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Search of human proteins with 188536114
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188536114 PAN2 polyA specific ribonuclease subunit homolog
isoform 2 [Homo sapiens]
(1202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188536114 PAN2 polyA specific ribonuclease subunit homolog is... 2444 0.0
gi|188536112 PAN2 polyA specific ribonuclease subunit homolog is... 2430 0.0
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens] 68 6e-11
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens] 68 6e-11
gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo s... 65 5e-10
gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1... 57 1e-07
gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 ... 52 3e-06
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ... 48 5e-05
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ... 48 5e-05
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ... 48 5e-05
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ... 48 5e-05
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti... 48 5e-05
gi|126273519 exonuclease GOR [Homo sapiens] 48 6e-05
gi|145199237 transcription elongation factor B polypeptide 3 bin... 44 7e-04
gi|6857800 interferon stimulated exonuclease [Homo sapiens] 44 0.001
gi|76257392 ubiquitin specific protease 48 isoform b [Homo sapiens] 36 0.25
gi|52630449 ubiquitin specific protease 48 isoform a [Homo sapiens] 36 0.25
gi|32698815 ubiquitin thiolesterase 12 [Homo sapiens] 34 0.73
gi|197116355 ubiquitin specific peptidase 46 isoform 2 [Homo sap... 33 1.6
gi|31377709 ubiquitin specific peptidase 46 isoform 1 [Homo sapi... 33 1.6
gi|55770886 ubiquitin thiolesterase 3 [Homo sapiens] 33 2.1
gi|110347427 ubiquitin specific protease 34 [Homo sapiens] 32 2.8
gi|148539600 ubiquitin specific protease 53 [Homo sapiens] 32 2.8
gi|169215723 PREDICTED: ubiquitin specific peptidase 41 [Homo sa... 32 3.6
gi|239746654 PREDICTED: ubiquitin specific protease 41 [Homo sap... 32 3.6
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 32 4.7
gi|11967991 SRY-box 17 [Homo sapiens] 31 6.2
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 31 8.1
gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo sap... 31 8.1
gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo sap... 31 8.1
>gi|188536114 PAN2 polyA specific ribonuclease subunit homolog isoform
2 [Homo sapiens]
Length = 1202
Score = 2444 bits (6333), Expect = 0.0
Identities = 1202/1202 (100%), Positives = 1202/1202 (100%)
Query: 1 MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG 60
MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
Sbjct: 1 MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG 60
Query: 61 VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR 120
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
Sbjct: 61 VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR 120
Query: 121 QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSLLLTDSSTLLVGGLQNHILE 180
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSLLLTDSSTLLVGGLQNHILE
Sbjct: 121 QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSLLLTDSSTLLVGGLQNHILE 180
Query: 181 IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS 240
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS
Sbjct: 181 IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS 240
Query: 241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL 300
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
Sbjct: 241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL 300
Query: 301 AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS 360
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
Sbjct: 301 AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS 360
Query: 361 PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP 420
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
Sbjct: 361 PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP 420
Query: 421 RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE 480
