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Search of human proteins with 188497632
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188497632 HERPUD family member 2 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188497632 HERPUD family member 2 [Homo sapiens] 833 0.0
gi|7661870 homocysteine-inducible, endoplasmic reticulum stress-... 270 2e-72
gi|58530857 homocysteine-inducible, endoplasmic reticulum stress... 263 2e-70
gi|58530859 homocysteine-inducible, endoplasmic reticulum stress... 238 6e-63
gi|46195763 metastasis suppressor 1-like [Homo sapiens] 42 8e-04
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 42 0.001
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 39 0.008
gi|188536004 zinc finger protein 469 [Homo sapiens] 38 0.014
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 37 0.032
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 36 0.055
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 36 0.055
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 36 0.071
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 36 0.071
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 36 0.071
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 35 0.16
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 35 0.16
gi|167736355 mucin 4 isoform a [Homo sapiens] 35 0.16
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.16
gi|55741677 SET domain containing 1A [Homo sapiens] 34 0.21
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 34 0.21
gi|67010025 Sp4 transcription factor [Homo sapiens] 33 0.35
gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1 ... 33 0.35
gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1 [... 33 0.35
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 33 0.60
gi|65288071 tensin 3 [Homo sapiens] 33 0.60
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 33 0.60
gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens] 32 0.79
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 32 0.79
gi|161016767 mucin 21 [Homo sapiens] 32 0.79
gi|29789060 hypothetical protein LOC9847 [Homo sapiens] 32 0.79
>gi|188497632 HERPUD family member 2 [Homo sapiens]
Length = 406
Score = 833 bits (2152), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSG 60
MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSG
Sbjct: 1 MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSG 60
Query: 61 RLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGS 120
RLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGS
Sbjct: 61 RLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGS 120
Query: 121 TTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGF 180
TTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGF
Sbjct: 121 TTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGF 180
Query: 181 PVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPP 240
PVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPP
Sbjct: 181 PVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPP 240
Query: 241 PAPNLVAQENRPMNENVQMNAQGGPVLNEEDFNRDWLDWMYTFSRAAILLSIVYFYSSFS 300
PAPNLVAQENRPMNENVQMNAQGGPVLNEEDFNRDWLDWMYTFSRAAILLSIVYFYSSFS
Sbjct: 241 PAPNLVAQENRPMNENVQMNAQGGPVLNEEDFNRDWLDWMYTFSRAAILLSIVYFYSSFS 300
Query: 301 RFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNNNAEVNNDGQNANNLELEEMERLMDDG 360
RFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNNNAEVNNDGQNANNLELEEMERLMDDG
Sbjct: 301 RFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNNNAEVNNDGQNANNLELEEMERLMDDG 360
Query: 361 LEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN 406
LEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN
Sbjct: 361 LEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN 406
>gi|7661870 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
1 [Homo sapiens]
Length = 391
Score = 270 bits (689), Expect = 2e-72
Identities = 163/420 (38%), Positives = 230/420 (54%), Gaps = 59/420 (14%)
Query: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
PVTL++K+PNQ++ D +S W+VG LK HLS VYP +P +DQRL+YSG+LL DH
