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Search of human proteins with 18860916
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
(950 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens] 1985 0.0
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens] 473 e-133
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens] 473 e-133
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 38 0.039
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 38 0.039
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 37 0.11
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 37 0.11
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 36 0.15
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 35 0.25
gi|4506509 regulator of G-protein signalling 12 isoform 2 [Homo ... 35 0.43
gi|38327601 regulator of G-protein signalling 12 isoform 1 [Homo... 35 0.43
gi|38327599 regulator of G-protein signalling 12 isoform 3 [Homo... 35 0.43
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 34 0.57
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 34 0.57
gi|193788722 hypothetical protein LOC51507 [Homo sapiens] 34 0.57
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 34 0.57
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 34 0.57
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 34 0.74
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 33 0.97
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 33 0.97
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 33 0.97
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 33 0.97
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 33 0.97
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 33 0.97
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 33 0.97
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 33 1.3
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom... 33 1.7
gi|205277423 immunoglobulin superfamily, member 9 isoform b [Hom... 33 1.7
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 32 2.2
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 32 2.2
>gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
Length = 950
Score = 1985 bits (5142), Expect = 0.0
Identities = 950/950 (100%), Positives = 950/950 (100%)
Query: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE 300
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE 300
Query: 301 FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAI 360
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAI
Sbjct: 301 FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAI 360
Query: 361 DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE 420
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
Sbjct: 361 DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE 420
Query: 421 KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSF 480
KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSF
Sbjct: 421 KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSF 480
Query: 481 TSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ 540
TSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
Sbjct: 481 TSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ 540
Query: 541 SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG 600
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
Sbjct: 541 SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG 600
Query: 601 VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA 660
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
Sbjct: 601 VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA 660
Query: 661 ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVEVPPELCHGIQG 720
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVEVPPELCHGIQG
Sbjct: 661 ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVEVPPELCHGIQG 720
Query: 721 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAV 780
KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAV
Sbjct: 721 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAV 780
Query: 781 LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGIYSNAAPPPVT 840
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGIYSNAAPPPVT
Sbjct: 781 LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGIYSNAAPPPVT 840
Query: 841 YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ 900
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ
Sbjct: 841 YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ 900
Query: 901 NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYNWN 950
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYNWN
Sbjct: 901 NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYNWN 950
>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
Length = 1693
Score = 473 bits (1216), Expect = e-133
Identities = 264/683 (38%), Positives = 376/683 (55%), Gaps = 96/683 (14%)
Query: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 178
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 179 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 238
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 239 LGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
LGL +HE +F+++REE + K +C E
Sbjct: 212 LGLTSHEAHFSLLREEVRFGGKKTQRVCAP----------------------------EE 243
Query: 299 GEFIFLRLNVLREYLERELTM--ASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIR 356
F L L+++REY++ E ++ + F +D+ER IDDW+ M F VGNDF+PHLP L I
Sbjct: 244 TTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHIN 303
Query: 357 ENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRR 416
+A+ L Y ++ + GGY+ ESG++NL R + ++ + + + F + D F
Sbjct: 304 HDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFES 363
Query: 417 RQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSS--PSI 474
+ K L ++ A N ++ +++ Q NS ++
Sbjct: 364 KVGNK--------------------YLNEAAGVAAEEARNYKEKK-KLKGQENSLCWTAL 402
Query: 475 SPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKF 534
N G + ++ + E E +D +K+ YY K VD + F
Sbjct: 403 DKNE-----------GEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDF 451
Query: 535 RRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKP 594
YV+ + W+L YYY G SW WYYP+HYAPF SD I+ + FE G KPFKP
Sbjct: 452 LADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELG-KPFKP 510
Query: 595 LEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVD 654
EQL+ V PAAS N LP ++ LM++ DS II++YP DF DLNGK+ W+ V L+PF+D
Sbjct: 511 FEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFID 570
Query: 655 ERRLRAALEEVYPDLTPEETRRN 677
E+RL A+E L EE +RN
Sbjct: 571 EKRLLEAMETCNHSLKKEERKRN 593
>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
Length = 1706
Score = 473 bits (1216), Expect = e-133
Identities = 264/683 (38%), Positives = 376/683 (55%), Gaps = 96/683 (14%)
Query: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 178
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 179 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 238
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 239 LGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
LGL +HE +F+++REE + K +C E
Sbjct: 212 LGLTSHEAHFSLLREEVRFGGKKTQRVCAP----------------------------EE 243
Query: 299 GEFIFLRLNVLREYLERELTM--ASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIR 356
F L L+++REY++ E ++ + F +D+ER IDDW+ M F VGNDF+PHLP L I
Sbjct: 244 TTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHIN 303
Query: 357 ENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRR 416
+A+ L Y ++ + GGY+ ESG++NL R + ++ + + + F + D F
Sbjct: 304 HDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFES 363
Query: 417 RQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSS--PSI 474
+ K L ++ A N ++ +++ Q NS ++
Sbjct: 364 KVGNK--------------------YLNEAAGVAAEEARNYKEKK-KLKGQENSLCWTAL 402
Query: 475 SPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKF 534
