Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 190014591
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190014591 vestigial like 4 isoform b [Homo sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190014591 vestigial like 4 isoform b [Homo sapiens] 590 e-169
gi|190014593 vestigial like 4 isoform a [Homo sapiens] 549 e-156
gi|190014597 vestigial like 4 isoform d [Homo sapiens] 421 e-118
gi|190014595 vestigial like 4 isoform c [Homo sapiens] 420 e-118
gi|153792074 proline rich 12 [Homo sapiens] 36 0.035
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 35 0.10
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 34 0.13
gi|40807477 retinoic acid induced 1 [Homo sapiens] 34 0.13
gi|239757609 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo ... 34 0.17
gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo ... 34 0.17
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 34 0.17
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|112363092 RING1 and YY1 binding protein [Homo sapiens] 33 0.22
gi|105553088 t-complex 10 [Homo sapiens] 33 0.38
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom... 32 0.50
gi|27262663 colony stimulating factor 1 isoform b precursor [Hom... 32 0.50
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom... 32 0.50
gi|24432032 zinc finger protein 503 [Homo sapiens] 32 0.50
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.50
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.65
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 32 0.85
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 32 0.85
gi|223468602 t-complex 10-like 2 [Homo sapiens] 31 1.1
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 31 1.1
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 31 1.1
gi|27502381 Meis homeobox 2 isoform g [Homo sapiens] 31 1.1
>gi|190014591 vestigial like 4 isoform b [Homo sapiens]
Length = 290
Score = 590 bits (1522), Expect = e-169
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 METPLDVLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSM 60
METPLDVLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSM
Sbjct: 1 METPLDVLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSM 60
Query: 61 EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL 120
EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL
Sbjct: 61 EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL 120
Query: 121 YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC 180
YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC
Sbjct: 121 YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC 180
Query: 181 PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH 240
PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH
Sbjct: 181 PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH 240
Query: 241 FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS 290
FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 241 FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS 290
>gi|190014593 vestigial like 4 isoform a [Homo sapiens]
Length = 296
Score = 549 bits (1414), Expect = e-156
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 23 EAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFN 82
EAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFN
Sbjct: 29 EAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFN 88
Query: 83 PHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDA 142
PHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDA
Sbjct: 89 PHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDA 148
Query: 143 SRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA 202
SRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA
Sbjct: 149 SRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA 208
Query: 203 TTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSS 262
TTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSS
Sbjct: 209 TTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSS 268
Query: 263 PESASRRGQPASPSAHMVSHSHSPSVVS 290
PESASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 269 PESASRRGQPASPSAHMVSHSHSPSVVS 296
>gi|190014597 vestigial like 4 isoform d [Homo sapiens]
Length = 206
Score = 421 bits (1082), Expect = e-118
