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Search of human proteins with 189027121
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189027121 solute carrier family 35, member F1 [Homo sapiens]
(408 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189027121 solute carrier family 35, member F1 [Homo sapiens] 811 0.0
gi|31542943 solute carrier family 35, member F2 [Homo sapiens] 414 e-116
gi|27735127 solute carrier family 35, member F3 [Homo sapiens] 48 2e-05
gi|31542711 ANT2-binding protein [Homo sapiens] 45 9e-05
gi|122937311 solute carrier family 35, member F4 [Homo sapiens] 45 1e-04
gi|27881499 solute carrier family 35, member C2 isoform a [Homo ... 43 4e-04
gi|21314776 solute carrier family 35, member C2 isoform a [Homo ... 43 4e-04
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 37 0.042
gi|87299628 biorientation of chromosomes in cell division 1-like... 36 0.072
gi|134254450 patched isoform S [Homo sapiens] 33 0.36
gi|134254435 patched isoform S [Homo sapiens] 33 0.36
gi|134254468 patched isoform S [Homo sapiens] 33 0.36
gi|134254452 patched isoform S [Homo sapiens] 33 0.36
gi|134254432 patched isoform L' [Homo sapiens] 33 0.36
gi|134254466 patched isoform M [Homo sapiens] 33 0.36
gi|134254446 patched isoform L [Homo sapiens] 33 0.36
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 33 0.47
gi|156564359 hypothetical protein LOC113278 [Homo sapiens] 32 0.79
gi|189491742 ataxin 7 isoform b [Homo sapiens] 32 1.0
gi|4506797 ataxin 7 isoform a [Homo sapiens] 32 1.0
gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens] 32 1.4
gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo ... 32 1.4
gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo ... 32 1.4
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 32 1.4
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 31 2.3
gi|52145305 patched 2 [Homo sapiens] 31 2.3
gi|89257348 homeo box HB9 [Homo sapiens] 31 2.3
gi|13128980 proline rich 14 [Homo sapiens] 31 2.3
gi|21687252 zinc finger protein 296 [Homo sapiens] 30 3.0
gi|5453666 G protein-coupled receptor 19 [Homo sapiens] 30 3.0
>gi|189027121 solute carrier family 35, member F1 [Homo sapiens]
Length = 408
Score = 811 bits (2095), Expect = 0.0
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQRIRKVLNREM 60
MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQRIRKVLNREM
Sbjct: 1 MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQRIRKVLNREM 60
Query: 61 LISVALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEEN 120
LISVALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEEN
Sbjct: 61 LISVALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEEN 120
Query: 121 LLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIR 180
LLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIR
Sbjct: 121 LLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIR 180
Query: 181 YKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYI 240
YKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYI
Sbjct: 181 YKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYI 240
Query: 241 IRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFM 300
IRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFM
Sbjct: 241 IRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFM 300
Query: 301 PVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYSSTSTYI 360
PVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYSSTSTYI
Sbjct: 301 PVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYSSTSTYI 360
Query: 361 AQDPRVYKQFRNPSGPVVDLPTTAQVEPSVTYTSLGQETEEEPHVRVA 408
AQDPRVYKQFRNPSGPVVDLPTTAQVEPSVTYTSLGQETEEEPHVRVA
Sbjct: 361 AQDPRVYKQFRNPSGPVVDLPTTAQVEPSVTYTSLGQETEEEPHVRVA 408
>gi|31542943 solute carrier family 35, member F2 [Homo sapiens]
Length = 374
Score = 414 bits (1064), Expect = e-116