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE
Sbjct: 421 RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE 480
Query: 481 EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP 540
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
Sbjct: 481 EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP 540
Query: 541 VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADS 600
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADS
Sbjct: 541 VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADS 600
Query: 601 DEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGAGGSSFCSSGDSVIGQLFSCE 660
DEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGAGGSSFCSSGDSVIGQLFSCE
Sbjct: 601 DEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGAGGSSFCSSGDSVIGQLFSCE 660
Query: 661 MENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCD 720
MENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCD
Sbjct: 661 MENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCD 720
Query: 721 TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKE 780
TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKE
Sbjct: 721 TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKE 780
Query: 781 FALADWKELGSPEGVLVCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPAR 840
FALADWKELGSPEGVLVCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPAR
Sbjct: 781 FALADWKELGSPEGVLVCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPAR 840
Query: 841 AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP 900
AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP
Sbjct: 841 AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP 900
Query: 901 IDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF 960
IDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF
Sbjct: 901 IDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF 960
Query: 961 IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE 1020
IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE
Sbjct: 961 IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE 1020
Query: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV
Sbjct: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
Query: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA 1140
GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA
Sbjct: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA 1140
Query: 1141 RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL 1200
RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL
Sbjct: 1141 RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL 1200
Query: 1201 AL 1202
AL
Sbjct: 1201 AL 1202
>gi|188536112 PAN2 polyA specific ribonuclease subunit homolog isoform
1 [Homo sapiens]
Length = 1198
Score = 2430 bits (6299), Expect = 0.0
Identities = 1198/1202 (99%), Positives = 1198/1202 (99%), Gaps = 4/1202 (0%)
Query: 1 MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG 60
MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
Sbjct: 1 MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG 60
Query: 61 VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR 120
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
Sbjct: 61 VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR 120
Query: 121 QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSLLLTDSSTLLVGGLQNHILE 180
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSLLLTDSSTLLVGGLQNHILE
Sbjct: 121 QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSLLLTDSSTLLVGGLQNHILE 180
Query: 181 IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS 240
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS
Sbjct: 181 IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS 240
Query: 241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL 300
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
Sbjct: 241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL 300
Query: 301 AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS 360
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
Sbjct: 301 AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS 360
