BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] (191 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 390 e-109 gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 390 e-109 gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 390 e-109 gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 238 2e-63 gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 238 2e-63 gi|15082258 chromobox homolog 3 [Homo sapiens] 228 2e-60 gi|20544151 chromobox homolog 3 [Homo sapiens] 228 2e-60 gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi... 100 8e-22 gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ... 100 8e-22 gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ... 100 8e-22 gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 72 4e-13 gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 70 8e-13 gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 67 7e-12 gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 65 3e-11 gi|10190682 chromobox homolog 8 [Homo sapiens] 63 1e-10 gi|55770830 chromobox homolog 4 [Homo sapiens] 61 5e-10 gi|46852392 chromobox homolog 6 [Homo sapiens] 59 2e-09 gi|28372505 chromobox homolog 7 [Homo sapiens] 58 4e-09 gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 57 1e-08 gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 55 5e-08 gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 55 5e-08 gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 55 5e-08 gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 55 5e-08 gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 54 6e-08 gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 54 6e-08 gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 51 7e-07 gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 49 3e-06 gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 46 2e-05 gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 46 2e-05 gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 45 4e-05 >gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] Length = 191 Score = 390 bits (1003), Expect = e-109 Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP Sbjct: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG Sbjct: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 Query: 181 AENKEKETAKS 191 AENKEKETAKS Sbjct: 181 AENKEKETAKS 191 >gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] Length = 191 Score = 390 bits (1003), Expect = e-109 Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP Sbjct: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG Sbjct: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 Query: 181 AENKEKETAKS 191 AENKEKETAKS Sbjct: 181 AENKEKETAKS 191 >gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] Length = 191 Score = 390 bits (1003), Expect = e-109 Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP Sbjct: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG Sbjct: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 Query: 181 AENKEKETAKS 191 AENKEKETAKS Sbjct: 181 AENKEKETAKS 191 >gi|5803076 heterochromatin protein 1-beta [Homo sapiens] Length = 185 Score = 238 bits (608), Expect = 2e-63 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%) Query: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59 MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 Query: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117 P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF Sbjct: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113 Query: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177 RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y Sbjct: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173 Query: 178 PEDAENKEKE 187 P + ++K+ + Sbjct: 174 PSEDDDKKDD 183 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/88 (22%), Positives = 39/88 (44%) Query: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163 K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP + Sbjct: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63 Query: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191 + F + + T H + K K + S Sbjct: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91 >gi|187960037 heterochromatin protein 1-beta [Homo sapiens] Length = 185 Score = 238 bits (608), Expect = 2e-63 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%) Query: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59 MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 Query: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117 P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF Sbjct: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113 Query: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177 RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y Sbjct: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173 Query: 178 PEDAENKEKE 187 P + ++K+ + Sbjct: 174 PSEDDDKKDD 183 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/88 (22%), Positives = 39/88 (44%) Query: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163 K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP + Sbjct: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63 Query: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191 + F + + T H + K K + S Sbjct: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91 >gi|15082258 chromobox homolog 3 [Homo sapiens] Length = 183 Score = 228 bits (582), Expect = 2e-60 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 MGKK + + EE+VVEKVLDRRVV G+VEY LKWKGF++ NTWEPE+NLDCP Sbjct: 11 MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70 Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 ELI F+ K KE + KRKS + +DD KSKKKR+ + D RGF RG Sbjct: 71 ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120 Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180 >gi|20544151 chromobox homolog 3 [Homo sapiens] Length = 183 Score = 228 bits (582), Expect = 2e-60 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 MGKK + + EE+VVEKVLDRRVV G+VEY LKWKGF++ NTWEPE+NLDCP Sbjct: 11 MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70 Query: 61 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120 ELI F+ K KE + KRKS + +DD KSKKKR+ + D RGF RG Sbjct: 71 ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120 Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180 L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180 >gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila HP1 gamma) [Homo sapiens] Length = 142 Score = 100 bits (249), Expect = 8e-22 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%) Query: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153 F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA Sbjct: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107 Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180 KEA+++ Q VIAFYEERLTWH PED Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139 >gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo sapiens] Length = 142 Score = 100 bits (249), Expect = 8e-22 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%) Query: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153 F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA Sbjct: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107 Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180 KEA+++ Q VIAFYEERLTWH PED Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139 >gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo sapiens] Length = 142 Score = 100 bits (249), Expect = 8e-22 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%) Query: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153 F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA Sbjct: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107 Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180 KEA+++ Q VIAFYEERLTWH