Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC35F4 Sequence: fasta or formatted (521aa) NCBI GI: 122937311
Description:

solute carrier family 35, member F4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         37           2
 C cysteine            2.5         13           2
 D aspartate           3.1         16           2
 E glutamate           4.0         21           2
 F phenylalanine       6.1         32           2
 G glycine             6.7         35           1
 H histidine           2.5         13           1
 I isoleucine          7.1         37           3
 K lysine              5.2         27           2
 L leucine            11.9         62           3
 M methionine          2.5         13           2
 N asparagine          4.2         22           1
 P proline             3.1         16           1
 Q glutamine           2.5         13           1
 R arginine            4.0         21           1
 S serine              9.4         49           3
 T threonine           6.3         33           2
 V valine              7.3         38           2
 W tryptophan          2.3         12           1
 Y tyrosine            2.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member F4 
SLC35F3               0.417   solute carrier family 35, member F3 
SLC35F5               0.031   solute carrier family 35, member F5 
SLC35F2               0.020   solute carrier family 35, member F2 
SLC35F1               0.020   solute carrier family 35, member F1 
TMEM20                0.012   transmembrane protein 20 isoform 1 
TMEM20                0.012   transmembrane protein 20 isoform 2 
SLC35C2               0.012   solute carrier family 35, member C2 isoform a 
SLC35C2               0.012   solute carrier family 35, member C2 isoform a 
GPR149                0.009   G protein-coupled receptor 149 
LPAR4                 0.007   lysophosphatidic acid receptor 4 
SLC39A14              0.006   solute carrier family 39 (zinc transporter), member...
MTMR9                 0.005   myotubularin related protein 9 
ZRANB2                0.005   zinc finger protein 265 isoform 1 
ZRANB2                0.005   zinc finger protein 265 isoform 2 
C14orf149             0.005   proline racemase-like 
PTPLA                 0.004   protein tyrosine phosphatase-like, member A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press