Identities = 197/323 (60%), Positives = 256/323 (79%), Gaps = 1/323 (0%)
Query: 41 SASSRAGVRQRIR-KVLNREMLISVALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFL 99
+A+ + + +RI+ K+ +L ++ALGQ+LSL ICG +TS+YL+E + NTP+ QSF+
Sbjct: 19 AAAEFSSLLRRIKGKLFTWNILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFI 78
Query: 100 NYILLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQ 159
NY LLFL+YT LA R G +NLL IL+R+WWKY++LGL D+EANY++V+AYQYTTLTS+Q
Sbjct: 79 NYCLLFLIYTVMLAFRSGSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQ 138
Query: 160 LLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVG 219
LLDCF IPV++ LSWF L RY+ +HFI + VC+LG+G MVGAD+L GR +G + L+G
Sbjct: 139 LLDCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIG 198
Query: 220 DLLVLGGATLYGISNVWEEYIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWD 279
D+LVL GA+LY ISNV EEYI++ LSR EFLGM+GLFG SGIQL I+E+K++ + WD
Sbjct: 199 DILVLLGASLYAISNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWD 258
Query: 280 WQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLY 339
W+I LL+V F+ CMF LYSFMP+VIK TSATSVNL +LTADLYSLF GLFLF YKFSGLY
Sbjct: 259 WKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFVGLFLFGYKFSGLY 318
Query: 340 LLSFFTILIGLVLYSSTSTYIAQ 362
+LSF I++G +LY ST T A+
Sbjct: 319 ILSFTVIMVGFILYCSTPTRTAE 341
>gi|27735127 solute carrier family 35, member F3 [Homo sapiens]
Length = 490
Score = 47.8 bits (112), Expect = 2e-05
Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 21/226 (9%)
Query: 136 GLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILG 195
G++ NYL + A + T + +L C V LLSW L R+ V + ++ I G
Sbjct: 227 GVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAG 286
Query: 196 MGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYIIRTLSRVE---FLGM 252
+ M AD G + ++G LV+ A++ + V + ++ + E FL +
Sbjct: 287 IVMMTYAD-------GFHSHSVIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSI 339
Query: 253 IGLFGAFFSGIQLAIMEHKELL------KVPWDWQIGLLYVGFSACMFGLYSFMPVVIKK 306
+G+F F I+ ++ +PW G L GFS + + I
Sbjct: 340 LGVFNILFITCIPIILYFTKVEYWSSFDDIPW----GNL-CGFSVLLLTFNIVLNFGIAV 394
Query: 307 TSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVL 352
T T ++L ++ + + + F+G+ +++ I +G +L
Sbjct: 395 TYPTLMSLGIVLSIPVNAVIDHYTSQIVFNGVRVIAIIIIGLGFLL 440
>gi|31542711 ANT2-binding protein [Homo sapiens]
Length = 371
Score = 45.4 bits (106), Expect = 9e-05
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 137 LIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGM 196
L D+ L+ A T+ +S Q+L VI L S FL R ++GI+ I G+
Sbjct: 96 LCDMTGTSLMYVALNMTSASSFQMLRGAVIIFTGLFSVAFLGRRLVLSQWLGILATIAGL 155
Query: 197 GCMVGADVLVGRH--QGAGENKLVGDLLVLGGATLYGISNVWEEYII--RTLSRVEFLGM 252
+VG L+ +H Q + GDLL++ + I V EE + + + +G
Sbjct: 156 -VVVGLADLLSKHDSQHKLSEVITGDLLIIMAQIIVAIQMVLEEKFVYKHNVHPLRAVGT 214
Query: 253 IGLFGAFFSGIQLAIMEH----------KELLKVPWD--WQIG---LLYVGF--SACMFG 295
GLFG + L M + + L+ D Q+G L+ V +
Sbjct: 215 EGLFGFVILSLLLVPMYYIPAGSFSGNPRGTLEDALDAFCQVGQQPLIAVALLGNISSIA 274
Query: 296 LYSFMPV-VIKKTSATS--VNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVL 352
++F + V K+ SAT+ V SL T +++L L L F L +L F +LIG L
Sbjct: 275 FFNFAGISVTKELSATTRMVLDSLRTVVIWAL--SLALGWEAFHALQILGFLILLIGTAL 332
Query: 353 YS 354
Y+
Sbjct: 333 YN 334
>gi|122937311 solute carrier family 35, member F4 [Homo sapiens]
Length = 521
Score = 45.1 bits (105), Expect = 1e-04
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 117 GEENL-LAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWF 175
GE+ L L + +R + IL + NYL + A + T T + L C V LLSW
Sbjct: 239 GEDGLTLKLFLKRTAPFSILWTL---TNYLYLLALKKLTATDVSALFCCNKAFVFLLSWI 295
Query: 176 FLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNV 235
L R+ V + ++ I G+ M AD + ++G +G A+ + V
Sbjct: 296 VLKDRFMGVRIVAAIMAITGIVMMAYAD-------NFHADSIIGVAFAVGSASTSALYKV 348