Sbjct: 9 PVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 68
Query: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQE 128
L+D+L KQ++ H++HLVC ++P P E A + S+ + +GS ++
Sbjct: 69 LRDLLPKQEKRHVLHLVCNVKSPSKMP---------EINAKVAESTEEPAGSNRGQYPED 119
Query: 129 TLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSP 188
SSS+GLRQR + + S + + + Q Q PGF Y +
Sbjct: 120 -------SSSDGLRQREVLR----NLSSPGWENISRPEAAQQ-AFQGLGPGFSGYTPYGW 167
Query: 189 LQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAPNLVAQ 248
LQ+ W+QQ+YA QYYMQY AA +A P ++Q + + P P P N
Sbjct: 168 LQLSWFQQIYARQYYMQYLAATAASGAF----VPPPSAQEIPVVSAPA--PAPIHNQFPA 221
Query: 249 ENRP--------------MNENVQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILLSIV 293
EN+P N+N++MNAQGGP++ E+D NRDWLDW Y+ + ++ LSI+
Sbjct: 222 ENQPANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSIL 281
Query: 294 YFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNN-------NAEVNNDGQNAN 346
YFYSS SRF+MVMGA +++YLH GWFPFR Q PN+ N + NN+ Q
Sbjct: 282 YFYSSLSRFLMVMGATVVMYLHHVGWFPFRPR-PVQNFPNDGPPPDVVNQDPNNNLQEGT 340
Query: 347 NLELEEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN 406
+ E E+ L D DG + + P M++AW TFF SL+PEGPP +AN
Sbjct: 341 DPETEDPNHLP----PDRDVLDGEQTS-----PSFMSTAWLVFKTFFASLLPEGPPAIAN 391
>gi|58530857 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
2 [Homo sapiens]
Length = 390
Score = 263 bits (672), Expect = 2e-70
Identities = 162/420 (38%), Positives = 228/420 (54%), Gaps = 60/420 (14%)
Query: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
PVTL++K+PNQ++ D +S W+VG LK HLS VYP +P +DQRL+YSG+LL DH
Sbjct: 9 PVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 68
Query: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQE 128
L+D+L K+ H++HLVC ++P P E A + S+ + +GS ++
Sbjct: 69 LRDLLPKEKR-HVLHLVCNVKSPSKMP---------EINAKVAESTEEPAGSNRGQYPED 118
Query: 129 TLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSP 188
SSS+GLRQR + + S + + + Q Q PGF Y +
Sbjct: 119 -------SSSDGLRQREVLR----NLSSPGWENISRPEAAQQ-AFQGLGPGFSGYTPYGW 166
Query: 189 LQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAPNLVAQ 248
LQ+ W+QQ+YA QYYMQY AA +A P ++Q + + P P P N
Sbjct: 167 LQLSWFQQIYARQYYMQYLAATAASGAF----VPPPSAQEIPVVSAPA--PAPIHNQFPA 220
Query: 249 ENRPMNEN--------------VQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILLSIV 293
EN+P N+N ++MNAQGGP++ E+D NRDWLDW Y+ + ++ LSI+
Sbjct: 221 ENQPANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSIL 280
Query: 294 YFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNN-------NAEVNNDGQNAN 346
YFYSS SRF+MVMGA +++YLH GWFPFR Q PN+ N + NN+ Q
Sbjct: 281 YFYSSLSRFLMVMGATVVMYLHHVGWFPFRPR-PVQNFPNDGPPPDVVNQDPNNNLQEGT 339
Query: 347 NLELEEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN 406
+ E E+ L D DG + + P M++AW TFF SL+PEGPP +AN
Sbjct: 340 DPETEDPNHLP----PDRDVLDGEQTS-----PSFMSTAWLVFKTFFASLLPEGPPAIAN 390
>gi|58530859 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
3 [Homo sapiens]
Length = 366
Score = 238 bits (608), Expect = 6e-63
Identities = 154/420 (36%), Positives = 210/420 (50%), Gaps = 84/420 (20%)
Query: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
PVTL++K+PNQ++ D +S W+VG LK HLS VYP +P +DQRL+YSG+LL DH
Sbjct: 9 PVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 68
Query: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQE 128
L+D+L K E ST +G
Sbjct: 69 LRDLLPKVAE-----------------------------------------STEEPAGSN 87
Query: 129 TLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSP 188
SSS+GLRQR + + S + + + Q Q PGF Y +
Sbjct: 88 RGQYPEDSSSDGLRQREVLR----NLSSPGWENISRPEAAQQ-AFQGLGPGFSGYTPYGW 142
Query: 189 LQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAPNLVAQ 248
LQ+ W+QQ+YA QYYMQY AA +A P ++Q + + P P P N
Sbjct: 143 LQLSWFQQIYARQYYMQYLAATAASGAF----VPPPSAQEIPVVSAPA--PAPIHNQFPA 196
Query: 249 ENRPMNEN--------------VQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILLSIV 293
EN+P N+N ++MNAQGGP++ E+D NRDWLDW Y+ + ++ LSI+
Sbjct: 197 ENQPANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSIL 256
Query: 294 YFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNN-------NAEVNNDGQNAN 346