Identities = 205/206 (99%), Positives = 206/206 (100%)
Query: 85 LNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASR 144
+NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASR
Sbjct: 1 MNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASR 60
Query: 145 PAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATT 204
PAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATT
Sbjct: 61 PAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATT 120
Query: 205 CDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPE 264
CDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPE
Sbjct: 121 CDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPE 180
Query: 265 SASRRGQPASPSAHMVSHSHSPSVVS 290
SASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 181 SASRRGQPASPSAHMVSHSHSPSVVS 206
>gi|190014595 vestigial like 4 isoform c [Homo sapiens]
Length = 210
Score = 420 bits (1080), Expect = e-118
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 86 NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRP 145
NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRP
Sbjct: 6 NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRP 65
Query: 146 AGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTC 205
AGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTC
Sbjct: 66 AGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTC 125
Query: 206 DPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPES 265
DPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPES
Sbjct: 126 DPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPES 185
Query: 266 ASRRGQPASPSAHMVSHSHSPSVVS 290
ASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 186 ASRRGQPASPSAHMVSHSHSPSVVS 210
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 36.2 bits (82), Expect = 0.035
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 160 NRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGK 219
+RP V S A+N P++ G +AP P + PP T E+ ++
Sbjct: 1668 HRPPVPVRRSGQAKN------PVSAGGSSAPPPKAPAPPPKPETPEKTTSEKPPEQTPET 1721
Query: 220 NYKEPEPAPNSVSITGSVDDHFAK---ALGDTWLQIKAAKDGASSSPESASRRGQPAS 274
EP PAP S+ V+ K G+ L+ + A G + PE + GQPA+
Sbjct: 1722 AMPEP-PAPEKPSLLRPVEKEKEKEKVTRGERPLRGERATSGRQTRPERSLATGQPAT 1778
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 34.7 bits (78), Expect = 0.10
Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 70 DNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGL 129
D + K ++ K AN R + S+ P A + + S+P L
Sbjct: 1695 DEERRKKEEQVIQVWNKKNANEKGRS---QTSKLPPRFAKKQATGIQQAQSSASVPPLAS 1751
Query: 130 EQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAA 189
T S+ AS A L TLTP + P + + P+ S +A
Sbjct: 1752 APLPPSTSASVPASTSAPLPATLTPVPASTSAPVPASTLA-----------PVLAS-TSA 1799
Query: 190 PGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFA-KALGDT 248
P PAS P SA+ + V + + P AP I SV + L
Sbjct: 1800 PVPASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASVTILASA 1859
Query: 249 WLQIKAAKDGASSSPESASRRGQPASP 275
+ I A+ ++S+P A PA+P
Sbjct: 1860 SIPILASALASTSAPTPAPAASSPAAP 1886
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 34.3 bits (77), Expect = 0.13
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 27/107 (25%)
Query: 101 SRSPIERAVAPTMSLHG--------SHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTL 152
+ S RAV P +S+ G SHLY+ L RP +S T+
Sbjct: 68 AHSSCRRAVRPGLSVAGKASAPRPASHLYSKL-------------------RPRLVSVTV 108
Query: 153 TPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPP 199
+ +PS C+S+G S G AAPGP PP
Sbjct: 109 STSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 34.3 bits (77), Expect = 0.13
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 194 SYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIK 253
+YR+P A +CD +R L K+Y P+P P+ G+ A D + +
Sbjct: 29 NYRQPSQAGLSCDR------QRLLAKDYYNPQPYPSYEGGAGTPSGTAAAVAADKYHR-- 80
Query: 254 AAKDGASSSPESASRRGQPASPSAHMVSHSHSP 286
G+ + P +G+PA P + S P
Sbjct: 81 ----GSKALPTQQGLQGRPAFPGYGVQDSSPYP 109
>gi|239757609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 571
Score = 33.9 bits (76), Expect = 0.17
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 118 SHLYT--SLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC 175