Query: 236 WEEYIIRTLS---RVEFLGMIGLFGAFFSGIQLAIM-----EH-KELLKVPWDWQIGL-- 284
+ + + + F+ +G F F I+ EH +PW G+
Sbjct: 349 LFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAG 408
Query: 285 LYVGFSACM-FGLYSFMPVVIKKTSATSV 312
L++ F+ + G+ P++I + SV
Sbjct: 409 LWLAFNILVNVGVVLTYPILISIGTVLSV 437
>gi|27881499 solute carrier family 35, member C2 isoform a [Homo
sapiens]
Length = 365
Score = 43.1 bits (100), Expect = 4e-04
Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 58/323 (17%)
Query: 64 VALGQVLSLLICGIGLT--SKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENL 121
+ LG VL IG+T +K+L++ FH P+F + L+ ++FL + A+ Q +
Sbjct: 16 LTLGLVLLYYCFSIGITFYNKWLTKSFHF--PLFMTMLHLAVIFLFSALSRALVQCSSHR 73
Query: 122 LAILRRRWWKYMI------------LGLIDLEANYLVVKAYQYTTLTSIQLLDCF----- 164
++ W Y+ +GL + Y+ V Y T +++ + F
Sbjct: 74 ARVVLS-WADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFK 132
Query: 165 -------VIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKL 217
++ VV+L++ + YK+ F + G ++GA + G +
Sbjct: 133 LEELRAALVLVVLLIAGGLFMFTYKSTQFN-----VEGFALVLGASFIGGIRWTLTQ--- 184
Query: 218 VGDLLVLGGATLYGISNVWEEYIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEH------- 270
++L A L G+ N + L + FLG+ LF A F G+ L+ E
Sbjct: 185 ----MLLQKAEL-GLQNPIDTMF--HLQPLMFLGLFPLF-AVFEGLHLSTSEKIFRFQDT 236
Query: 271 KELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFL 330
LL+V +G L++G FGL +++ +TS+ +++++ + ++ +L L
Sbjct: 237 GLLLRV-----LGSLFLG-GILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHL 290
Query: 331 FHYKFSGLYLLSFFTILIGLVLY 353
+ S L L F L G+ L+
Sbjct: 291 LGDQISLLNWLGFALCLSGISLH 313
>gi|21314776 solute carrier family 35, member C2 isoform a [Homo
sapiens]
Length = 365
Score = 43.1 bits (100), Expect = 4e-04
Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 58/323 (17%)
Query: 64 VALGQVLSLLICGIGLT--SKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENL 121
+ LG VL IG+T +K+L++ FH P+F + L+ ++FL + A+ Q +
Sbjct: 16 LTLGLVLLYYCFSIGITFYNKWLTKSFHF--PLFMTMLHLAVIFLFSALSRALVQCSSHR 73
Query: 122 LAILRRRWWKYMI------------LGLIDLEANYLVVKAYQYTTLTSIQLLDCF----- 164
++ W Y+ +GL + Y+ V Y T +++ + F
Sbjct: 74 ARVVLS-WADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFK 132
Query: 165 -------VIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKL 217
++ VV+L++ + YK+ F + G ++GA + G +
Sbjct: 133 LEELRAALVLVVLLIAGGLFMFTYKSTQFN-----VEGFALVLGASFIGGIRWTLTQ--- 184
Query: 218 VGDLLVLGGATLYGISNVWEEYIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEH------- 270
++L A L G+ N + L + FLG+ LF A F G+ L+ E
Sbjct: 185 ----MLLQKAEL-GLQNPIDTMF--HLQPLMFLGLFPLF-AVFEGLHLSTSEKIFRFQDT 236
Query: 271 KELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFL 330
LL+V +G L++G FGL +++ +TS+ +++++ + ++ +L L
Sbjct: 237 GLLLRV-----LGSLFLG-GILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHL 290
Query: 331 FHYKFSGLYLLSFFTILIGLVLY 353
+ S L L F L G+ L+
Sbjct: 291 LGDQISLLNWLGFALCLSGISLH 313
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 36.6 bits (83), Expect = 0.042
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 3 PPEQPQQQLQPPSPAPPNHVVTTIENLP-----AEGSGGGGSLSASSRAGVRQRIRKVLN 57
PP PQQ PP+P P H +N G GGGG S+SS + +
Sbjct: 36 PPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGGGGGGKSSSSSSASAAAAAAAAS 95
Query: 58 REMLISVALGQVLSLL 73
S LG+ L+ L
Sbjct: 96 SSASCSRRLGRALNFL 111
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 35.8 bits (81), Expect = 0.072
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 3 PPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQRIRKVLN 57
PP PQ Q QPP P P P G G GG+ A + AG Q + ++N
Sbjct: 15 PPPPPQPQPQPPPPPPG----------PGAGPGAGGAGGAGAGAGDPQLVAMIVN 59
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 907 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 966
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 967 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1021
