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Search of human proteins with 188035910
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 390 e-109
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 390 e-109
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 390 e-109
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 238 2e-63
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 238 2e-63
gi|15082258 chromobox homolog 3 [Homo sapiens] 228 2e-60
gi|20544151 chromobox homolog 3 [Homo sapiens] 228 2e-60
gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi... 100 8e-22
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ... 100 8e-22
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ... 100 8e-22
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 72 4e-13
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 70 8e-13
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 67 7e-12
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 65 3e-11
gi|10190682 chromobox homolog 8 [Homo sapiens] 63 1e-10
gi|55770830 chromobox homolog 4 [Homo sapiens] 61 5e-10
gi|46852392 chromobox homolog 6 [Homo sapiens] 59 2e-09
gi|28372505 chromobox homolog 7 [Homo sapiens] 58 4e-09
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 57 1e-08
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 55 5e-08
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 55 5e-08
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 55 5e-08
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 55 5e-08
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 54 6e-08
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 54 6e-08
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 51 7e-07
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 49 3e-06
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 46 2e-05
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 46 2e-05
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 45 4e-05
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 390 bits (1003), Expect = e-109
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
Sbjct: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
Sbjct: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
Query: 181 AENKEKETAKS 191
AENKEKETAKS
Sbjct: 181 AENKEKETAKS 191
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 390 bits (1003), Expect = e-109
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
Sbjct: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
Sbjct: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
Query: 181 AENKEKETAKS 191
AENKEKETAKS
Sbjct: 181 AENKEKETAKS 191
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 390 bits (1003), Expect = e-109
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
Sbjct: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
Sbjct: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
Query: 181 AENKEKETAKS 191
AENKEKETAKS
Sbjct: 181 AENKEKETAKS 191
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 238 bits (608), Expect = 2e-63
Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)
Query: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
Query: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF
Sbjct: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
Query: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
Query: 178 PEDAENKEKE 187
P + ++K+ +
Sbjct: 174 PSEDDDKKDD 183
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP +
Sbjct: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
Query: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
+ F + + T H + K K + S
Sbjct: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 238 bits (608), Expect = 2e-63
Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)
Query: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
Query: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF
Sbjct: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
Query: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
Query: 178 PEDAENKEKE 187
P + ++K+ +
Sbjct: 174 PSEDDDKKDD 183
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP +
Sbjct: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
Query: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
+ F + + T H + K K + S
Sbjct: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 228 bits (582), Expect = 2e-60
Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
MGKK + + EE+VVEKVLDRRVV G+VEY LKWKGF++ NTWEPE+NLDCP
Sbjct: 11 MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70
Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
ELI F+ K KE + KRKS + +DD KSKKKR+ + D RGF RG
Sbjct: 71 ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120
Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 228 bits (582), Expect = 2e-60
Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
MGKK + + EE+VVEKVLDRRVV G+VEY LKWKGF++ NTWEPE+NLDCP
Sbjct: 11 MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70
Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
ELI F+ K KE + KRKS + +DD KSKKKR+ + D RGF RG
Sbjct: 71 ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120
Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
HP1 gamma) [Homo sapiens]
Length = 142
Score = 100 bits (249), Expect = 8e-22
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
Query: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA
Sbjct: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
KEA+++ Q VIAFYEERLTWH PED
Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
sapiens]
Length = 142
Score = 100 bits (249), Expect = 8e-22
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
Query: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA
Sbjct: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
KEA+++ Q VIAFYEERLTWH PED
Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
sapiens]
Length = 142
Score = 100 bits (249), Expect = 8e-22
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
Query: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA
Sbjct: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
KEA+++ Q VIAFYEERLTWH PED
Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK +
Sbjct: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63
Query: 73 MKEGENNKPREKSESNKRKSNFSNSAD--------DIKSKKKREQSN 111
KE +N K ++ RK +S D SK K S+
Sbjct: 64 EKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSS 110
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 70.5 bits (171), Expect = 8e-13
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK +
Sbjct: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63
Query: 73 MKEGENNKPREKSESNKRK 91
KE +N K ++ RK
Sbjct: 64 EKEVQNRKRGKRPRGRPRK 82
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 67.4 bits (163), Expect = 7e-12
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 17 EEEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY-KKM 73
EE Y VE+++D+R KG+ EYL++WKG+ E +TWEPE++L +C E I +F +++ +K
Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