YFYSS SRF+MVMGA +++YLH GWFPFR Q PN+ N + NN+ Q
Sbjct: 257 YFYSSLSRFLMVMGATVVMYLHHVGWFPFRPR-PVQNFPNDGPPPDVVNQDPNNNLQEGT 315
Query: 347 NLELEEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN 406
+ E E+ L D DG + + P M++AW TFF SL+PEGPP +AN
Sbjct: 316 DPETEDPNHLP----PDRDVLDGEQTS-----PSFMSTAWLVFKTFFASLLPEGPPAIAN 366
>gi|46195763 metastasis suppressor 1-like [Homo sapiens]
Length = 747
Score = 42.4 bits (98), Expect = 8e-04
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 89 RTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQ 148
+TPPSSP SS++R+S A SS+SS+ G+ P G +T S + L Q
Sbjct: 259 QTPPSSPSSSSSRKSSMCSAPSSSSSAKGGGAPWP-GGAQTYSPSSTCRYRSLAQPATTT 317
Query: 149 AQTDQAQSHQFPYVMQ 164
A+ SH +V Q
Sbjct: 318 ARLSSVSSHDSGFVSQ 333
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 37/180 (20%)
Query: 90 TPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQA 149
+P SS SS++ S + +SSS+SSS S S++ SS + S + SSS + +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Query: 150 QTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAA 209
T S + D P A P QAA
Sbjct: 2671 STTDEDS------SCSSDDEAAPAPTAGP--------------------------SAQAA 2698
Query: 210 VSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAPNLVAQENRPMNENVQMNAQGGPVLNE 269
+ +AT +P+ P P + PP Q +P+ Q A+ P E
Sbjct: 2699 LPTKATKQAGKARPSAHSPGKKTPAPQPQAPP-----PQPTQPLQPKAQAGAKSRPKKRE 2753
Score = 33.5 bits (75), Expect = 0.35
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTL 146
+S + SS SS++ S + +SSS+SSS S + SS A ++ Q L
Sbjct: 2640 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAAL 2699
Query: 147 PQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYP 184
P T QA + P P APP P P
Sbjct: 2700 PTKATKQAGKAR-PSAHSPGKKTPAPQPQAPPPQPTQP 2736
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 12/165 (7%)
Query: 91 PPSS---PKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLP 147
PP+S P++ + A S+ + + T S G T S + GS + LP
Sbjct: 535 PPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLP 594
Query: 148 QAQTDQAQSHQFPYV------MQGNVDNQFPGQAAPP---GFPVYPAFSPLQMLWWQQMY 198
+ + P ++ D P + P G+P Y P + QQ
Sbjct: 595 SKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQ 654
Query: 199 AHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAP 243
+ Q+Q Q ++ P P+ QP+ L VP + PP P
Sbjct: 655 LLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPP 699
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 38.1 bits (87), Expect = 0.014
Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 26/150 (17%)
Query: 60 GRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSG 119
GR PDH Q +L+K+ E H+V P+ + ++ S A +SS D S
Sbjct: 3603 GRCAPDHFQEDHLLQKEKEVSSSHMV-----SEGGPRGTFHKGSATKPAGCQSSSKDRSA 3657
Query: 120 STTPSSG--------QETLSLAVGSSSEGLRQRTLP------QAQTDQAQSHQFPYVMQG 165
++TPS + SLA G + G P + Q P G
Sbjct: 3658 ASTPSKALKFPVHPRKAVGSLAPGELARGTENGMKPATPKAKPGPSSQGSGSPRPGTKTG 3717
Query: 166 NVDNQFPGQ-------AAPPGFPVYPAFSP 188
P A P P +P+ SP
Sbjct: 3718 GGSQPQPASGQLQSETATTPAKPSFPSRSP 3747
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 37.0 bits (84), Expect = 0.032
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 86 CTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRT 145
C+SR+ SS SS SH SSS+SSS S +++ SS + S + SSS
Sbjct: 2143 CSSRSSSSSSSSSC---SHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 2199
Query: 146 LPQAQTDQAQSHQFPY 161
+AQ ++ +H Y
Sbjct: 2200 EEEAQKRESTTHMKAY 2215
Score = 28.9 bits (63), Expect = 8.7
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 82 VHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSS 138
VH + + S S + S + +SSS+SS HS S + SS + S A SSS
Sbjct: 2123 VHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSS 2179
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 36.2 bits (82), Expect = 0.055
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 14 IKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDIL 73
+K P +K + + N +V + K +S + S T L+++G++L D +D L
Sbjct: 41 VKTPKEK---EEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKD----QDTL 91