N G + ++ + E E +D +K+ YY K VD + F
Sbjct: 403 DKNE-----------GEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDF 451
Query: 535 RRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKP 594
YV+ + W+L YYY G SW WYYP+HYAPF SD I+ + FE G KPFKP
Sbjct: 452 LADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELG-KPFKP 510
Query: 595 LEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVD 654
EQL+ V PAAS N LP ++ LM++ DS II++YP DF DLNGK+ W+ V L+PF+D
Sbjct: 511 FEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFID 570
Query: 655 ERRLRAALEEVYPDLTPEETRRN 677
E+RL A+E L EE +RN
Sbjct: 571 EKRLLEAMETCNHSLKKEERKRN 593
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 38.1 bits (87), Expect = 0.039
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 405 KKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILT---PHALGSRNSPGSQVASNPRQAA 461
++R++DE RRR++ + +R ++ + SG+ + P SQ S Q+
Sbjct: 37 RRRREDEGRRRRRRRSRERRSDSEEERWQRSGMRSRSPPRPKWHSRDGSSQSDSGEEQSR 96
Query: 462 YEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYY 521
+ + + S SP++S +S SP + A + ++ +RL E +Q
Sbjct: 97 GQWARRRRRARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSLQERLRLREERKQQEEL 156
Query: 522 KNKFDVDAADEKFRRKVVQ 540
F + +EK R++ +
Sbjct: 157 MKAF--ETPEEKRARRLAK 173
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 38.1 bits (87), Expect = 0.039
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 405 KKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILT---PHALGSRNSPGSQVASNPRQAA 461
++R++DE RRR++ + +R ++ + SG+ + P SQ S Q+
Sbjct: 37 RRRREDEGRRRRRRRSRERRSDSEEERWQRSGMRSRSPPRPKWHSRDGSSQSDSGEEQSR 96
Query: 462 YEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYY 521
+ + + S SP++S +S SP + A + ++ +RL E +Q
Sbjct: 97 GQWARRRRRARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSLQERLRLREERKQQEEL 156
Query: 522 KNKFDVDAADEKFRRKVVQ 540
F + +EK R++ +
Sbjct: 157 MKAF--ETPEEKRARRLAK 173
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 836 PPPVTYQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNR 895
P P + + P+ +Q P+L QD WR PPP + F GV EP P +
Sbjct: 420 PGPPEFPQHTPGPVPNSFSQPPRLPL----QDQWRAPPPPQDRDPFFLGVSGEPRFPSHL 475
Query: 896 MLQTQNAAFQPNQYQMLAGPGGYP-----------PRRDDRGGRQGYPREGRKYPLPPPS 944
L+ ++ P +L P P + +G + +PRE P P
Sbjct: 476 FLEQRSPPPPPPPPTLLNSSHPVPTQSPLPFTQPGPAFNQQGQQPVFPRERPVRPALQPP 535
Query: 945 G 945
G
Sbjct: 536 G 536
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 388 RVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRN 447
R + M VG + S + R S +R+K+ RK R+ A T G A G+
Sbjct: 119 RARGAMAHVGSRKRSRSRSRSRGRGS-EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEA 177
Query: 448 SPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRK 495
SP + +Q A ++SS S S ++S +S S S RK
Sbjct: 178 SPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 225
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 36.2 bits (82), Expect = 0.15
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 396 VGEVEDSIFKKRKDDEDSFRRRQKEK-RKRMKRDQPAFT---PSGILTPHALGSRNSPGS 451
+G ++D + +K ED + R K R + K D P T P +P R++PGS
Sbjct: 1763 IGSIKDKVKALQKRVEDEQKGRSKLPIRVKGKEDVPKKTTHRPHPAASPSLKSERHAPGS 1822
Query: 452 QVASNPRQAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDS 501
R + + P +SP++ SP +R + S S
Sbjct: 1823 PSPKTERHSTLSSSAKTERHPPVSPSSKTEKHSPVSPSAKTERHSPASSS 1872
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 35.4 bits (80), Expect = 0.25
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 822 MPRGSGTGIYSNAAPPPVTYQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQ-- 879
MP+G G P + Q N ++ GQ QIP RP +GPP + Q
Sbjct: 217 MPQGGGQHYQGQQPPMGMMGQVNQGNHMM-GQRQIPPY----RPPQ--QGPPQQYSGQED 269
Query: 880 ----RFDRGVGAEPLLPWNRMLQTQNAAFQPNQYQMLAGPG---GYPPRRDDRGGRQGYP 932
++ G G P N+ + Q GP GYPP++ G+QGYP
Sbjct: 270 YYGDQYSHG-GQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYP 328
Query: 933 REGRKY 938
+ + Y
