Search of human proteins with 189491675

Search of human proteins with 189491675

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|189491675 hypothetical protein LOC84908 [Homo sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|189491675 hypothetical protein LOC84908 [Homo sapiens]             278   1e-75
gi|170295795 hypothetical protein LOC387071 [Homo sapiens]            241   1e-64
gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]              235   1e-62
gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo ...   235   1e-62
gi|114155142 nuclear pore complex-associated protein TPR [Homo s...    32   0.17 
gi|21361749 ubiquitin thioesterase 49 [Homo sapiens]                   31   0.28 
gi|6912708 translocase of inner mitochondrial membrane 10 homolo...    31   0.28 
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]              30   0.49 
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]              30   0.49 
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]              30   0.49 
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]              30   0.49 
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]              30   0.49 
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]              30   0.49 
gi|51317384 GLE1 RNA export mediator homolog isoform 1 [Homo sap...    30   0.83 
gi|119943086 Tax1 (human T-cell leukemia virus type I) binding p...    30   0.83 
gi|21361682 Tax1 (human T-cell leukemia virus type I) binding pr...    30   0.83 
gi|4557627 GLE1 RNA export mediator homolog isoform 2 [Homo sapi...    30   0.83 
gi|48928027 trefoil factor 3 precursor [Homo sapiens]                  29   1.1  
gi|4506467 radixin [Homo sapiens]                                      29   1.1  
gi|210147558 hypothetical protein LOC202051 [Homo sapiens]             29   1.1  
gi|155722985 SMC5 protein [Homo sapiens]                               29   1.4  
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ...    28   1.8  
gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]            28   1.8  
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap...    28   2.4  
gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1 ...    28   3.1  
gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]         28   3.1  
gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]         28   3.1  
gi|70980531 GGA binding partner [Homo sapiens]                         28   3.1  
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]                   28   3.1  
gi|110347443 TATA element modulatory factor 1 [Homo sapiens]           27   4.1  

>gi|189491675 hypothetical protein LOC84908 [Homo sapiens]
          Length = 138

 Score =  278 bits (711), Expect = 1e-75
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60
           MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
Sbjct: 1   MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60

Query: 61  LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH 120
           LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH
Sbjct: 61  LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH 120

Query: 121 LIPTMTKKMKEALLSIGK 138
           LIPTMTKKMKEALLSIGK
Sbjct: 121 LIPTMTKKMKEALLSIGK 138


>gi|170295795 hypothetical protein LOC387071 [Homo sapiens]
          Length = 138

 Score =  241 bits (616), Expect = 1e-64
 Identities = 121/138 (87%), Positives = 125/138 (90%)

Query: 1   MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60
           M ELQQLRVQE V+SMVKSLERENI K QGLMF CSASCCEDSQA  +QVHQCIE C VP
Sbjct: 1   MVELQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVP 60

Query: 61  LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH 120
           LAQ QALVTSELEKFQD LARCTMHCNDKAKDSIDAGSKELQVKQQLD CVTKCVDDH+H
Sbjct: 61  LAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120

Query: 121 LIPTMTKKMKEALLSIGK 138
           LI TMTKKMKEA+LSIGK
Sbjct: 121 LISTMTKKMKEAVLSIGK 138


>gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]
          Length = 135

 Score =  235 bits (599), Expect = 1e-62
 Identities = 114/135 (84%), Positives = 125/135 (92%)

Query: 4   LQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQ 63
           + +++VQ+ VESMVKSLERENIRKMQGLMFRCS SCCEDSQAS++QVHQCI+ CHV LAQ
Sbjct: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60

Query: 64  AQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIP 123
           AQALVTSELEKFQD LA+CT  CN+KAKDSI AGSKELQVKQQLD CVTKCVDDHMHLIP
Sbjct: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120

Query: 124 TMTKKMKEALLSIGK 138
           TMTKKMKEALL+IGK
Sbjct: 121 TMTKKMKEALLAIGK 135


>gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo
           sapiens]
          Length = 135

 Score =  235 bits (599), Expect = 1e-62
 Identities = 114/135 (84%), Positives = 125/135 (92%)

Query: 4   LQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQ 63
           + +++VQ+ VESMVKSLERENIRKMQGLMFRCS SCCEDSQAS++QVHQCI+ CHV LAQ
Sbjct: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60

Query: 64  AQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIP 123
           AQALVTSELEKFQD LA+CT  CN+KAKDSI AGSKELQVKQQLD CVTKCVDDHMHLIP
Sbjct: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120