Query: 361 PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP 420
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
Sbjct: 361 PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP 420
Query: 421 RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE 480
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE
Sbjct: 421 RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPVGREE 480
Query: 481 EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP 540
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
Sbjct: 481 EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP 540
Query: 541 VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADS 600
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADS
Sbjct: 541 VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADS 600
Query: 601 DEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGAGGSSFCSSGDSVIGQLFSCE 660
DEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGAGGSSFCSSGDSVIGQLFSCE
Sbjct: 601 DEASGKGNLARLIQRWNRFILTQLHQDMQELEIPQAYRGAGGSSFCSSGDSVIGQLFSCE 660
Query: 661 MENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCD 720
MENCSLCRCGSETVRASSTLLFTLSYPD DKTGKNYDFAQVLKRSICLDQNTQAWCD
Sbjct: 661 MENCSLCRCGSETVRASSTLLFTLSYPD----DKTGKNYDFAQVLKRSICLDQNTQAWCD 716
Query: 721 TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKE 780
TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKE
Sbjct: 717 TCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKE 776
Query: 781 FALADWKELGSPEGVLVCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPAR 840
FALADWKELGSPEGVLVCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPAR
Sbjct: 777 FALADWKELGSPEGVLVCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPAR 836
Query: 841 AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP 900
AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP
Sbjct: 837 AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP 896
Query: 901 IDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF 960
IDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF
Sbjct: 897 IDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTF 956
Query: 961 IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE 1020
IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE
Sbjct: 957 IPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE 1016
Query: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV
Sbjct: 1017 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1076
Query: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA 1140
GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA
Sbjct: 1077 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA 1136
Query: 1141 RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL 1200
RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL
Sbjct: 1137 RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL 1196
Query: 1201 AL 1202
AL
Sbjct: 1197 AL 1198
>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
Length = 743
Score = 67.8 bits (164), Expect = 6e-11
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
G +D+ + + +++DYLT +SGI KI + T LK +L+ L+ V
Sbjct: 254 GCCVMDELVKPENKILDYLTSFSGI-----TKKILNPVTTKLKDVQRQLKALLPPDAVLV 308
Query: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGET---HDSI 1137
GH L D R + ++ P V+DT L+ + R L+FLA L IQ HD+
Sbjct: 309 GHSLDLDLRALKMIHP--YVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDAT 366
Query: 1138 EDARTALQLYRKYLE 1152
EDART L+L R +L+
Sbjct: 367 EDARTILELARYFLK 381
>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
Length = 774
Score = 67.8 bits (164), Expect = 6e-11
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
G +D+ + + +++DYLT +SGI KI + T LK +L+ L+ V
Sbjct: 254 GCCVMDELVKPENKILDYLTSFSGI-----TKKILNPVTTKLKDVQRQLKALLPPDAVLV 308
Query: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGET---HDSI 1137
GH L D R + ++ P V+DT L+ + R L+FLA L IQ HD+
Sbjct: 309 GHSLDLDLRALKMIHP--YVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDAT 366
Query: 1138 EDARTALQLYRKYLE 1152
EDART L+L R +L+
Sbjct: 367 EDARTILELARYFLK 381
>gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo
sapiens]
Length = 422
Score = 64.7 bits (156), Expect = 5e-10
Identities = 65/218 (29%), Positives = 94/218 (43%), Gaps = 35/218 (16%)
Query: 938 IEASVLLAEASLARKQRKTHTTFIPLMLNEMPQIGDL---VGLDAEFVTLNEEEAELRSD 994
IEA++ A +ARKQ + L L + G L + LD E V +
Sbjct: 204 IEAAIGPEAAKIARKQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGP-------- 255
Query: 995 GTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKI 1054
K + AR++ V G D Y+ E V DY T SGI+P +L
Sbjct: 256 ------KGEESMAARVSIVNQYGKC----VYDKYVKPTEPVTDYRTAVSGIRPENLKQGE 305
Query: 1055 SSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRM 1114
+ + + LK R L VGH L D +V+ L PK ++ DT + P K
Sbjct: 306 ELEVVQKEVAEMLKGRIL-------VGHALHNDLKVLFLDHPKKKIRDTQK--YKPFKSQ 356
Query: 1115 I-----SLRFLAWYFLDLKIQGETHDSIEDARTALQLY 1147
+ SLR L+ L L++Q H SI+DA+ A++LY
Sbjct: 357 VKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLY 394
>gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1
[Homo sapiens]
Length = 325
Score = 57.0 bits (136), Expect = 1e-07
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDI--GVKFVGHG 1083
D YI + + DY T++SGI + +H+ + + ++ + G VGH
Sbjct: 144 DKYIRPEMPIADYRTRWSGI---------TRQHMRKAVPFQVAQKEILKLLKGKVVVGHA 194
Query: 1084 LQKDFRVINLMVPKDQVLDTVYLFH------MPRKRMISLRFLAWYFLDLKIQ--GETHD 1135
L DF+ + + P+ Q DT Y+ + + + +SL+ LA L KIQ H
Sbjct: 195 LHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHS 254
Query: 1136 SIEDARTALQLYR 1148
S+EDA TA++LYR
Sbjct: 255 SVEDATTAMELYR 267
>gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 [Homo
sapiens]
Length = 353
Score = 52.0 bits (123), Expect = 3e-06
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 988 EAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKP 1047
+ E+ G K + S+AR + V G D+YI +VDY T++SGI+
Sbjct: 183 DCEMVGTGPKGHVS----SLARCSIVNYNGD----VLYDEYILPPCHIVDYRTRWSGIRK 234
Query: 1048 GDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLF 1107
+ +++ + LK+ G VGH + DF+ + PK DT ++
Sbjct: 235 QHM---VNATPFKIARGQILKIL----TGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIP 287
Query: 1108 HMPRK------RMISLRFLAWYFL--DLKIQGETHDSIEDARTALQLYR 1148
+ RK +SL+ L L D+++ H S+EDA+ ++LY+
Sbjct: 288 PLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYK 336
>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
sapiens]
Length = 675
Score = 48.1 bits (113), Expect = 5e-05
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ D+ +K TL L +GH L+
Sbjct: 532 DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 586
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D + L+ V+DT LF P KR SLR LA +L IQ + H+S ED
Sbjct: 587 SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 642
Query: 1140 ARTALQL 1146
A LQL
Sbjct: 643 ANACLQL 649
>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
sapiens]
Length = 675
Score = 48.1 bits (113), Expect = 5e-05
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ D+ +K TL L +GH L+
Sbjct: 532 DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 586
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D + L+ V+DT LF P KR SLR LA +L IQ + H+S ED
Sbjct: 587 SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 642
Query: 1140 ARTALQL 1146
A LQL
Sbjct: 643 ANACLQL 649
>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
sapiens]
Length = 675
Score = 48.1 bits (113), Expect = 5e-05
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ D+ +K TL L +GH L+
Sbjct: 532 DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 586
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D + L+ V+DT LF P KR SLR LA +L IQ + H+S ED
Sbjct: 587 SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 642
Query: 1140 ARTALQL 1146
A LQL
Sbjct: 643 ANACLQL 649
>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
sapiens]
Length = 675
Score = 48.1 bits (113), Expect = 5e-05
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ D+ +K TL L +GH L+
Sbjct: 532 DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 586
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D + L+ V+DT LF P KR SLR LA +L IQ + H+S ED