Query: 74 RKQDEYH--MVHLVC-TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS-GQET 129
+ + VHLV T P TN SS+ +S+ SGS T + G
Sbjct: 92 SQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGG 151
Query: 130 LSLAVGSSSEGLRQRTLPQAQTD-QAQSHQFPYVMQGNVDNQF 171
L G SS GL + Q+ Q Q P +M ++N F
Sbjct: 152 LGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPF 194
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 36.2 bits (82), Expect = 0.055
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 14 IKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDIL 73
+K P +K + + N +V + K +S + S T L+++G++L D +D L
Sbjct: 41 VKTPKEK---EEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKD----QDTL 91
Query: 74 RKQDEYH--MVHLVC-TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS-GQET 129
+ + VHLV T P TN SS+ +S+ SGS T + G
Sbjct: 92 SQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGG 151
Query: 130 LSLAVGSSSEGLRQRTLPQAQTD-QAQSHQFPYVMQGNVDNQF 171
L G SS GL + Q+ Q Q P +M ++N F
Sbjct: 152 LGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPF 194
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 35.8 bits (81), Expect = 0.071
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 QRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNS 113
Q+L+Y+G++L D LK+ K DE + V ++ T S+P +T ++S A ++ S
Sbjct: 44 QKLIYAGKILNDDTALKEY--KIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTS 101
Query: 114 SSDHSGSTTPS 124
S+ + + P+
Sbjct: 102 STTTTVAQAPT 112
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 35.8 bits (81), Expect = 0.071
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 11/135 (8%)
Query: 112 NSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQF 171
N S H P Q+ S + +Q PQ+Q Q QS Q PY Q +Q
Sbjct: 472 NQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQ---PQSQPPQLQSSQPPYSQQ---PSQP 525
Query: 172 PGQAAPPGFPVYPAFS---PLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPT--QPTTS 226
P Q +P +P + + P + Q A Y Q Q A +T + QP +
Sbjct: 526 PHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQ 585
Query: 227 QPLNLAHVPGEEPPP 241
Q A+ PPP
Sbjct: 586 QSQQTAYSQQRFPPP 600
Score = 29.6 bits (65), Expect = 5.1
Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 46/202 (22%)
Query: 92 PSSPKSSTNRESHEALASSSNSSSDHSGS--------TTPSSGQETLSLAVGSSSEGLRQ 143
P S +S S + S D GS T+ GQE ++L++ S L
Sbjct: 582 PQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPD 641
Query: 144 RT-----LPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMY 198
+ LP T+ A S P V + + Q+ P P P SP
Sbjct: 642 LSGSIDDLPMG-TEGALS---PGVSTSGISSSQGEQSNPAQSPFSPHTSP---------- 687
Query: 199 AHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAP--------------- 243
++ S + + S PL+ A VPG + PP P
Sbjct: 688 ----HLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQ 743
Query: 244 NLVAQENRPMNENVQMNAQGGP 265
+ +AQ+ M N QM P
Sbjct: 744 SSIAQDRGYMQRNPQMPQYSSP 765
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 35.8 bits (81), Expect = 0.071
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 11/135 (8%)
Query: 112 NSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQF 171
N S H P Q+ S + +Q PQ+Q Q QS Q PY Q +Q
Sbjct: 472 NQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQ---PQSQPPQLQSSQPPYSQQ---PSQP 525
Query: 172 PGQAAPPGFPVYPAFS---PLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPT--QPTTS 226
P Q +P +P + + P + Q A Y Q Q A +T + QP +
Sbjct: 526 PHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQ 585
Query: 227 QPLNLAHVPGEEPPP 241
Q A+ PPP
Sbjct: 586 QSQQTAYSQQRFPPP 600
Score = 30.8 bits (68), Expect = 2.3
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 164 QGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNP--- 220
+GN+ P P P +SP + QQ Q + Y S Q T + +P
Sbjct: 1297 EGNMSTGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPS 1356
Query: 221 TQPTTSQPLNLAHVPGEEPPPAPNLVAQENRP-MNENVQMNAQGGPV 266
Q T Q P P P N + P ++ ++M G PV
Sbjct: 1357 QQTTMYQQQQQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPV 1403
Score = 29.6 bits (65), Expect = 5.1
Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 46/202 (22%)