Query: 124 TMTKKMKEALLSIGK 138
           TMTKKMKEALL+IGK
Sbjct: 121 TMTKKMKEALLAIGK 135


>gi|114155142 nuclear pore complex-associated protein TPR [Homo
            sapiens]
          Length = 2363

 Score = 32.0 bits (71), Expect = 0.17
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 4    LQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQ 63
            LQ  + Q +  + V+    E  +K +  +  C AS  E  +    +V +C+ RC   L +
Sbjct: 1096 LQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCE-DLEK 1154

Query: 64   AQALVTSELEKFQDRL 79
               L+  ++EK  D++
Sbjct: 1155 QNRLLHDQIEKLSDKV 1170



 Score = 28.1 bits (61), Expect = 2.4
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 42  DSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKEL 101
           +++A++KQ+ +  E      A+ + +   +LEK Q+++       N K    +D  SK  
Sbjct: 667 EAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQ-NTKISTQLDFASKRY 725

Query: 102 QVKQ 105
           ++ Q
Sbjct: 726 EMLQ 729


>gi|21361749 ubiquitin thioesterase 49 [Homo sapiens]
          Length = 640

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 42  DSQASMKQVHQCIERCHVPLAQAQALVTSELEKF------QDRLARCTMHCNDKAKDS 93
           D      + + CIE+  VPL Q + L+T  L KF      + R+  C   CN K + S
Sbjct: 470 DLSLEFPERYHCIEKGFVPLNQTECLLTEMLAKFTETEALEGRIYACD-QCNSKRRKS 526


>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
           [Homo sapiens]
          Length = 90

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 60  PLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHM 119
           PL   Q     E+E   D   R T  C+ K    +    KE ++ +    C+ +CV  ++
Sbjct: 3   PLRAQQLAAELEVEMMADMYNRMTSACHRKC---VPPHYKEAELSKGESVCLDRCVSKYL 59

Query: 120 HLIPTMTKKMKE 131
            +   M KK+ E
Sbjct: 60  DIHERMGKKLTE 71


>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2852

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 36  SASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKA 90
           +ASC  D   SM  V     R     A+A A     L+ ++ +L +CT+HC +KA
Sbjct: 298 TASCTSDLCQSMGDVATWC-RALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKA 351


>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2924

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 36  SASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKA 90
           +ASC  D   SM  V     R     A+A A     L+ ++ +L +CT+HC +KA
Sbjct: 370 TASCTSDLCQSMGDVATWC-RALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKA 423


>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 36  SASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKA 90
           +ASC  D   SM  V     R     A+A A     L+ ++ +L +CT+HC +KA
Sbjct: 298 TASCTSDLCQSMGDVATWC-RALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKA 351


>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2924

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 36  SASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKA 90
           +ASC  D   SM  V     R     A+A A     L+ ++ +L +CT+HC +KA
Sbjct: 370 TASCTSDLCQSMGDVATWC-RALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKA 423


>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 36  SASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKA 90
           +ASC  D   SM  V     R     A+A A     L+ ++ +L +CT+HC +KA
Sbjct: 298 TASCTSDLCQSMGDVATWC-RALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKA 351


>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2924

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 36  SASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKA 90
           +ASC  D   SM  V     R     A+A A     L+ ++ +L +CT+HC +KA
Sbjct: 370 TASCTSDLCQSMGDVATWC-RALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKA 423


>gi|51317384 GLE1 RNA export mediator homolog isoform 1 [Homo
           sapiens]
          Length = 698

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 2   AELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL 61
           A++  L+++EA +  VK  E+E +RK +G +   +    ++    + Q     E      
Sbjct: 213 AKILNLKLREAEQQRVKQAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASE------ 266

Query: 62  AQAQALVTSELEKFQDR 78
            Q +AL+  +L  FQ R
Sbjct: 267 -QHKALLKVDLAAFQTR 282


>gi|119943086 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform b [Homo sapiens]
          Length = 747

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 2   AELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL 61
           A L +L++++ ++      E+E + K+  ++ + +A   E      ++++   ERC    
Sbjct: 147 AGLLELKIEKTMK------EKEELLKLIAVLEKETAQLREQVGRMERELNHEKERCDQLQ 200