Sbjct: 587 SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 642
Query: 1140 ARTALQL 1146
A LQL
Sbjct: 643 ANACLQL 649
>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
[Homo sapiens]
Length = 552
Score = 48.1 bits (113), Expect = 5e-05
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ D+ +K TL L +GH L+
Sbjct: 409 DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 463
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D + L+ V+DT LF P KR SLR LA +L IQ + H+S ED
Sbjct: 464 SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 519
Query: 1140 ARTALQL 1146
A LQL
Sbjct: 520 ANACLQL 526
>gi|126273519 exonuclease GOR [Homo sapiens]
Length = 675
Score = 47.8 bits (112), Expect = 6e-05
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ D+ +K TL L +GH L+
Sbjct: 532 DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 586
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D + L+ V+DT LF P KR SLR LA +L IQ + H+S ED
Sbjct: 587 SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 642
Query: 1140 ARTALQL 1146
A LQL
Sbjct: 643 ASACLQL 649
>gi|145199237 transcription elongation factor B polypeptide 3 binding
protein 1 [Homo sapiens]
Length = 1221
Score = 44.3 bits (103), Expect = 7e-04
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085
D ++ ++VDY T++SG+ DL + TL+ L + +GH L+
Sbjct: 1091 DTFVKPDNEIVDYNTRFSGVTEADL-----ADTSVTLRDVQAVLLSMFSADTILIGHSLE 1145
Query: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139
D ++ L V V+DT LF +P KR SLR L +L IQ + H S ED
Sbjct: 1146 SD--LLALKVIHSTVVDTSVLFPHRLGLPYKR--SLRNLMADYLRQIIQDNVDGHSSSED 1201
Query: 1140 ARTALQL 1146
A + L
Sbjct: 1202 AGACMHL 1208
>gi|6857800 interferon stimulated exonuclease [Homo sapiens]
Length = 181
Score = 43.5 bits (101), Expect = 0.001
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
G D +I + ++ DY T+ SG+ P + + + + L+L G V
Sbjct: 35 GAVLYDKFIRPEGEITDYRTRVSGVTPQHM---VGATPFAVARLEILQLL----KGKLVV 87
Query: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRK------RMISLRFLAWYFLDLKIQGET- 1133
GH L+ DF+ + + + DT + R+ R +SLR L+ L IQ
Sbjct: 88 GHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL 147
Query: 1134 -HDSIEDARTALQLYR 1148
H S+EDAR ++LY+
Sbjct: 148 GHSSVEDARATMELYQ 163
>gi|76257392 ubiquitin specific protease 48 isoform b [Homo sapiens]
Length = 485
Score = 35.8 bits (81), Expect = 0.25
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 842 EEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPI 901
E + G YVY+L A ++H S G +AH+K ++ +WY FND E I
Sbjct: 328 EHKGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQS----------GEWYKFND---EDI 374
Query: 902 DKHEAVQFDM 911
+K E + +
Sbjct: 375 EKMEGKKLQL 384
>gi|52630449 ubiquitin specific protease 48 isoform a [Homo sapiens]
Length = 1035
Score = 35.8 bits (81), Expect = 0.25
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 842 EEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPI 901
E + G YVY+L A ++H S G +AH+K ++ +WY FND E I
Sbjct: 328 EHKGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQS----------GEWYKFND---EDI 374
Query: 902 DKHEAVQFDM 911
+K E + +
Sbjct: 375 EKMEGKKLQL 384
>gi|32698815 ubiquitin thiolesterase 12 [Homo sapiens]
Length = 370
Score = 34.3 bits (77), Expect = 0.73
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 37/202 (18%)
Query: 743 INCEVNSSKEADFWRMQAEVAFKMAVKKHGGEISKNKEFALADWKELGSPEGVLVCPSIE 802
+ CE SSK+ DF + +V ++ H N E +++K C S +
Sbjct: 187 LTCETISSKDEDFLDLSVDVEQNTSIT-HCLRGFSNTETLCSEYKYYCEE-----CRSKQ 240
Query: 803 E----LKNVWLPFSIRMKMTKNKGLDVCN-WTDGD-------EMQWGPARAEEEHGVYVY 850
E +K LP + + + + K +D + +T E++ + + +Y
Sbjct: 241 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY 300
Query: 851 DLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKHEAVQF- 909
DL+A VVH G +A +K +H W LF+D ++E ID +F
Sbjct: 301 DLVAVVVHCGSGPNRGHYIAIVK------------SHDFWLLFDDDIVEKIDAQAIEEFY 348
Query: 910 ------DMNWKVPAILYYVKRN 925
N + IL+Y R+
Sbjct: 349 GLTSDISKNSESGYILFYQSRD 370
Score = 31.2 bits (69), Expect = 6.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 500 KLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQ---KEFCL 556