SH T + P G E+P ++ ++ +A RP+ L + PG R Q+R A + C
Sbjct: 188 SHTLTPAAQPPRGPEKPTSV--HAEEALRPSRLHQAVDPGSRGQSRSKCAAGLPAASMPC 245
Query: 176 NLSHCPI-------AHSGCAAPG----PASYRRPPSAATTC 205
+ H P AH+ C G P+ R P + C
Sbjct: 246 SRGHIPADQIPSPQAHARCLETGGKGAPSLPRAPLPSTLAC 286
>gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo
sapiens]
Length = 571
Score = 33.9 bits (76), Expect = 0.17
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 118 SHLYT--SLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC 175
SH T + P G E+P ++ ++ +A RP+ L + PG R Q+R A + C
Sbjct: 188 SHTLTPAAQPPRGPEKPTSV--HAEEALRPSRLHQAVDPGSRGQSRSKCAAGLPAASMPC 245
Query: 176 NLSHCPI-------AHSGCAAPG----PASYRRPPSAATTC 205
+ H P AH+ C G P+ R P + C
Sbjct: 246 SRGHIPADQIPSPQAHARCLETGGKGAPSLPRAPLPSTLAC 286
>gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo
sapiens]
Length = 571
Score = 33.9 bits (76), Expect = 0.17
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 118 SHLYT--SLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC 175
SH T + P G E+P ++ ++ +A RP+ L + PG R Q+R A + C
Sbjct: 188 SHTLTPAAQPPRGPEKPTSV--HAEEALRPSRLHQAVDPGSRGQSRSKCAAGLPAASMPC 245
Query: 176 NLSHCPI-------AHSGCAAPG----PASYRRPPSAATTC 205
+ H P AH+ C G P+ R P + C
Sbjct: 246 SRGHIPADQIPSPQAHARCLETGGKGAPSLPRAPLPSTLAC 286
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
sapiens]
Length = 1692
Score = 33.9 bits (76), Expect = 0.17
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 21 KREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRI 80
+++A L+ R QT P+++A +S + PP +P R EP + L + S SR
Sbjct: 207 EKKARLQERSRSQT-PLSTAAASSQDAAPPSAPPDRSKGAEPSQQALGPEQKQASSRSRS 265
Query: 81 FNPHLNKTANGDCRRDPR-----ERSRSP 104
P K G ++ + ER R P
Sbjct: 266 EPPRERKKTPGLSEQNGKGALKSERKRVP 294
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 132 PLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPG 191
PL+ + D +R G +P ++PG ++ + S GAR+ + S P + A G
Sbjct: 24 PLSNSSQRADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASG 82
Query: 192 PASYRRPPSAATTC 205
A R P SAAT C
Sbjct: 83 HAHGRWPRSAATAC 96
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 132 PLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPG 191
PL+ + D +R G +P ++PG ++ + S GAR+ + S P + A G
Sbjct: 24 PLSNSSQRADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASG 82
Query: 192 PASYRRPPSAATTC 205
A R P SAAT C
Sbjct: 83 HAHGRWPRSAATAC 96
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 132 PLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPG 191
PL+ + D +R G +P ++PG ++ + S GAR+ + S P + A G
Sbjct: 24 PLSNSSQRADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASG 82
Query: 192 PASYRRPPSAATTC 205
A R P SAAT C
Sbjct: 83 HAHGRWPRSAATAC 96
>gi|112363092 RING1 and YY1 binding protein [Homo sapiens]
Length = 228
Score = 33.5 bits (75), Expect = 0.22
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 22 REAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIF 81
R+ +PRI + VA ++ PPP K++ +E D++ + +S
Sbjct: 47 RKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEKKE-KVEKQDKEKPEKDKEISPSVTKK 105
Query: 82 NPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSL-----GLEQPLALT 136
N + D +DP + S I+ A A T + +H TS P L Q LA+T
Sbjct: 106 NTNKKTKPKSDILKDPPSEANS-IQSANATTKTSETNH--TSRPRLKNVDRSTAQQLAVT 162
Query: 137 -----------KNSLDASRPAGLSPTLTPGERQQNRPS 163
K +S + + T + G QQN+ S
Sbjct: 163 VGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSS 200
>gi|105553088 t-complex 10 [Homo sapiens]
Length = 326
Score = 32.7 bits (73), Expect = 0.38
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)
Query: 154 PGERQQNRPSVITCASAGARNCNLSHC-PIAHSGCAAPGPASYRRPPSAATTCDPVVEEH 212
PG RQ P+ + GA +S I H +P + R+ P A+ + E+
Sbjct: 164 PGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQASQATTLQEQT 223
Query: 213 FRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQP 272
A S S+ GS + F + A + ASS+P+SA R+ P
Sbjct: 224 ---------AAARGADRSSSVLGSSEGGFLSRV--------QADEFASSAPDSAERQNLP 266
Query: 273 ASPSAHM 279
+P + +
Sbjct: 267 VNPPSSL 273
>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 32.3 bits (72), Expect = 0.50
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 190 PGPASYRRPPSAATTCDPVVEEHFRRS-LGKNYKEPEPAPNSVSITGSVDDHFAKALGDT 248