Query: 62  AQAQAL--VTSEL----EKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTK 113
           A+ + L  VT  L    E+F+ R +  T   +   +D +    K ++ + +LDS   K
Sbjct: 201 AEQKGLTEVTQSLKMENEEFKKRFSDATSKAHQLEEDIVSVTHKAIEKETELDSLKDK 258


>gi|21361682 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform a [Homo sapiens]
          Length = 789

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 2   AELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL 61
           A L +L++++ ++      E+E + K+  ++ + +A   E      ++++   ERC    
Sbjct: 147 AGLLELKIEKTMK------EKEELLKLIAVLEKETAQLREQVGRMERELNHEKERCDQLQ 200

Query: 62  AQAQAL--VTSEL----EKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTK 113
           A+ + L  VT  L    E+F+ R +  T   +   +D +    K ++ + +LDS   K
Sbjct: 201 AEQKGLTEVTQSLKMENEEFKKRFSDATSKAHQLEEDIVSVTHKAIEKETELDSLKDK 258


>gi|4557627 GLE1 RNA export mediator homolog isoform 2 [Homo
           sapiens]
          Length = 659

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 2   AELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL 61
           A++  L+++EA +  VK  E+E +RK +G +   +    ++    + Q     E      
Sbjct: 213 AKILNLKLREAEQQRVKQAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASE------ 266

Query: 62  AQAQALVTSELEKFQDR 78
            Q +AL+  +L  FQ R
Sbjct: 267 -QHKALLKVDLAAFQTR 282


>gi|48928027 trefoil factor 3 precursor [Homo sapiens]
          Length = 130

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 22  RENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSEL-------EK 74
           RE++ +       C   C  ++  +MK+V  C+    V +A A+AL    L         
Sbjct: 12  RESLPQANNPEQLCKQRCINEASWTMKRVLSCVPEPTVVMA-ARALCMLGLVLALLSSSS 70

Query: 75  FQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTK--CVDDHMHLIPTMTKKMKEA 132
            ++ +      C   AKD +D G   +  K+    C  +  C D  +  +P   K ++EA
Sbjct: 71  AEEYVGLSANQCAVPAKDRVDCGYPHVTPKE----CNNRGCCFDSRIPGVPWCFKPLQEA 126


>gi|4506467 radixin [Homo sapiens]
          Length = 583

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 3   ELQQLRVQEAVESMVKSLER---ENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHV 59
           E+QQ++ Q   E   K LER   EN +K + +  +       + +  M+++ Q  E+   
Sbjct: 301 EVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLKQIEEQTIK 360

Query: 60  PLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHM 119
              + +      LE  Q+R          +AK+  +   KE +  ++  S + K   D M
Sbjct: 361 AQKELEEQTRKALELDQER---------KRAKEEAERLEKERRAAEEAKSAIAKQAADQM 411


>gi|210147558 hypothetical protein LOC202051 [Homo sapiens]
          Length = 205

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 4   LQQLR-VQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLA 62
           L QLR V E+ E ++  L    + + +  + +      E      K  H          A
Sbjct: 19  LDQLRDVIESQEELIHQLRNVMVLQDENFVSKEEFQAVEKKLVEEKAAH----------A 68

Query: 63  QAQALVTSELEKFQDRLARCTMHCNDKAKDSI-------DAGSKELQVKQQLDSCVTKCV 115
           + + L+  E EK Q  L    +      K+ +          SK LQ   + D  +TKC 
Sbjct: 69  KTKVLLAKEEEKLQFALGEVEVLSKQLEKEKLAFEKALSSVKSKVLQESSKKDQLITKCN 128

Query: 116 DDHMHLI 122
           +   H+I
Sbjct: 129 EIESHII 135


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 28/131 (21%)

Query: 3   ELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLA 62
           ELQQ  + +  E + +     N RKM            ED Q  +K      E C     
Sbjct: 354 ELQQALIVKQNEELDRQRRIGNTRKM-----------IEDLQNELKTT----ENCENLQP 398

Query: 63  QAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLI 122
           Q  A +T++L + QD  A C     DK ++      +E   K++      K VDDH+   
Sbjct: 399 QIDA-ITNDLRRIQDEKALCEGEIIDKRRE------RETLEKEK------KSVDDHIVRF 445

Query: 123 PTMTKKMKEAL 133
             +  + ++ L
Sbjct: 446 DNLMNQKEDKL 456


>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor [Homo
            sapiens]
          Length = 1419