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1022 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1050
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 907 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 966
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 967 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1021
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1022 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1050
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 907 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 966
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 967 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1021
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1022 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1050
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 907 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 966
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 967 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1021
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1022 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1050
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 1057 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 1116
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 1117 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1171
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1172 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1200
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 992 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 1051
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 1052 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1106
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1107 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1135
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGF-----SACMF 294
++ L VE GM+GL G S + + I+ + V + + L ++ +
Sbjct: 1058 MVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVL 1117
Query: 295 GLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYS 354
L V+ +T + + +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 1118 ALEHMFAPVLDGAVSTLLGVLMLAGSEFD-----FIVRYFFAVLAILTILGVLNGLVLLP 1172
Query: 355 STSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEP 388
++ P V +P+ + LPT + P
Sbjct: 1173 VLLSFFGPYPEV-----SPANGLNRLPTPSPEPP 1201
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 33.1 bits (74), Expect = 0.47
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 3 PPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGS 39
PPE PP+P P H T + P+ SG GGS
Sbjct: 1405 PPEGDTDPSTPPAPPTPPHPATPGDGFPSNDSGFGGS 1441
>gi|156564359 hypothetical protein LOC113278 [Homo sapiens]
Length = 469
Score = 32.3 bits (72), Expect = 0.79
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 249 FLGMIGLFGAFFSG--IQLAIMEHKELLKVPWDWQIGLL--YVGFSACMFGLYSFMPVVI 304
FLG++ + G F G + +A+M LL+ W ++ ++ +V FS C+ + + VV+
Sbjct: 362 FLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVL 421
Query: 305 KKTSATSVNLSLLTADLYSLFCGLFLF 331
+ S +++ L SL L +F
Sbjct: 422 RDLSRSALLWCGAAVQLGSLLGALLMF 448
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 32.0 bits (71), Expect = 1.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 3 PPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQR 51
PP QPQ+Q PP P P +G G S SA++ A V +R
Sbjct: 41 PPPQPQRQQHPPPPPR--------RTRPEDGGPGAASTSAAAMATVGER 81
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 32.0 bits (71), Expect = 1.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 3 PPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQR 51
PP QPQ+Q PP P P +G G S SA++ A V +R
Sbjct: 41 PPPQPQRQQHPPPPPR--------RTRPEDGGPGAASTSAAAMATVGER 81
>gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 1.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 1 MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGG-GGSLSASSRAGVRQRIR 53
+ PP P Q+ P +P P +H+ T E G G S+ SS+ V R R
Sbjct: 64 LTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRAR 117
>gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo
sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 1.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 1 MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGG-GGSLSASSRAGVRQRIR 53
+ PP P Q+ P +P P +H+ T E G G S+ SS+ V R R
Sbjct: 64 LTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRAR 117
>gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo
sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 1.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 1 MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGG-GGSLSASSRAGVRQRIR 53
+ PP P Q+ P +P P +H+ T E G G S+ SS+ V R R
Sbjct: 64 LTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRAR 117
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 31.6 bits (70), Expect = 1.4
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 3 PPEQPQQQLQPPSPAPP 19
PP PQQQ QPP P PP
Sbjct: 766 PPPPPQQQQQPPPPPPP 782
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 3 PPEQPQQQLQP---------PSPAPPNHVVTTIENLPAEGSGGGG 38
PP PQQQ P P PAPP H E LP E + GG
Sbjct: 27 PPAPPQQQPPPPPPPAPPPGPGPAPPQH-PPRAEALPPEAADEGG 70
>gi|52145305 patched 2 [Homo sapiens]
Length = 1203
Score = 30.8 bits (68), Expect = 2.3
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 240 IIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYV------GFSACM 293
++ + VE G++G G S I + I+ + V + + L ++ A
Sbjct: 994 LVLAMMTVELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTTQGSRNLRAAH 1053
Query: 294 FGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLY 353
++F PV S T + L +L + F+ Y F+ L +L+ +L GLVL
Sbjct: 1054 ALEHTFAPVTDGAIS-TLLGLLMLAGSHFD-----FIVRYFFAALTVLTLLGLLHGLVLL 1107
Query: 354 SSTSTYIAQDPRVYKQFR 371
+ + P V + ++
Sbjct: 1108 PVLLSILGPPPEVIQMYK 1125
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 30.8 bits (68), Expect = 2.3
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 3 PPEQPQQQLQPPSPAPPNHVVTTIENLPAE---GSGGGGSLSASSRAG 47
PP P +L+ SP+PP + LP G+GGGG + G
Sbjct: 65 PPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGG 112
>gi|13128980 proline rich 14 [Homo sapiens]
Length = 585
Score = 30.8 bits (68), Expect = 2.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 7 PQQQLQPPSPAPPNHVVTTIENLPAEGSGGG-GSLSASSRAGVRQ 50
P + QPP P+PP + I AE SG G+ S S R +RQ
Sbjct: 267 PNKTPQPPPPSPPMKLELKIAISEAEQSGAAEGTASVSPRPPIRQ 311
>gi|21687252 zinc finger protein 296 [Homo sapiens]
Length = 475
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 2 IPPEQP------QQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQ 50
+PP+ P Q+Q P P H LP G G G A++ AGV++
Sbjct: 284 VPPQSPLMADTSQEQASAAPPEPAVHAAAPTSTLPCSGGEGAG---AAATAGVQE 335
>gi|5453666 G protein-coupled receptor 19 [Homo sapiens]
Length = 415
Score = 30.4 bits (67), Expect = 3.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 139 DLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRY 181
D NY + +++ T T I L FVIP V+++ ++ +I+Y
Sbjct: 207 DSHCNYFLPSSWEGTAYTVIHFLVGFVIPSVLIILFYQKVIKY 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,015,531
Number of Sequences: 37866
Number of extensions: 666396
Number of successful extensions: 5293
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 5083
Number of HSP's gapped (non-prelim): 218
length of query: 408
length of database: 18,247,518
effective HSP length: 105
effective length of query: 303
effective length of database: 14,271,588
effective search space: 4324291164
effective search space used: 4324291164
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.