Guide to the Human Genome
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Name: LOC100287852 Sequence: fasta or formatted (135aa) NCBI GI: 239748186
Description:

PREDICTED: similar to CG5323

Not currently referenced in the text

Other entries for this name:
alt mRNA {135aa} PREDICTED: hypothetical protein XP_002342431
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         10           2
 C cysteine            6.7          9           2
 D aspartate           4.4          6           2
 E glutamate           5.9          8           1
 F phenylalanine       1.5          2           1
 G glycine             3.0          4           1
 H histidine           4.4          6           1
 I isoleucine          4.4          6           1
 K lysine             11.9         16           2
 L leucine             9.6         13           2
 M methionine          5.2          7           1
 N asparagine          2.2          3           2
 P proline             0.7          1           1
 Q glutamine          10.4         14           2
 R arginine            2.2          3           1
 S serine              6.7          9           1
 T threonine           5.9          8           2
 V valine              7.4         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to CG5323 
LOC100287852          1.000   PREDICTED: hypothetical protein XP_002342431 
FAM136A               0.847   hypothetical protein LOC84908 
FAM136B               0.778   hypothetical protein LOC387071 
FOXP4                 0.028   forkhead box P4 isoform 2 
FOXP4                 0.028   forkhead box P4 isoform 1 
RRBP1                 0.020   ribosome binding protein 1 
RRBP1                 0.020   ribosome binding protein 1 
BIRC6                 0.020   baculoviral IAP repeat-containing 6 
MYH7                  0.016   myosin, heavy chain 7, cardiac muscle, beta 
LOC202051             0.012   hypothetical protein LOC202051 
LIN9                  0.012   lin-9 homolog 
TIMM10                0.012   translocase of inner mitochondrial membrane 10 homolo...
MYH7B                 0.012   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
FOXP4                 0.012   forkhead box P4 isoform 3 
RASSF10               0.012   Ras association (RalGDS/AF-6) domain family (N-term...
TDRD12                0.012   tudor domain containing 12 
CC2D2A                0.008   coiled-coil and C2 domain containing 2A isoform a [...
CC2D2A                0.008   coiled-coil and C2 domain containing 2A isoform b [...
ARHGAP11A             0.008   Rho GTPase activating protein 11A isoform 1 
ARMC4                 0.008   armadillo repeat containing 4 
CCDC150               0.008   coiled-coil domain containing 150 
NUMA1                 0.008   nuclear mitotic apparatus protein 1 
RTKN2                 0.008   rhotekin 2 
ABCB11                0.008   ATP-binding cassette, sub-family B (MDR/TAP), member...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
EMILIN3               0.008   elastin microfibril interfacer 3 
ZNF433                0.008   zinc finger protein 433 
GCC2                  0.004   GRIP and coiled-coil domain-containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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