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 68   VTSELEKFQDRLARCTMH-CNDKAKDSIDAGSKE 100
            +T +L    D +  C +H C DKAKD + A  +E
Sbjct: 1345 ITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEE 1378


>gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]
          Length = 766

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 26  RKMQGLMFRCSASC------CEDSQASMKQVHQCIERCHVPLAQAQALVTSELE 73
           +K+QG+   C          CE+ QA+ +++HQ ++   + L Q  + + S+L+
Sbjct: 321 QKLQGVQSECDLRVQEVRRQCEEGQAASRRLHQSLDGRELALRQELSQLGSQLQ 374


>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
           sapiens]
          Length = 1023

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 10/50 (20%), Positives = 30/50 (60%)

Query: 5   QQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCI 54
           ++++ Q++ +  + +  +EN   M+G + +C+A   +++++S  Q   C+
Sbjct: 721 EEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCV 770


>gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1
           [Homo sapiens]
          Length = 925

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 34  RCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDS 93
           RC A+C E     +     CIE  H+          ++    + RL R    C+D  KD 
Sbjct: 121 RCDAACVELGNCCLDYQETCIEPEHI-------WTCNKFRCGEKRLTRSLCACSDDCKDK 173

Query: 94  ID 95
            D
Sbjct: 174 GD 175


>gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
          Length = 284

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 12  AVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSE 71
           A E +++  E E  R ++ L         EDS  + ++     E     L +   LV  E
Sbjct: 45  AKEKLLRVSEDERDRVLEEL------HKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEE 98

Query: 72  LEKFQDRLARCTMHCN--DKAKDSIDAGSKELQVKQQLD 108
           L++ Q+RLA         +KA D  + G K ++ + Q D
Sbjct: 99  LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD 137


>gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
          Length = 284

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 12  AVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSE 71
           A E +++  E E  R ++ L         EDS  + ++     E     L +   LV  E
Sbjct: 45  AKEKLLRVSEDERDRVLEEL------HKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEE 98

Query: 72  LEKFQDRLARCTMHCN--DKAKDSIDAGSKELQVKQQLD 108
           L++ Q+RLA         +KA D  + G K ++ + Q D
Sbjct: 99  LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD 137


>gi|70980531 GGA binding partner [Homo sapiens]
          Length = 441

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 12/97 (12%)

Query: 44  QASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKE--L 101
           Q+S+KQ  + IE+ ++   + QA    EL   Q +     +   D  K+ +    KE  +
Sbjct: 222 QSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQR---LLEMLDTEKELLKEKIKEALI 278

Query: 102 QVKQQLDSCVTKCVDDHMHLIPTMTKKMKEALLSIGK 138
           Q  Q+    + KC+++         ++ KEAL+S  K
Sbjct: 279 QQSQEQKEILEKCLEEE-------RQRNKEALVSAAK 308


>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
          Length = 1417

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 2    AELQQLRVQEAVESMVKSLERENIRKMQG-LMFRCSASCCEDSQASMKQVHQCIERCHVP 60
            AE+++L  +  VES+ ++   E I   +    ++ SA   +  ++S++Q+++ +E+  + 
Sbjct: 1327 AEIKKLSAE--VESLKEAYHMEMISHQENHAKWKISA---DSQKSSVQQLNEQLEKAKLE 1381

Query: 61   LAQAQALVTSELEKFQDR 78
            L +AQ  V++  ++ QDR
Sbjct: 1382 LEEAQDTVSNLHQQVQDR 1399


>gi|110347443 TATA element modulatory factor 1 [Homo sapiens]
          Length = 1093

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 17/137 (12%)

Query: 3   ELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLA 62
           ELQ L+     +  V+   RENI+K+  ++        E  +  + ++   ++       
Sbjct: 603 ELQHLKQVLDGKEEVEKQHRENIKKLNSMV--------ERQEKDLGRLQVDMDELEEKNR 654

Query: 63  QAQALVTSELEKFQDRLARCTMHCNDKAKDS---IDAGSKELQVKQQLDSCVTKCVDDHM 119
             QA + S  ++  D      +H  + AKDS     A S+E++ K++L + + K  ++  
Sbjct: 655 SIQAALDSAYKELTD------LHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEAR 708

Query: 120 HLIPTMTKKMKEALLSI 136
               T+  ++ +  L++
Sbjct: 709 QQQETLAIQVGDLRLAL 725


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,227
Number of Sequences: 37866
Number of extensions: 164122
Number of successful extensions: 600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 52
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.