Query: 92 PSSPKSSTNRESHEALASSSNSSSDHSGS--------TTPSSGQETLSLAVGSSSEGLRQ 143
P S +S S + S D GS T+ GQE ++L++ S L
Sbjct: 582 PQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPD 641
Query: 144 RT-----LPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMY 198
+ LP T+ A S P V + + Q+ P P P SP
Sbjct: 642 LSGSIDDLPMG-TEGALS---PGVSTSGISSSQGEQSNPAQSPFSPHTSP---------- 687
Query: 199 AHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAP--------------- 243
++ S + + S PL+ A VPG + PP P
Sbjct: 688 ----HLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQ 743
Query: 244 NLVAQENRPMNENVQMNAQGGP 265
+ +AQ+ M N QM P
Sbjct: 744 SSIAQDRGYMQRNPQMPQYSSP 765
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 34.7 bits (78), Expect = 0.16
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 161 YVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNV-- 218
+ QG + F APP P PA PLQ+ + A Q AA +A A +
Sbjct: 53 FASQGCAQSPFQAAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAA 112
Query: 219 --NPTQPTTSQPLNLAHVPGEEPPPAP 243
P +T L P PPP P
Sbjct: 113 PPAPAAASTVDTAALKQPPAPPPPPPP 139
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 34.7 bits (78), Expect = 0.16
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 161 YVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNV-- 218
+ QG + F APP P PA PLQ+ + A Q AA +A A +
Sbjct: 53 FASQGCAQSPFQAAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAA 112
Query: 219 --NPTQPTTSQPLNLAHVPGEEPPPAP 243
P +T L P PPP P
Sbjct: 113 PPAPAAASTVDTAALKQPPAPPPPPPP 139
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 71 DILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETL 130
+ L Y + ++ T+ +P SSP + A S+N S+ HS ST+P
Sbjct: 576 EALLSSPSYSVTQMIKTATSPSSSPMLDRHTSQQITTAPSTNHSTIHSTSTSPQE----- 630
Query: 131 SLAVGSSSEGLRQRTLPQAQTDQAQS 156
S AV +T ++QT ++ S
Sbjct: 631 SPAVSQRGHTQAPQTTQESQTTRSVS 656
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 90 TPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQA 149
TP + S++ S + +SSS+SSS S S++ SS + S + SSS + PQA
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 2658
Query: 150 QTDQAQSHQFP 160
A + P
Sbjct: 2659 LPKPASPKKPP 2669
Score = 33.5 bits (75), Expect = 0.35
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 89 RTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSS 138
R P +P R S + +SSS+SSS S S++ SS + S + SSS
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2643
Score = 33.5 bits (75), Expect = 0.35
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 91 PPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQ 150
PP + R S + +SSS+SSS S S++ SS + S + SSS P
Sbjct: 2595 PPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
Query: 151 TDQA 154
QA
Sbjct: 2655 GPQA 2658
Score = 31.6 bits (70), Expect = 1.3
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 95 PKSSTNRESHEALAS--------SSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTL 146
P +ST + ALA+ SS+SSS S S++ SS + S + GSSS +L
Sbjct: 2509 PPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Query: 147 P 147
P
Sbjct: 2569 P 2569
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 89 RTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLS 131
R+ SS SS++ S + +SSS+SSS S S++ SS + S
Sbjct: 2606 RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 30.4 bits (67), Expect = 3.0
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPS 124
+S + SS SS++ S + +SSS+SSS S S++PS
Sbjct: 2613 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 29.6 bits (65), Expect = 5.1
Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 30/192 (15%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLS---LAVGSSSEGLRQR 144
SRTPPS+P S + S A + SS S S P + + S A S L +
Sbjct: 2407 SRTPPSAP-SQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQ 2465
Query: 145 TLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQ---MYAHQ 201
T P A + S D+ PG P P QQ + A Q
Sbjct: 2466 TTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQ 2525
Query: 202 YYMQYQAAVSAQATSNVNPTQPTTS--------------------QP-LNLAHVPGEEPP 240