++G E F + + GL YCN ++Q LYF P R + + Q KE L
Sbjct: 26 EIGPEQFPVNEH----YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKESLL 81
Query: 557 ACELGFLFHML 567
C L LFH +
Sbjct: 82 TC-LADLFHSI 91
>gi|197116355 ubiquitin specific peptidase 46 isoform 2 [Homo
sapiens]
Length = 359
Score = 33.1 bits (74), Expect = 1.6
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 32/254 (12%)
Query: 501 LGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQ---KEFCLA 557
+G E F + + GL YCN ++Q LYF P R + + Q KE L
Sbjct: 16 IGPEQFPINEH----YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLT 71
Query: 558 CELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADSDEASGKGNLARLIQRWN 617
C L LFH + + + IP + + ++D + + +
Sbjct: 72 C-LADLFHSIATQK----------KKVGVIPPKKFISRLRKENDLFD--NYMQQDAHEFL 118
Query: 618 RFILTQLHQDMQELEIPQAYRGA---GGSSFCSSGD----SVIGQLFSCEMENCSLCRCG 670
++L + +QE + + G G + + + + + ++F + N + C
Sbjct: 119 NYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRC-LN 177
Query: 671 SETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCDTCEKYQPTIQ 730
ETV + LS + T DF+ ++C +Q + +C+TC Q +
Sbjct: 178 CETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNT--ETLCSEQ--KYYCETCCSKQEAQK 233
Query: 731 TRNIRHLPDILVIN 744
++ LP IL ++
Sbjct: 234 RMRVKKLPMILALH 247
Score = 31.2 bits (69), Expect = 6.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 849 VYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKHEAVQ 908
+YDL+A VVH G + +K +H W LF+D ++E ID +
Sbjct: 288 MYDLVAVVVHCGSGPNRGHYITIVK------------SHGFWLLFDDDIVEKIDAQAIEE 335
Query: 909 F 909
F
Sbjct: 336 F 336
>gi|31377709 ubiquitin specific peptidase 46 isoform 1 [Homo
sapiens]
Length = 366
Score = 33.1 bits (74), Expect = 1.6
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 32/254 (12%)
Query: 501 LGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQ---KEFCLA 557
+G E F + + GL YCN ++Q LYF P R + + Q KE L
Sbjct: 23 IGPEQFPINEH----YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLT 78
Query: 558 CELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADSDEASGKGNLARLIQRWN 617
C L LFH + + + IP + + ++D + + +
Sbjct: 79 C-LADLFHSIATQK----------KKVGVIPPKKFISRLRKENDLFD--NYMQQDAHEFL 125
Query: 618 RFILTQLHQDMQELEIPQAYRGA---GGSSFCSSGD----SVIGQLFSCEMENCSLCRCG 670
++L + +QE + + G G + + + + + ++F + N + C
Sbjct: 126 NYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRC-LN 184
Query: 671 SETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCDTCEKYQPTIQ 730
ETV + LS + T DF+ ++C +Q + +C+TC Q +
Sbjct: 185 CETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNT--ETLCSEQ--KYYCETCCSKQEAQK 240
Query: 731 TRNIRHLPDILVIN 744
++ LP IL ++
Sbjct: 241 RMRVKKLPMILALH 254
Score = 31.2 bits (69), Expect = 6.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 849 VYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKHEAVQ 908
+YDL+A VVH G + +K +H W LF+D ++E ID +
Sbjct: 295 MYDLVAVVVHCGSGPNRGHYITIVK------------SHGFWLLFDDDIVEKIDAQAIEE 342
Query: 909 F 909
F
Sbjct: 343 F 343
>gi|55770886 ubiquitin thiolesterase 3 [Homo sapiens]
Length = 520
Score = 32.7 bits (73), Expect = 2.1
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 618 RFILTQLHQDMQ-------ELEIPQAYRGAGGSSFC--SSGDSVIGQLFSCEMENCSLCR 668
R++L LH ++Q I Q S+ C + +V+ +F ++N C
Sbjct: 266 RYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCL 325
Query: 669 -CGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICL---------DQNTQAW 718
CG+E+ + L +L P +S K KN + V CL D+
Sbjct: 326 ICGTESRKFDPFLDLSLDIPSQFRS-KRSKNQENGPVCSLRDCLRSFTDLEELDETELYM 384
Query: 719 CDTCEKYQPTIQTRNIRHLPDILVIN 744
C C+K Q + + I+ LP +L ++
Sbjct: 385 CHKCKKKQKSTKKFWIQKLPKVLCLH 410
>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
Length = 3546
Score = 32.3 bits (72), Expect = 2.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 848 YVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPID 902
Y YDL+ VH + GG + I+ H K + +WYLFND ++P D
Sbjct: 2146 YEYDLIGVTVHT-GTADGGHYYSFIRDIVNPHAYK----NNKWYLFNDAEVKPFD 2195