Sbjct: 329 GQQQGY 334
>gi|4506509 regulator of G-protein signalling 12 isoform 2 [Homo
sapiens]
Length = 1376
Score = 34.7 bits (78), Expect = 0.43
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 384 VNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHAL 443
+NL + + + + + R DD+ R++ R P T + TP A+
Sbjct: 1182 INLDEAEEFFELISKAQSN----RADDQRGLLRKEDLVLPEFLRLPPGSTELTLPTPAAV 1237
Query: 444 G------SRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAE 497
S G + AS P + +E +++ SPS SP ++ + G P G +
Sbjct: 1238 AKGFSKRSATGNGRESASQPGEQ-WEPVQESSDSPSTSPGSASSPPGPP----GTTPPGQ 1292
Query: 498 DSDSEP--EPEDNVRLWEAGWKQRYYKNKFDVDA 529
S S P P+ V L + G Q + + +V+A
Sbjct: 1293 KSPSGPFCTPQSPVSLAQEGTAQIWKRQSQEVEA 1326
>gi|38327601 regulator of G-protein signalling 12 isoform 1 [Homo
sapiens]
Length = 1447
Score = 34.7 bits (78), Expect = 0.43
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 384 VNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHAL 443
+NL + + + + + R DD+ R++ R P T + TP A+
Sbjct: 1182 INLDEAEEFFELISKAQSN----RADDQRGLLRKEDLVLPEFLRLPPGSTELTLPTPAAV 1237
Query: 444 G------SRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAE 497
S G + AS P + +E +++ SPS SP ++ + G P G +
Sbjct: 1238 AKGFSKRSATGNGRESASQPGEQ-WEPVQESSDSPSTSPGSASSPPGPP----GTTPPGQ 1292
Query: 498 DSDSEP--EPEDNVRLWEAGWKQRYYKNKFDVDA 529
S S P P+ V L + G Q + + +V+A
Sbjct: 1293 KSPSGPFCTPQSPVSLAQEGTAQIWKRQSQEVEA 1326
>gi|38327599 regulator of G-protein signalling 12 isoform 3 [Homo
sapiens]
Length = 799
Score = 34.7 bits (78), Expect = 0.43
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 384 VNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHAL 443
+NL + + + + + R DD+ R++ R P T + TP A+
Sbjct: 534 INLDEAEEFFELISKAQSN----RADDQRGLLRKEDLVLPEFLRLPPGSTELTLPTPAAV 589
Query: 444 G------SRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAE 497
S G + AS P + +E +++ SPS SP ++ + G P G +
Sbjct: 590 AKGFSKRSATGNGRESASQPGEQ-WEPVQESSDSPSTSPGSASSPPGPP----GTTPPGQ 644
Query: 498 DSDSEP--EPEDNVRLWEAGWKQRYYKNKFDVDA 529
S S P P+ V L + G Q + + +V+A
Sbjct: 645 KSPSGPFCTPQSPVSLAQEGTAQIWKRQSQEVEA 678
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.57
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQ 467
K+ + R R K +++R + T S + + GS S GS S+ A+ +
Sbjct: 50 KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS----SR 105
Query: 468 NNSSPSISPNTSFTSDGSPSPLGGI--KRKAEDSDSEPEPED 507
+ SS + ++S +S GSPSP R+ S S+P D
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.57
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQ 467
K+ + R R K +++R + T S + + GS S GS S+ A+ +
Sbjct: 50 KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS----SR 105
Query: 468 NNSSPSISPNTSFTSDGSPSPLGGI--KRKAEDSDSEPEPED 507
+ SS + ++S +S GSPSP R+ S S+P D
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
>gi|193788722 hypothetical protein LOC51507 [Homo sapiens]
Length = 306
Score = 34.3 bits (77), Expect = 0.57
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP---SGILTPHALGSRNSPGSQVASNPRQAAYEM 464
K+D D + R +E+R R K ++ P + P P P +A+ +
Sbjct: 176 KEDVDVLKTRMEERRLRAKLEKKTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDS 235
Query: 465 RMQ--NNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSD 500
R + N + S + N S + P G KR DS+
Sbjct: 236 REKKTNLAPKSTAMNESSSGKAGKPPCGATKRSIADSE 273
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.57
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQ 467
K+ + R R K +++R + T S + + GS S GS S+ A+ +
Sbjct: 50 KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS----SR 105
Query: 468 NNSSPSISPNTSFTSDGSPSPLGGI--KRKAEDSDSEPEPED 507
+ SS + ++S +S GSPSP R+ S S+P D
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.57
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQ 467
K+ + R R K +++R + T S + + GS S GS S+ A+ +
Sbjct: 50 KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS----SR 105
Query: 468 NNSSPSISPNTSFTSDGSPSPLGGI--KRKAEDSDSEPEPED 507