+ +++ S+ ++S+ + + ++S QP + L VP P
Sbjct: 2526 PAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVP--SPT 2583
Query: 241 PAPNLVAQENRP 252
PAP +E RP
Sbjct: 2584 PAPKEAVREGRP 2595
Score = 29.6 bits (65), Expect = 5.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTP 123
+S + SS SS++ S + +SS +SSSD GS+ P
Sbjct: 2533 SSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
Score = 29.6 bits (65), Expect = 5.1
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 89 RTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLS 131
R SS SS++ S + +SSS+SSS S S++ SS + S
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLA 133
S + SS SS++ S + +SSS+SSS S S++ SS + S A
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA 2652
Score = 28.9 bits (63), Expect = 8.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS 125
+S + SS SS++ S + +SSS+SSS S S++ SS
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2645
Score = 28.9 bits (63), Expect = 8.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS 125
+S + SS SS++ S + +SSS+SSS S S++ SS
Sbjct: 2608 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Score = 28.9 bits (63), Expect = 8.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS 125
+S + SS SS++ S + +SSS+SSS S S++ SS
Sbjct: 2609 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 28.9 bits (63), Expect = 8.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS 125
+S + SS SS++ S + +SSS+SSS S S++ SS
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 90 TPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQA 149
T S SS++ S + +SSS+SSS S S++ +E A+ S+S R+ +P
Sbjct: 1030 TSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVPVP-- 1087
Query: 150 QTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYP 184
T P + G+ P Q A P P P
Sbjct: 1088 -TPAPVEVPVPERVAGSPVTPLPEQEASPARPAGP 1121
Score = 32.7 bits (73), Expect = 0.60
Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 35/160 (21%)
Query: 86 CTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRT 145
C+ ST+ + +SSS+SSS S S++ SS E+ S E R
Sbjct: 1017 CSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSS---EDEEEEERPAA 1073
Query: 146 LPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQ 205
LP A + P V+ P + A G PV P
Sbjct: 1074 LPSA---SPPPREVPVPTPAPVEVPVPERVA--GSPVTP--------------------- 1107
Query: 206 YQAAVSAQATSNVNPTQPTTSQPLNLAHVPGEEP--PPAP 243
+ Q S P PT P + P E P PPAP
Sbjct: 1108 ----LPEQEASPARPAGPTEESPPSAPLRPPEPPAGPPAP 1143
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 34.3 bits (77), Expect = 0.21
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLP 147
++T S +SS++ S + SSS+ SS SGS++ S + S GSSS T
Sbjct: 568 NKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSS 627
Query: 148 QAQT 151
+++
Sbjct: 628 SSES 631
Score = 34.3 bits (77), Expect = 0.21
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQR 144
+S + SS SS++ S + +SSS SSS S ST+ SS +++ S SS R R
Sbjct: 579 SSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSR 636
Score = 31.2 bits (69), Expect = 1.8
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSE 139
+S + SS +S++ S + SSS+ SS S S+T S S + SSSE
Sbjct: 578 SSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSE 630
Score = 29.3 bits (64), Expect = 6.7
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 41 LSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHM-----VHLVCTSRTPPSS- 94
L+ + P+ +T++Q G LLP+ K E + VH S+T S
Sbjct: 507 LAVLQPTPQVTQEQ-----GHLLPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSR 561
Query: 95 PKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSS 138
+ ++ ++ + SS+SSS S ST+ SSG + S GSSS
Sbjct: 562 SRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSS---GSSS 602
Score = 28.9 bits (63), Expect = 8.7
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSS-------DHSGSTTPSSGQETLSLAVGSSSE 139
+S + SS SS++ S + +SSS+SSS D S ST+ SS + S G + +
Sbjct: 584 SSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRD 643
Query: 140 GLRQRTLPQAQTD 152
+R++ + + D
Sbjct: 644 RKHRRSVDRKRRD 656
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 33.5 bits (75), Expect = 0.35
