Guide to the Human Genome
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Name: CPT1A Sequence: fasta or formatted (773aa) NCBI GI: 73623030
Description:

carnitine palmitoyltransferase 1A liver isoform 1

Referenced in:

Fatty Acid Oxidation and Ketone Bodies

Other entries for this name:
alt prot [756aa] carnitine palmitoyltransferase 1A liver isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         52           2
 C cysteine            1.6         12           1
 D aspartate           4.9         38           2
 E glutamate           5.6         43           2
 F phenylalanine       4.7         36           2
 G glycine             6.3         49           3
 H histidine           3.0         23           1
 I isoleucine          5.0         39           2
 K lysine              5.7         44           3
 L leucine             9.7         75           2
 M methionine          3.5         27           1
 N asparagine          3.1         24           2
 P proline             4.4         34           1
 Q glutamine           3.8         29           3
 R arginine            6.2         48           2
 S serine              7.4         57           2
 T threonine           5.7         44           2
 V valine              6.2         48           3
 W tryptophan          2.3         18           2
 Y tyrosine            4.3         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carnitine palmitoyltransferase 1A liver isoform 1 [H... 
CPT1A                 0.965   carnitine palmitoyltransferase 1A liver isoform 2 [H...
CPT1B                 0.646   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.646   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.646   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.646   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.646   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.608   carnitine palmitoyltransferase 1B isoform c 
CPT1C                 0.558   carnitine palmitoyltransferase 1C isoform 2 
CPT1C                 0.544   carnitine palmitoyltransferase 1C isoform 1 
CPT1B                 0.291   carnitine palmitoyltransferase 1B isoform d 
CRAT                  0.164   carnitine acetyltransferase precursor 
CHAT                  0.152   choline acetyltransferase isoform 1 
CHAT                  0.152   choline acetyltransferase isoform 1 
CHAT                  0.152   choline acetyltransferase isoform 3 
CHAT                  0.152   choline acetyltransferase isoform 1 
CHAT                  0.152   choline acetyltransferase isoform 1 
CHAT                  0.152   choline acetyltransferase isoform 1 
CHAT                  0.152   choline acetyltransferase isoform 2 
CROT                  0.141   peroxisomal carnitine O-octanoyltransferase isoform ...
CROT                  0.131   peroxisomal carnitine O-octanoyltransferase isoform...
CPT2                  0.117   carnitine O-palmitoyltransferase precursor 
BRPF1                 0.005   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.005   bromodomain and PHD finger-containing protein 1 isof...
COG6                  0.004   component of oligomeric golgi complex 6 isoform 2 [...
COG6                  0.004   component of oligomeric golgi complex 6 isoform 1 [H...
CLEC14A               0.004   C-type lectin domain family 14, member A 
SHANK1                0.003   SH3 and multiple ankyrin repeat domains 1 
ANKHD1                0.003   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.003   ankyrin repeat and KH domain containing 1 isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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