+ SS + ++S +S GSPSP R+ S S+P D
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 33.9 bits (76), Expect = 0.74
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 417 RQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPG---SQVASNPRQAAYEMRMQNNSSPS 473
R+ + +K Q A +P L P A S+ PG +Q+ + P A Y + + PS
Sbjct: 988 RRNNREATLKMAQLADSPRAPLQPLAK-SKGGPGGVVTQLPARPPPALYTCSQCSGTGPS 1046
Query: 474 ISPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVR 510
P S S SPL ++ S S P D+ R
Sbjct: 1047 SQPGASLAHTASASPLA-----SQSSYSLLSPPDSAR 1078
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 400 EDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVAS---- 455
EDS + + D + + + +K+ Q P+ P A G+ ++PG V +
Sbjct: 683 EDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA 742
Query: 456 ---NPRQAAYEMRMQNNSS---------PSISPNTSFTSDGSPSPLGGIKRKAEDSDSEP 503
+P + +R NS+ PS+ + + P E+SDSE
Sbjct: 743 KQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEE 802
Query: 504 EPEDNVRLWEAG 515
E E ++ +G
Sbjct: 803 EAETLAQVKPSG 814
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 400 EDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVAS---- 455
EDS + + D + + + +K+ Q P+ P A G+ ++PG V +
Sbjct: 760 EDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA 819
Query: 456 ---NPRQAAYEMRMQNNSS---------PSISPNTSFTSDGSPSPLGGIKRKAEDSDSEP 503
+P + +R NS+ PS+ + + P E+SDSE
Sbjct: 820 KQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEE 879
Query: 504 EPEDNVRLWEAG 515
E E ++ +G
Sbjct: 880 EAETLAQVKPSG 891
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 400 EDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVAS---- 455
EDS + + D + + + +K+ Q P+ P A G+ ++PG V +
Sbjct: 760 EDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA 819
Query: 456 ---NPRQAAYEMRMQNNSS---------PSISPNTSFTSDGSPSPLGGIKRKAEDSDSEP 503
+P + +R NS+ PS+ + + P E+SDSE
Sbjct: 820 KQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEE 879
Query: 504 EPEDNVRLWEAG 515
E E ++ +G
Sbjct: 880 EAETLAQVKPSG 891
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 400 EDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVAS---- 455
EDS + + D + + + +K+ Q P+ P A G+ ++PG V +
Sbjct: 683 EDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA 742
Query: 456 ---NPRQAAYEMRMQNNSS---------PSISPNTSFTSDGSPSPLGGIKRKAEDSDSEP 503
+P + +R NS+ PS+ + + P E+SDSE
Sbjct: 743 KQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEE 802
Query: 504 EPEDNVRLWEAG 515
E E ++ +G
Sbjct: 803 EAETLAQVKPSG 814
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 400 EDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVAS---- 455
EDS + + D + + + +K+ Q P+ P A G+ ++PG V +
Sbjct: 760 EDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA 819
Query: 456 ---NPRQAAYEMRMQNNSS---------PSISPNTSFTSDGSPSPLGGIKRKAEDSDSEP 503
+P + +R NS+ PS+ + + P E+SDSE
Sbjct: 820 KQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEE 879
Query: 504 EPEDNVRLWEAG 515
E E ++ +G
Sbjct: 880 EAETLAQVKPSG 891
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 400 EDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVAS---- 455
EDS + + D + + + +K+ Q P+ P A G+ ++PG V +
Sbjct: 760 EDSESSEEESDSEEAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA 819
Query: 456 ---NPRQAAYEMRMQNNSS---------PSISPNTSFTSDGSPSPLGGIKRKAEDSDSEP 503
+P + +R NS+ PS+ + + P E+SDSE
Sbjct: 820 KQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEE 879
Query: 504 EPEDNVRLWEAG 515
E E ++ +G
Sbjct: 880 EAETLAQVKPSG 891
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 33.5 bits (75), Expect = 0.97
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 22 VEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPED---KPAPKNEDEMM 78
VE+ G P DA + V L D G+ PC + +P E E +
Sbjct: 817 VEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDV 876
Query: 79 VAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVR 136