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 90 TPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLS--------LAVGSSSEGL 141
TPP+S +++ ++ + +SSS+SSS ++GS +P+ + S + V + S +
Sbjct: 108 TPPASKENNVSQPA----SSSSSSSSSNNGSASPTKTKSGNSSTPGQFQVIQVQNPSGSV 163
Query: 142 RQRTLPQAQTDQAQSHQ 158
+ + +PQ QT + Q Q
Sbjct: 164 QYQVIPQLQTVEGQQIQ 180
>gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1
[Homo sapiens]
Length = 898
Score = 33.5 bits (75), Expect = 0.35
Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 22/199 (11%)
Query: 62 LLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGST 121
LLP+ L+ + + R Q V S+T P P + T + + + +S +H
Sbjct: 298 LLPEALEAQVLPRFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQTQTSPEH---- 353
Query: 122 TPSSGQETLSLAVGSSSEGLRQRTLPQAQTD---QAQSH-QFPYVMQGNVDNQFPGQAAP 177
L L L+Q PQ Q Q Q+H Q P +Q + + Q P
Sbjct: 354 --------LVLQQKQVQPQLQQEAEPQKQVQPQVQPQAHSQGPRQVQLQQEAEPLKQVQP 405
Query: 178 PGFPVYPAFSPLQM-LWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPG 236
P + P Q+ L Q+ Q Y Q +P + QP H
Sbjct: 406 QVQPQAHSQPPRQVQLQLQKQVQTQTYPQVHTQAQPSVQPQEHPPAQVSVQPPEQTH--- 462
Query: 237 EEP--PPAPNLVAQENRPM 253
E+P P +L+A E P+
Sbjct: 463 EQPHTQPQVSLLAPEQTPV 481
>gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1
[Homo sapiens]
Length = 898
Score = 33.5 bits (75), Expect = 0.35
Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 22/199 (11%)
Query: 62 LLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGST 121
LLP+ L+ + + R Q V S+T P P + T + + + +S +H
Sbjct: 298 LLPEALEAQVLPRFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQTQTSPEH---- 353
Query: 122 TPSSGQETLSLAVGSSSEGLRQRTLPQAQTD---QAQSH-QFPYVMQGNVDNQFPGQAAP 177
L L L+Q PQ Q Q Q+H Q P +Q + + Q P
Sbjct: 354 --------LVLQQKQVQPQLQQEAEPQKQVQPQVQPQAHSQGPRQVQLQQEAEPLKQVQP 405
Query: 178 PGFPVYPAFSPLQM-LWWQQMYAHQYYMQYQAAVSAQATSNVNPTQPTTSQPLNLAHVPG 236
P + P Q+ L Q+ Q Y Q +P + QP H
Sbjct: 406 QVQPQAHSQPPRQVQLQLQKQVQTQTYPQVHTQAQPSVQPQEHPPAQVSVQPPEQTH--- 462
Query: 237 EEP--PPAPNLVAQENRPM 253
E+P P +L+A E P+
Sbjct: 463 EQPHTQPQVSLLAPEQTPV 481
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 32.7 bits (73), Expect = 0.60
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLS--LAVGSSSEGLRQR 144
++R PP P + ++ +SSS SS G + S+GQ TL LAVGS++ +R
Sbjct: 37 SARAPPPPPLAPSS-------SSSSGSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASER 89
Query: 145 TLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQML 192
+A ++ + P + PG P P SPL +L
Sbjct: 90 AGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPAS--PRPLPSPLPLL 135
>gi|65288071 tensin 3 [Homo sapiens]
Length = 1445
Score = 32.7 bits (73), Expect = 0.60
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 111 SNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQR-TLPQAQTDQAQSHQFPYVMQGNVDN 169
S+ +S H G P S ETL+ AVG S + + T+ +A S Q + + +
Sbjct: 873 SSPASQHKGGREPRSCPETLTHAVGMSESPIGPKSTMLRADASSTPSFQQAFASSCTISS 932
Query: 170 QFPGQ 174
PGQ
Sbjct: 933 NGPGQ 937
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 32.7 bits (73), Expect = 0.60
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 89 RTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQ 148
R P + P R + A SS+ S H G+ +P GQ L ++EG R + L
Sbjct: 1100 RPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGRRPQALRL 1159
Query: 149 AQTD 152
+ D
Sbjct: 1160 IERD 1163
>gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]
Length = 772
Score = 32.3 bits (72), Expect = 0.79
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 94 SPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQ 153
SP S ++ E + +SSS+SSS + S+ SS E ++ S SE TL + +
Sbjct: 486 SPSSLSSSEGSSSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDSE-----TLDLEEAEG 540
Query: 154 AQSHQFPYVMQGNVDNQFPGQ 174
A +Q Y + Q P Q
Sbjct: 541 AVGYQPEYSKFCRMSYQDPAQ 561
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 32.3 bits (72), Expect = 0.79
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 77 DEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSS 125
D +H +S + SS SS++ S + +SSS+SSS S S++ SS