Query: 74 KEGENNKPREKSESNKRK-------SNFSNSA 98
KE + S +N RK SNFS ++
Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTS 95
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 65.5 bits (158), Expect = 3e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 SSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY 70
S + E+ + VEK+LD + G+V Y ++WKG++ + +TWEPE +L DC E++ EF KK
Sbjct: 51 SEEDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKI 110
Query: 71 KKMKEGENNKPREK-------SESNKRKSNFSNSADDIKSKKKREQ 109
+ K K ++ E+N S + +D KKK+++
Sbjct: 111 AENKAKAVRKDIQRLSLNNDIFEANSDSDQQSETKEDTSPKKKKKK 156
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 63.2 bits (152), Expect = 1e-10
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
S+ E + E +L RR+ KG++EYL+KWKG+S++++TWEPE+N+ L++ F ++ ++
Sbjct: 4 SAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERERE 63
Query: 73 MKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARG 116
M E P+++ K F A K E +D ARG
Sbjct: 64 M---ELYGPKKRGPKPK---TFLLKAQAKAKAKTYEFRSDSARG 101
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 61.2 bits (147), Expect = 5e-10
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 17 EEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK---- 72
E + VE + +R+ KG+VEYL+KW+G+S ++NTWEPE+N+ P L+ F + ++
Sbjct: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLM 67
Query: 73 --MKEGENNKP 81
K G KP
Sbjct: 68 GYRKRGPKPKP 78
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 59.3 bits (142), Expect = 2e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
S+ E + E ++ RR+ KG++EYL+KWKG++ +++TWEPE+N+ LI+ F +K ++
Sbjct: 4 SAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERE 63
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 58.2 bits (139), Expect = 4e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
S+ E+ + VE + +RV KG+VEYL+KWKG+ +++TWEPE+++ P L+ + +K ++
Sbjct: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEER 63
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 20 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKN-LDCPELISEF----MKKYKKM 73
Y VE+++D+R KG+ EYL++WKG+ +TWEPE + L C E I EF M K K++
Sbjct: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Query: 74 KEGENN 79
K G+ +
Sbjct: 67 KSGKQS 72
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
[Homo sapiens]
Length = 554
Score = 54.7 bits (130), Expect = 5e-08
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
+E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
K R S + +R+++ S A+ K+ K ++ R R L
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111
>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
a [Homo sapiens]
Length = 540
Score = 54.7 bits (130), Expect = 5e-08
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
+E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
K R S + +R+++ S A+ K+ K ++ R R L
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 54.7 bits (130), Expect = 5e-08
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
+E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
K R S + +R+++ S A+ K+ K ++ R R L
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 54.7 bits (130), Expect = 5e-08
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
+E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
K R S + +R+++ S A+ K+ K ++ R R L
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 54.3 bits (129), Expect = 6e-08
Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
+E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKK 106
K R S + +R+++ S A+ K+ K
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPK 96
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 54.3 bits (129), Expect = 6e-08
Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
+E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKK 106
K R S + +R+++ S A+ K+ K
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPK 96
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 50.8 bits (120), Expect = 7e-07
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 19 EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
++ VE + D + ++ Q YL+KW+G+ + +TWEP +NL C ++ +F K ++
Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLER 95
>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo
sapiens]
Length = 350
Score = 48.5 bits (114), Expect = 3e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 10/54 (18%)
Query: 37 YLLKWKGFSEEHNTWEPEKNLDCPELISEF----------MKKYKKMKEGENNK 80
YL+KWKG+ + NTWEP +NL CP L+ +F +KK K + +NNK
Sbjct: 4 YLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAITPKDNNK 57
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
+GKK A ++ E D +G+++YL+KWKG+S H+TWE E++L
Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQ-- 328
Query: 61 ELISEFMKKYKKMKEGENNKPRE 83
+K K +K+ EN K +E
Sbjct: 329 ------QQKVKGLKKLENFKKKE 345
Score = 28.9 bits (63), Expect = 2.8
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 7 RTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKW--KGFSEEHNTWEPEKNLDCPELIS 64
+ A+ ++ EDEEE L+ R K E + + K EE E E+ P + S
Sbjct: 1022 KVANFATMEDEEE------LEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRS 1075
Query: 65 EFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPE 124
K + + R+ S+ +S +S DD K K+R + + + G
Sbjct: 1076 STKKAQTNDSDSDTESKRQAQRSSASESETEDSDDD-KKPKRRGRPRSVRKDLVEGFTDA 1134
Query: 125 KI 126
+I
Sbjct: 1135 EI 1136
Score = 28.9 bits (63), Expect = 2.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 67 MKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSND 112
MKK +K KE + NK EK S+++ K KK++ +S D
Sbjct: 1388 MKKKQKKKENKENK--EKQMSSRKDKEGDKERKKSKDKKEKPKSGD 1431
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
+GKK A ++ E D +G+++YL+KWKG+S H+TWE E++L
Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQ-- 328
Query: 61 ELISEFMKKYKKMKEGENNKPRE 83
+K K +K+ EN K +E
Sbjct: 329 ------QQKVKGLKKLENFKKKE 345
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 45.1 bits (105), Expect = 4e-05
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 33 GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKS 92
G+++YL+KWKG+S HNTWE E+ L + + MK+ +N K +K + KR
Sbjct: 314 GEIQYLIKWKGWSHIHNTWETEETLK--------QQNVRGMKKLDNYK--KKDQETKRWL 363
Query: 93 NFSNSADDIKSKKKREQSNDIARGFE 118
++ D ++E ++D+ + ++
Sbjct: 364 KNASPEDVEYYNCQQELTDDLHKQYQ 389
Score = 28.1 bits (61), Expect = 4.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 3 KKTKRTADSSSSEDEEEY---------------VVEKVL---DRRVVKGQVEYLLKWKGF 44
++TKR ++S ED E Y +VE+++ +++ G +Y KW+G
Sbjct: 357 QETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGL 416
Query: 45 SEEHNTWE 52
+WE
Sbjct: 417 PYSECSWE 424
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.126 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,337,252
Number of Sequences: 37866
Number of extensions: 321856
Number of successful extensions: 2153
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 449
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.