A ++ R+ + + ++L M D + PR ++ + +R R EG E A EK+R R
Sbjct: 877 TASAQHALRMLAFRQTHKVLGM--DLLPPRHRLGARFRKRQRGPGEGEEGAGEKKRGR 932
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 33.1 bits (74), Expect = 1.3
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 857 PKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQNAAFQPNQYQMLAGPG 916
P L P D +G + R + ++P LP +LQ+ QP AGPG
Sbjct: 734 PALRGTRAPSDQGKG------KARPPEPLSSKPPLPRKPLLQSFTLPHQPAPPD--AGPG 785
Query: 917 GYPPRRDDRGGRQGYPREGRKYPLPP 942
PR++ R + R G + LPP
Sbjct: 786 EREPRKEPRTAEKRPLRRGAEKSLPP 811
>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
sapiens]
Length = 1179
Score = 32.7 bits (73), Expect = 1.7
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 415 RRRQKEKRKRMKRDQP-AFTPSG-ILTPHALGSRNSPGS----QVASNPRQAAYEMRMQN 468
RR + +RKR+++D P F+P+G P ALGS SP S ++ +P + + +
Sbjct: 763 RRAARRRRKRLRQDPPLIFSPTGKSAAPSALGS-GSPDSVAKLKLQGSPVPSLRQSLLWG 821
Query: 469 NSSPSISPNTSFTSDGSPSPLGGIKR 494
+ + + SP+ S P PL I R
Sbjct: 822 DPAGTPSPHPDPPSSRGPLPLEPICR 847
>gi|205277423 immunoglobulin superfamily, member 9 isoform b [Homo
sapiens]
Length = 1163
Score = 32.7 bits (73), Expect = 1.7
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 415 RRRQKEKRKRMKRDQP-AFTPSG-ILTPHALGSRNSPGS----QVASNPRQAAYEMRMQN 468
RR + +RKR+++D P F+P+G P ALGS SP S ++ +P + + +
Sbjct: 747 RRAARRRRKRLRQDPPLIFSPTGKSAAPSALGS-GSPDSVAKLKLQGSPVPSLRQSLLWG 805
Query: 469 NSSPSISPNTSFTSDGSPSPLGGIKR 494
+ + + SP+ S P PL I R
Sbjct: 806 DPAGTPSPHPDPPSSRGPLPLEPICR 831
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 32.3 bits (72), Expect = 2.2
Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 31/227 (13%)
Query: 406 KRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMR 465
+RKD+ + + + E+ RM+ PA PS + P SQ+ S+ +
Sbjct: 389 ERKDEPKTEQTEKAEEETRMENSLPAKVPS--RGDEMVADVQQPLSQIPSDTASPLLIL- 445
Query: 466 MQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVR-LWEAGWKQRYYKNK 524
P PN S T +P+ G S +EP+ E+ ++ L + K Y
Sbjct: 446 ------PPPVPNPSPTLRPVETPVVGAPGMGSVS-TEPDDEEGLKHLEQQAEKMVAYLQD 498
Query: 525 FDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY---------PFHYAPFASDF 575
+D DE+ K+ + +G+ L + A KWYY PF+ A F
Sbjct: 499 SALD--DERLASKLQEHRAKGVSIPLMHE----AMQKWYYKDPQGEIQGPFNNQEMAEWF 552
Query: 576 E-GIADMPSDFEKG-TKPFKPLEQLM---GVFPAASGNFLPPSWRKL 617
+ G M ++ + F+PL +M G P + G PP +L
Sbjct: 553 QAGYFTMSLLVKRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGEL 599
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 32.3 bits (72), Expect = 2.2
Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 31/227 (13%)
Query: 406 KRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMR 465
+RKD+ + + + E+ RM+ PA PS + P SQ+ S+ +
Sbjct: 416 ERKDEPKTEQTEKAEEETRMENSLPAKVPS--RGDEMVADVQQPLSQIPSDTASPLLIL- 472
Query: 466 MQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVR-LWEAGWKQRYYKNK 524
P PN S T +P+ G S +EP+ E+ ++ L + K Y
Sbjct: 473 ------PPPVPNPSPTLRPVETPVVGAPGMGSVS-TEPDDEEGLKHLEQQAEKMVAYLQD 525
Query: 525 FDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY---------PFHYAPFASDF 575
+D DE+ K+ + +G+ L + A KWYY PF+ A F
Sbjct: 526 SALD--DERLASKLQEHRAKGVSIPLMHE----AMQKWYYKDPQGEIQGPFNNQEMAEWF 579
Query: 576 E-GIADMPSDFEKG-TKPFKPLEQLM---GVFPAASGNFLPPSWRKL 617
+ G M ++ + F+PL +M G P + G PP +L
Sbjct: 580 QAGYFTMSLLVKRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGEL 626
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,316,794
Number of Sequences: 37866
Number of extensions: 2287915
Number of successful extensions: 6877
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 6712
Number of HSP's gapped (non-prelim): 251
length of query: 950
length of database: 18,247,518
effective HSP length: 112
effective length of query: 838
effective length of database: 14,006,526
effective search space: 11737468788
effective search space used: 11737468788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.