>gi|148539600 ubiquitin specific protease 53 [Homo sapiens]
Length = 1073
Score = 32.3 bits (72), Expect = 2.8
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 520 EPHIPNAYCNCMIQVLYFLEPVRC---LIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQ 576
EP + + N +QVL+ L+ R ++ H+CQ + C+ C L +F SR
Sbjct: 35 EPGQNSCFLNSAVQVLWQLDIFRRSLRVLTGHVCQGDACIFCALKTIFAQFQHSREKALP 94
Query: 577 GNNFLRA 583
+N A
Sbjct: 95 SDNIRHA 101
>gi|169215723 PREDICTED: ubiquitin specific peptidase 41 [Homo
sapiens]
Length = 346
Score = 32.0 bits (71), Expect = 3.6
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 656 LFSCEMENCSLCR-CGSETVRASSTLLFTLSYPD-GSKSDKTGKNYDFAQVLKRSICLDQ 713
L+ M++ +C C E+ R SS L LS+ D SK KT ++ R L
Sbjct: 156 LYMIRMKDSLICLDCAMESSRNSSMLTLRLSFFDVDSKPLKTLEDALHCFFQPRE--LSS 213
Query: 714 NTQAWCDTCEKYQPTIQTRNIRHLPDILVIN 744
++ +C+ C K Q + HLP L I+
Sbjct: 214 KSKCFCENCGKKTRGKQVLKLTHLPQTLTIH 244
>gi|239746654 PREDICTED: ubiquitin specific protease 41 [Homo
sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 3.6
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 656 LFSCEMENCSLCR-CGSETVRASSTLLFTLSYPD-GSKSDKTGKNYDFAQVLKRSICLDQ 713
L+ M++ +C C E+ R SS L LS+ D SK KT ++ R L
Sbjct: 156 LYMIRMKDSLICLDCAMESSRNSSMLTLRLSFFDVDSKPLKTLEDALHCFFQPRE--LSS 213
Query: 714 NTQAWCDTCEKYQPTIQTRNIRHLPDILVIN 744
++ +C+ C K Q + HLP L I+
Sbjct: 214 KSKCFCENCGKKTRGKQVLKLTHLPQTLTIH 244
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 [Homo
sapiens]
Length = 916
Score = 31.6 bits (70), Expect = 4.7
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 986 EEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGI 1045
EEEA LR D T++ I+ + + + V+ + +D + + + V +L
Sbjct: 190 EEEARLRDD-TEAAIRALRKDIEEASLVKVE--------LDKKVQSLQDEVAFLRSNHEE 240
Query: 1046 KPGDLDAKISSKHLTTLKSTYLK 1068
+ DL A+I + H+T + YLK
Sbjct: 241 EVADLLAQIQASHITVERKDYLK 263
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 31.2 bits (69), Expect = 6.2
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 371 ETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAPRRA-PPVDAE 429
+T+ ALP ++ L P W++ L P+ + V + PA + APA ++
Sbjct: 15 QTQSALPAVMAGLGPCPWAESLSPIGDMKVK-------GEAPANSGAPAGAAGRAKGESR 67
Query: 430 ILRTMKKVGFIGYAPNPRTRLRNQIP 455
I R M F+ +A + R RL Q P
Sbjct: 68 IRRPMN--AFMVWAKDERKRLAQQNP 91
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 30.8 bits (68), Expect = 8.1
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 19/90 (21%)
Query: 340 ASKQALAFGDSEGCVHLWTDSPEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPL-SLI 398
A AL + GC + P P P +P L+ +L P+ +L
Sbjct: 307 AQPPALTPESAPGCTTEFAPGPAPGTEP---------------VPGLELGLELEPVPALG 351
Query: 399 PVP---LTTDTLLSDWPAANSAPAPRRAPP 425
PVP +T +L + WP PAP PP
Sbjct: 352 PVPGPSVTPGSLPAPWPVLGPVPAPGAQPP 381
>gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 8.1
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 683 TLSYPDGSKSDKTGKNYDFAQVLK----RSICLDQNTQAWCDTCEKYQPTIQTRNIRHLP 738
T+ +P+G K DF LK R + +D + WC C +P +++H
Sbjct: 374 TMEFPEGDKVKVILSKEDFEASLKEAGERLVAVDFSA-TWCGPCRTIRPFFHALSVKH-E 431
Query: 739 DILVINCEVNSSKE 752
D++ + + ++ +E
Sbjct: 432 DVVFLEVDADNCEE 445
>gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo
sapiens]
Length = 553
Score = 30.8 bits (68), Expect = 8.1
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 683 TLSYPDGSKSDKTGKNYDFAQVLK----RSICLDQNTQAWCDTCEKYQPTIQTRNIRHLP 738
T+ +P+G K DF LK R + +D + WC C +P +++H
Sbjct: 441 TMEFPEGDKVKVILSKEDFEASLKEAGERLVAVDFSA-TWCGPCRTIRPFFHALSVKH-E 498
Query: 739 DILVINCEVNSSKE 752
D++ + + ++ +E
Sbjct: 499 DVVFLEVDADNCEE 512
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,716,220
Number of Sequences: 37866
Number of extensions: 2188088
Number of successful extensions: 5019
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4981
Number of HSP's gapped (non-prelim): 50
length of query: 1202
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1088
effective length of database: 13,930,794
effective search space: 15156703872
effective search space used: 15156703872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.