PG A R P S + +P + S +G + P+P P+ + ++D A+G
Sbjct: 246 PGSAKQRPPRSTCQSFEPPETPVVKDSTIGGS---PQPRPSVGAFNPGMEDILDSAMGTN 302
Query: 249 WLQIKAAKDGAS-----------SSPESASRRGQPASPSAHMVSHSHSPS 287
W+ +A+ + + S P S + +PA PS + + S P+
Sbjct: 303 WVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPA 352
>gi|27262663 colony stimulating factor 1 isoform b precursor [Homo
sapiens]
Length = 438
Score = 32.3 bits (72), Expect = 0.50
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 190 PGPASYRRPPSAATTCDPVVEEHFRRS-LGKNYKEPEPAPNSVSITGSVDDHFAKALGDT 248
PG A R P S + +P + S +G + P+P P+ + ++D A+G
Sbjct: 246 PGSAKQRPPRSTCQSFEPPETPVVKDSTIGGS---PQPRPSVGAFNPGMEDILDSAMGTN 302
Query: 249 WLQIKAAKDGAS-----------SSPESASRRGQPASPSAHMVSHSHSPS 287
W+ +A+ + + S P S + +PA PS + + S P+
Sbjct: 303 WVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPA 352
>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 32.3 bits (72), Expect = 0.50
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 190 PGPASYRRPPSAATTCDPVVEEHFRRS-LGKNYKEPEPAPNSVSITGSVDDHFAKALGDT 248
PG A R P S + +P + S +G + P+P P+ + ++D A+G
Sbjct: 246 PGSAKQRPPRSTCQSFEPPETPVVKDSTIGGS---PQPRPSVGAFNPGMEDILDSAMGTN 302
Query: 249 WLQIKAAKDGAS-----------SSPESASRRGQPASPSAHMVSHSHSPS 287
W+ +A+ + + S P S + +PA PS + + S P+
Sbjct: 303 WVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPA 352
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 32.3 bits (72), Expect = 0.50
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 111 PTMSLHGSHLYTSLP-SLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCAS 169
P HG L + P SL Q A SL S+PAG SP PSV+T +
Sbjct: 372 PQFLPHGVALDPTKPGSLVGAQLAAAAAGSLGCSKPAGSSPLAGASP-----PSVMTASL 426
Query: 170 AGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA 202
C HC +G AA + P +AA
Sbjct: 427 CRDPYCLSYHCASHLAGAAAASASCAHDPAAAA 459
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.3 bits (72), Expect = 0.50
Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 10/199 (5%)
Query: 97 PRERSRSPIERAVAPTMSLHGSHL-YTSLPSLGL-EQPLALTKNSLDASRPAGLSPTLTP 154
P S+S AVA T S G H S+P+ G+ + S A +P+ L+
Sbjct: 2468 PVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPA 2527
Query: 155 GERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFR 214
ER+ + S + +S+ + + + S + S + +S P A P +
Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPK 2587
Query: 215 RSLGKNYKEPEPAP-------NSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESAS 267
++ + + PEP P +S S + S + + + ++ +SSS S+S
Sbjct: 2588 EAVREG-RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Query: 268 RRGQPASPSAHMVSHSHSP 286
PA P + SP
Sbjct: 2647 SSPSPAKPGPQALPKPASP 2665
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 0.65
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 100 RSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQ 159
RSRSP+ R + SL GS +S + S + LSP+ +P R++
Sbjct: 340 RSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP-PRRR 398
Query: 160 NRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDP-----VVEEHFR 214
+RPS R+ +P P R + + P V +H +
Sbjct: 399 HRPSPPATPPPKTRH--------------SPTPQQSNRTRKSRVSVSPGRTSGKVTKH-K 443
Query: 215 RSLGKNYKEPEPAPNSVSITGSVDDHFAK-ALGDTWLQIK---------AAKDGASSSPE 264
+ + P P P V ++ S +D K A D+ Q + ++ G+SSS E
Sbjct: 444 GTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSE 503
Query: 265 ------SASRRGQPASPSAHMVSHSHSPS 287
S + G+ H S S SPS
Sbjct: 504 DERPKRSHVKNGEVGRRRRHSPSRSASPS 532
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 31.6 bits (70), Expect = 0.85
Identities = 50/190 (26%), Positives = 66/190 (34%), Gaps = 32/190 (16%)
Query: 97 PRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGE 156
P E R P R VAP + P G P K G+ +PG
Sbjct: 1141 PLEPKRPPPPRPVAPPT--RPAPPQRPPPPSGARSPAPTRKEF------GGIGAPPSPGV 1192
Query: 157 RQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRR-----PPSAATTCDPVVEE 211
++ + + + N S P +G A PGPA Y PP A P +
Sbjct: 1193 ARREMEAPKSPGTTRKDNIGRSQ-PSPQAGLAGPGPAGYSTARPTIPPRAGVISAP--QS 1249
Query: 212 HFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTW----LQIKAAKDGASSSPESAS 267
H R S G+ P S S T + G T+ L+ +AA SS P A
Sbjct: 1250 HARASAGR------LTPESQSKTSET------SKGSTFLPEPLKPQAAFPPQSSLPPPAQ 1297
Query: 268 RRGQPASPSA 277
R +P P A