Sbjct: 141 DPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
Score = 32.3 bits (72), Expect = 0.79
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 87 TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLA 133
TS + SS SS++ S + +SSS+SSS S S++ SS + S +
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194
Score = 31.2 bits (69), Expect = 1.8
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 100 NRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSS 138
NR H + +SSS+SSS S S++ SS + S + SSS
Sbjct: 143 NRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 181
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 91 PPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSS 138
P S +S++ S + +SSS+SSS S S++ SS + S + SSS
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 93 SSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSE 139
SS SS++ S + +SSS+SSS S S++ SS + S + S S+
Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSK 195
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 93 SSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTD 152
SS SS++ S + +SSS+SSS S S++ SS + S + S + + +
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSK 209
Query: 153 QAQSHQ 158
++ H+
Sbjct: 210 DSREHK 215
Score = 29.3 bits (64), Expect = 6.7
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSS 137
+R+ +S SS++ S + +SSS+SSS S S++ SS + S + +S
Sbjct: 143 NRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTS 192
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 32.3 bits (72), Expect = 0.79
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSS-SEGLRQRTL 146
S T S ++TN ES + SS S++ +SGS+T SSG T + + S+ S G T
Sbjct: 335 SSTTSSGASTATNSES--STTSSGASTATNSGSSTTSSGTSTATNSESSTVSSGASTATT 392
Query: 147 PQAQT 151
++ T
Sbjct: 393 SESST 397
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGS-SSEGLRQRTL 146
SRT + ++TN ES + SS S++ +S S+TPSSG T + + S +S G T
Sbjct: 215 SRTTSNGAGTATNSES--STTSSGASTATNSESSTPSSGAGTATNSESSTTSSGAGTATN 272
Query: 147 PQAQT 151
++ T
Sbjct: 273 SESST 277
Score = 30.8 bits (68), Expect = 2.3
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLP 147
S TP S ++TN ES +S +N++++ STT S + ++S G T
Sbjct: 290 SSTPSSGANTATNSES-STTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNS 348
Query: 148 QAQT 151
++ T
Sbjct: 349 ESST 352
Score = 29.3 bits (64), Expect = 6.7
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSS-SEGLRQRTL 146
S TP S ++TN ES + SS ++ +S S+T SSG T++ + S+ S G T
Sbjct: 245 SSTPSSGAGTATNSES--STTSSGAGTATNSESSTVSSGISTVTNSESSTPSSGANTATN 302
Query: 147 PQAQT 151
++ T
Sbjct: 303 SESST 307
Score = 28.9 bits (63), Expect = 8.7
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 73 LRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSL 132
++K + M L+ +S ++ST+ + ++ SS S++ +SGS+ SSG T ++
Sbjct: 3 MQKGNVLLMFGLLLHLEAATNSNETSTSANTGSSVISSGASTATNSGSSVTSSGVSTATI 62
Query: 133 AVGSS 137
+ GSS
Sbjct: 63 S-GSS 66
Score = 28.9 bits (63), Expect = 8.7
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 88 SRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGS-SSEGLRQRTL 146
S T S ++TN ES + SS S+ +S S+TPSSG T + + S +S G T
Sbjct: 260 SSTTSSGAGTATNSES--STVSSGISTVTNSESSTPSSGANTATNSESSTTSSGANTATN 317
Query: 147 PQAQT 151
+ T
Sbjct: 318 SDSST 322
>gi|29789060 hypothetical protein LOC9847 [Homo sapiens]
Length = 1000
Score = 32.3 bits (72), Expect = 0.79
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 87 TSRTPPSSP-KSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRT 145
T + PS+P K+ T S S +SSSD S TP +G + S + EG +
Sbjct: 278 THSSGPSTPLKNQTYSFSPSKSYSRQSSSSDTDLSLTPKTGMGSGS----AGKEGGPFKA 333
Query: 146 LPQAQTDQA-QSHQFPYVMQGNVDNQFPGQAAPPGFPVY 183
L + QT A + +FP+ F A PPGF V+
Sbjct: 334 LLRQQTQSALEQREFPF---------FTLTAFPPGFLVH 363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,847,672
Number of Sequences: 37866
Number of extensions: 880553
Number of successful extensions: 5297
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 4539
Number of HSP's gapped (non-prelim): 575
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.