKPLHEVPSG--NSLLSSETILRTNKRG 59
Query: 83 EKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEV--QQDEGKWDNCLS 131
E+ RR C + +SY D E +L+ D EV + +EG W+ L+
Sbjct: 60 ERRRRRCQV------AFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN 104
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 33.5 bits (75), Expect = 0.19
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 113 AYDFPEVQQDEGKWDNCLSEDMAENICSSSSSPE-------NTCPR-EATKKSRHGLDSI 164
A F + G+ + + + N CS +S TCP A +S H +
Sbjct: 770 ATHFQQAADTSGQKTCTICQMLLPNQCSYASHQRIHQHKSPYTCPECGAICRSVHFQTHV 829
Query: 165 TSQDILMASRWHPAQQNGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYR 217
T + H ++ G++CV C +Y + LKSHI +G C+V+Y+
Sbjct: 830 TKNCL------HYTRRVGFRCVHCNVVYSDVAALKSHI-----QGSHCEVFYK 871
>gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo
sapiens]
Length = 665
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 67 NTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEV--QQDEG 124
N+ LS + L + GE+ RR C + +SY D E +L+ D EV + +EG
Sbjct: 81 NSLLSSETILRTNKRGERRRRRCQV------AFSYLPQNDDELELKVGDIIEVVGEVEEG 134
Query: 125 KWDNCLS 131
W+ L+
Sbjct: 135 WWEGVLN 141
>gi|108860697 zinc finger protein 592 [Homo sapiens]
Length = 1267
Score = 32.0 bits (71), Expect = 0.56
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 176 HPAQQNGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYR 217
H A++ GY+C+ C ++ TL LKSHI+ C+V+++
Sbjct: 792 HYARKVGYRCIHCGVVHLTLALLKSHIQER-----HCQVFHK 828
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 31.2 bits (69), Expect = 0.95
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 11/43 (25%)
Query: 8 SISGPPISSSALSAFPDIMFSRATSLPDIAKT-AVPTEASSPA 49
S SGPP S+ S ATSLP +A T A P ASSPA
Sbjct: 379 SSSGPPFST----------VSTATSLPSVASTPAAPNPASSPA 411
>gi|157676340 zinc finger protein 142 [Homo sapiens]
Length = 1687
Score = 30.4 bits (67), Expect = 1.6
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 128 NCLSEDMAENICSSSSSPE-NTCPREATKKSRHGLDSIT---SQDILMASRWHPAQQNGY 183
N L + + C P N+ P EA KK H LD + + A + H +Q +
Sbjct: 969 NSLPTEAPKKHCFDPVPPAGNSSPTEAPKK--HHLDPVPPAGNSSPTEALKKHRFEQGKF 1026
Query: 184 KCVACCRMYPTLDFLKSHIKRGFREG 209
C +C + L + SH+ G R G
Sbjct: 1027 HCNSCPFLCSRLSSITSHVAEGCRGG 1052
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 2.1
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 107 KESQLEAYDFPEVQQDEGKWDNCLSEDMAENICSSSSSPENT-CPREATKKS------RH 159
K+ + YDF E QQ+ LSE AE + + P+ T ++ KK+ +
Sbjct: 219 KDVDVSVYDFEEEQQE-----GLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSY 273
Query: 160 GLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFLKSHI 202
++ D M S + +KC C R + T+ L++H+
Sbjct: 274 TCPRRSNLDRHMKSH---TDERPHKCHLCGRAFRTVTLLRNHL 313
>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
Length = 619
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 13 PISSSALSAFPDIMFSRATSLPDIAKT---AVPTEASSPAQALPPQYQSII 60
P S+S L D +F R S +I + PT +SSP L P+ Q ++
Sbjct: 521 PASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEML 571
>gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens]
Length = 1156
Score = 28.9 bits (63), Expect = 4.7
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 178 AQQNGYKCVACCRMYPTLDFLKSHIKRGFREG-FSC 212
+ Q Y C+ C + LD LK H+ +G F+C
Sbjct: 579 SDQKTYSCIFCPESFDRLDLLKDHVAIHINDGYFTC 614
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 28.9 bits (63), Expect = 4.7
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 149 CPREATKKSRHGLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFLKSHIK----- 203
CP E KS T+ L A Q+N +KC C +PT L +H +
Sbjct: 336 CPAEGCGKS------FTTVYNLKAHMKGHEQENSFKCEVCEESFPTQAKLSAHQRSHFEP 389
Query: 204 -RGFREGFS-CKVYYRKLKALWS 224
R ++ FS CK + + AL+S
Sbjct: 390 ERPYQCAFSGCKKTFITVSALFS 412
>gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens]
Length = 1023
Score = 28.9 bits (63), Expect = 4.7
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 178 AQQNGYKCVACCRMYPTLDFLKSHIKRGFREG-FSC 212
+ Q Y C+ C + LD LK H+ +G F+C
Sbjct: 493 SDQKTYSCIFCPESFDRLDLLKDHVAIHINDGYFTC 528
>gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens]
Length = 1160
Score = 28.9 bits (63), Expect = 4.7
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 178 AQQNGYKCVACCRMYPTLDFLKSHIKRGFREG-FSC 212
+ Q Y C+ C + LD LK H+ +G F+C
Sbjct: 583 SDQKTYSCIFCPESFDRLDLLKDHVAIHINDGYFTC 618
>gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens]