Sbjct: 1298 RLQEPLVPVA 1307
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 31.6 bits (70), Expect = 0.85
Identities = 50/190 (26%), Positives = 66/190 (34%), Gaps = 32/190 (16%)
Query: 97 PRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGE 156
P E R P R VAP + P G P K G+ +PG
Sbjct: 1141 PLEPKRPPPPRPVAPPT--RPAPPQRPPPPSGARSPAPTRKEF------GGIGAPPSPGV 1192
Query: 157 RQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRR-----PPSAATTCDPVVEE 211
++ + + + N S P +G A PGPA Y PP A P +
Sbjct: 1193 ARREMEAPKSPGTTRKDNIGRSQ-PSPQAGLAGPGPAGYSTARPTIPPRAGVISAP--QS 1249
Query: 212 HFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTW----LQIKAAKDGASSSPESAS 267
H R S G+ P S S T + G T+ L+ +AA SS P A
Sbjct: 1250 HARASAGR------LTPESQSKTSET------SKGSTFLPEPLKPQAAFPPQSSLPPPAQ 1297
Query: 268 RRGQPASPSA 277
R +P P A
Sbjct: 1298 RLQEPLVPVA 1307
>gi|223468602 t-complex 10-like 2 [Homo sapiens]
Length = 353
Score = 31.2 bits (69), Expect = 1.1
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 154 PGERQQNRPSVITCASAGARNCNLSHC-PIAHSGCAAPGPASYRRPPSAATTCDPVVEEH 212
PG RQ P+ + GA +S I H + + R+ P A+ + E+
Sbjct: 191 PGRRQDRSPAPTGRPTPGAERREVSEDGKIMHPSSRSLQNSGGRKSPVQASQAATLQEQT 250
Query: 213 FRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQP 272
+ A S S+ GS + F + A++ ASSSP+SA R+ P
Sbjct: 251 AAAGV---------ADRSSSVLGSSEGGFLSRV--------QAEEFASSSPDSAERQNLP 293
Query: 273 ASPSAHM 279
+P + +
Sbjct: 294 VNPPSSL 300
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 31.2 bits (69), Expect = 1.1
Identities = 50/217 (23%), Positives = 71/217 (32%), Gaps = 40/217 (18%)
Query: 5 LDVLSRAASLVHADDEKREAALRGE---PRIQTLPVASALSSHRTGPPPISPSKRKFSME 61
L L S D ALRG R P LSS+R S S+R +
Sbjct: 506 LGALGGNRSAARTDIAPTPGALRGYRSWTRRAIAPTPGTLSSYR------SRSRRTIAST 559
Query: 62 PGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLY 121
P + H + RD R RSP+ RA+APT
Sbjct: 560 PA-----------TLRGEKSRAHTSLAPTPGALRDALRRDRSPVRRAIAPT--------- 599
Query: 122 TSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCP 181
P L+ A +P G R ++R ++ + + + +H
Sbjct: 600 ----------PGTLSGYRSRARTAIAPTPGTLRGYRPRSRRAIASTPATLRGEKSRAHTS 649
Query: 182 IAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLG 218
+A + A G S R TTC P+ E R +G
Sbjct: 650 LAPAPGALRGDGSRARRAIVPTTC-PLCEIWSRVGIG 685
Score = 29.3 bits (64), Expect = 4.2
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 100 RSRSPIERAVAPTM-SLH--GSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGE 156
R RSP+ RAVAPT +LH GS T+ S P AL + S+ +P E
Sbjct: 821 RDRSPVRRAVAPTPGTLHCDGSRKCTATGS----TPGALPGDRSGVSKATAPAPGALCSE 876
Query: 157 RQQNRPSV--ITCASAGARN 174
R + R S+ C G R+
Sbjct: 877 RSRARRSIAPTPCLLCGDRS 896
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 131 QPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASA-GARNCNLSHCPIAHSGCAA 189
Q L + L AS A PT PGE Q+ P CA G L + +
Sbjct: 201 QQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPG 260
Query: 190 PGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT 234
P PA+ +AA E + S EP+P ++ +T
Sbjct: 261 PQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVT 305
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 131 QPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASA-GARNCNLSHCPIAHSGCAA 189
Q L + L AS A PT PGE Q+ P CA G L + +
Sbjct: 188 QQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPG 247
Query: 190 PGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT 234
P PA+ +AA E + S EP+P ++ +T
Sbjct: 248 PQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVT 292
>gi|27502381 Meis homeobox 2 isoform g [Homo sapiens]
Length = 388
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 19 DEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMS 78
D+KR+ P++ T + + L H T P P K++ + + G L +N ++
Sbjct: 260 DKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARR 319
Query: 79 RIFNPHLNKTANGDCRRDP 97
RI P ++++ DP
Sbjct: 320 RIVQPMIDQSNRAGFLLDP 338
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,069,941
Number of Sequences: 37866
Number of extensions: 766407
Number of successful extensions: 2473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 2392
Number of HSP's gapped (non-prelim): 178
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.