Length = 1061
Score = 28.9 bits (63), Expect = 4.7
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 178 AQQNGYKCVACCRMYPTLDFLKSHIKRGFREG-FSC 212
+ Q Y C+ C + LD LK H+ +G F+C
Sbjct: 497 SDQKTYSCIFCPESFDRLDLLKDHVAIHINDGYFTC 532
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 28.5 bits (62), Expect = 6.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 182 GYKCVACCRMYPTLDFLKSHIKRGFREG 209
GYKC C ++PTL + +H+++ + G
Sbjct: 1967 GYKCKFCVEVHPTLRAICNHLRKHVQYG 1994
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 28.5 bits (62), Expect = 6.2
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 28 SRATSLPDIAKTAVPTEA---SSPAQALPPQYQSIIVRQGIQNTALSPDCSLGDTQHGEK 84
+R TS P + TAVPT S+P + G QNTA C G T G K
Sbjct: 4100 TRTTSFPTVTTTAVPTNTTIKSNPTSTPTVPRTTTCFGDGCQNTA--SRCKNGGTWDGLK 4157
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.5 bits (62), Expect = 6.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 183 YKCVACCRMYPTLDFLKSHIK-RGFREGFSCKVYYRKLKAL 222
Y C AC R Y TL LK H +R + C+ Y K+ AL
Sbjct: 309 YVCAACERSYVTLSSLKRHSNVHSWRRKYPCR-YCEKVFAL 348
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.5 bits (62), Expect = 6.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 183 YKCVACCRMYPTLDFLKSHIK-RGFREGFSCKVYYRKLKAL 222
Y C AC R Y TL LK H +R + C+ Y K+ AL
Sbjct: 309 YVCAACERSYVTLSSLKRHSNVHSWRRKYPCR-YCEKVFAL 348
>gi|110626177 zinc finger protein 699 [Homo sapiens]
Length = 642
Score = 28.5 bits (62), Expect = 6.2
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 177 PAQQNGYKCVACCRMYPTLDFLKSHIK----------RGFREGFSCKVYYRKLKALWSKE 226
P ++ Y+C C + + F ++H+K + +GFSC + K + S +
Sbjct: 245 PTEEKPYECKECTKAFSCSSFFRAHMKIHIGKTNYECKECGKGFSCSSSLTEHKRIHSGD 304
Query: 227 QKARLGDRLSSGSCQAFNSPAEHLR-QIGGEAYLC 260
+ + + SC +S ++H R G + Y C
Sbjct: 305 KPYECKECGKAFSCS--SSLSKHKRIHSGDKPYEC 337
>gi|23308733 zinc finger protein 337 [Homo sapiens]
Length = 751
Score = 28.5 bits (62), Expect = 6.2
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 149 CPREATKKSRHGLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFLKSHIKRGFRE 208
C R T KS D+ + R H ++ Y+C C R + + H+KR RE
Sbjct: 690 CKRGYTSKS----------DLTVHERIHTGERP-YECQECGRKFSNKSYYSKHLKRHLRE 738
Query: 209 GFSC 212
C
Sbjct: 739 KRFC 742
>gi|156523052 ripply1 homolog [Homo sapiens]
Length = 151
Score = 28.5 bits (62), Expect = 6.2
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 30 ATSLPDIAKTAVPTEASSPAQALPPQYQSIIVRQGIQNTALSPDCSLGDTQHGEKLRRNC 89
AT +P +A P A +P ALP LSP C L Q R
Sbjct: 10 ATPVPALALALAPDLAQAPL-ALPG--------------LLSPSCLLSSGQEVNGSERGT 54
Query: 90 TIYRPWFS 97
++RPW S
Sbjct: 55 CLWRPWLS 62
>gi|27436940 reelin isoform b [Homo sapiens]
Length = 3458
Score = 28.1 bits (61), Expect = 8.1
Identities = 17/58 (29%), Positives = 22/58 (37%)
Query: 65 IQNTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQQD 122
I N L P C HG+ LR C + P Y K E +D E++ D
Sbjct: 2847 IDNFYLGPGCLDNCRGHGDCLREQCICDPGYSGPNCYLTHTLKTFLKERFDSEEIKPD 2904
>gi|27436938 reelin isoform a [Homo sapiens]
Length = 3460
Score = 28.1 bits (61), Expect = 8.1
Identities = 17/58 (29%), Positives = 22/58 (37%)
Query: 65 IQNTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQQD 122
I N L P C HG+ LR C + P Y K E +D E++ D
Sbjct: 2847 IDNFYLGPGCLDNCRGHGDCLREQCICDPGYSGPNCYLTHTLKTFLKERFDSEEIKPD 2904
>gi|5803229 kaiso [Homo sapiens]
Length = 672
Score = 28.1 bits (61), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 176 HPAQQNGYKCVACCRMYPTLDFLKSHIK 203
H + Y+C+AC + + F+ SHIK
Sbjct: 543 HHTGERRYQCLACGKSFINYQFMSSHIK 570
>gi|35038528 PAS domain containing serine/threonine kinase [Homo
sapiens]
Length = 1323
Score = 28.1 bits (61), Expect = 8.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 123 EGKWDN-CLSEDMAENICSSS----SSPENTCPRE 152
E +W + CLS A+NIC+S ++PE+T P E
Sbjct: 66 EDRWSSYCLSSLAAQNICTSKLHCPAAPEHTDPSE 100
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 28.1 bits (61), Expect = 8.1
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 10 SGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPP 54
S PP SSSA A P + S P T P S+P A PP
Sbjct: 123 SAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,912,183
Number of Sequences: 37866
Number of extensions: 487483
Number of successful extensions: 1924
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1887
Number of HSP's gapped (non-prelim): 56
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.