PED Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139 >gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] Length = 532 Score = 71.6 bits (174), Expect = 4e-13 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 9/107 (8%) Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72 SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK + Sbjct: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63 Query: 73 MKEGENNKPREKSESNKRKSNFSNSAD--------DIKSKKKREQSN 111 KE +N K ++ RK +S D SK K S+ Sbjct: 64 EKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSS 110 >gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] Length = 211 Score = 70.5 bits (171), Expect = 8e-13 Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%) Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72 SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK + Sbjct: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63 Query: 73 MKEGENNKPREKSESNKRK 91 KE +N K ++ RK Sbjct: 64 EKEVQNRKRGKRPRGRPRK 82 >gi|221307494 chromodomain protein, Y chromosome-like isoform a [Homo sapiens] Length = 544 Score = 67.4 bits (163), Expect = 7e-12 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 10/92 (10%) Query: 17 EEEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY-KKM 73 EE Y VE+++D+R KG+ EYL++WKG+ E +TWEPE++L +C E I +F +++ +K Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63 Query: 74 KEGENNKPREKSESNKRK-------SNFSNSA 98 KE + S +N RK SNFS ++ Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTS 95 >gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] Length = 860 Score = 65.5 bits (158), Expect = 3e-11 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 8/106 (7%) Query: 12 SSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY 70 S + E+ + VEK+LD + G+V Y ++WKG++ + +TWEPE +L DC E++ EF KK Sbjct: 51 SEEDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKI 110 Query: 71 KKMKEGENNKPREK-------SESNKRKSNFSNSADDIKSKKKREQ 109 + K K ++ E+N S + +D KKK+++ Sbjct: 111 AENKAKAVRKDIQRLSLNNDIFEANSDSDQQSETKEDTSPKKKKKK 156 >gi|10190682 chromobox homolog 8 [Homo sapiens] Length = 389 Score = 63.2 bits (152), Expect = 1e-10 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72 S+ E + E +L RR+ KG++EYL+KWKG+S++++TWEPE+N+ L++ F ++ ++ Sbjct: 4 SAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERERE 63 Query: 73 MKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARG 116 M E P+++ K F A K E +D ARG Sbjct: 64 M---ELYGPKKRGPKPK---TFLLKAQAKAKAKTYEFRSDSARG 101 >gi|55770830 chromobox homolog 4 [Homo sapiens] Length = 560 Score = 61.2 bits (147), Expect = 5e-10 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 17 EEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK---- 72 E + VE + +R+ KG+VEYL+KW+G+S ++NTWEPE+N+ P L+ F + ++ Sbjct: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLM 67 Query: 73 --MKEGENNKP 81 K G KP Sbjct: 68 GYRKRGPKPKP 78 >gi|46852392 chromobox homolog 6 [Homo sapiens] Length = 412 Score = 59.3 bits (142), Expect = 2e-09 Identities = 24/60 (40%), Positives = 43/60 (71%) Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72 S+ E + E ++ RR+ KG++EYL+KWKG++ +++TWEPE+N+ LI+ F +K ++ Sbjct: 4 SAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERE 63 >gi|28372505 chromobox homolog 7 [Homo sapiens] Length = 251 Score = 58.2 bits (139), Expect = 4e-09 Identities = 24/60 (40%), Positives = 43/60 (71%) Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72 S+ E+ + VE + +RV KG+VEYL+KWKG+ +++TWEPE+++ P L+ + +K ++ Sbjct: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEER 63 >gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] Length = 506 Score = 57.0 bits (136), Expect = 1e-08 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 6/66 (9%) Query: 20 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKN-LDCPELISEF----MKKYKKM 73 Y VE+++D+R KG+ EYL++WKG+ +TWEPE + L C E I EF M K K++ Sbjct: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66 Query: 74 KEGENN 79 K G+ + Sbjct: 67 KSGKQS 72 >gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b [Homo sapiens] Length = 554 Score = 54.7 bits (130), Expect = 5e-08 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73 +E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+ Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121 K R S + +R+++ S A+ K+ K ++ R R L Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111 >gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform a [Homo sapiens] Length = 540 Score = 54.7 bits (130), Expect = 5e-08 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73 +E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+ Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121 K R S + +R+++ S A+ K+ K ++ R R L Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111 >gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo sapiens] Length = 554 Score = 54.7 bits (130), Expect = 5e-08 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73 +E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+ Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121 K R S + +R+++ S A+ K+ K ++ R R L Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111 >gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo sapiens] Length = 540 Score = 54.7 bits (130), Expect = 5e-08 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73 +E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+ Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121 K R S + +R+++ S A+ K+ K ++ R R L Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111 >gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] Length = 541 Score = 54.3 bits (129), Expect = 6e-08 Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73 +E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+ Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKK 106 K R S + +R+++ S A+ K+ K Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPK 96 >gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] Length = 541 Score = 54.3 bits (129), Expect = 6e-08 Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 18 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73 +E+ VE ++D+R K G +YL++WKG+ ++ +TWEPE++L +C + + +F ++ K+ Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 74 KEGENNKPREKSESNKRKSNFSNSADDIKSKKK 106 K R S + +R+++ S A+ K+ K Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPK 96 >gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] Length = 412 Score = 50.8 bits (120), Expect = 7e-07 Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 19 EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72 ++ VE + D + ++ Q YL+KW+G+ + +TWEP +NL C ++ +F K ++ Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLER 95 >gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] Length = 350 Score = 48.5 bits (114), Expect = 3e-06 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 10/54 (18%) Query: 37 YLLKWKGFSEEHNTWEPEKNLDCPELISEF----------MKKYKKMKEGENNK 80 YL+KWKG+ + NTWEP +NL CP L+ +F +KK K + +NNK Sbjct: 4 YLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAITPKDNNK 57 >gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1 [Homo sapiens] Length = 1828 Score = 45.8 bits (107), Expect = 2e-05 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 +GKK A ++ E D +G+++YL+KWKG+S H+TWE E++L Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQ-- 328 Query: 61 ELISEFMKKYKKMKEGENNKPRE 83 +K K +K+ EN K +E Sbjct: 329 ------QQKVKGLKKLENFKKKE 345 Score = 28.9 bits (63), Expect = 2.8 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%) Query: 7 RTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKW--KGFSEEHNTWEPEKNLDCPELIS 64 + A+ ++ EDEEE L+ R K E + + K EE E E+ P + S Sbjct: 1022 KVANFATMEDEEE------LEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRS 1075 Query: 65 EFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPE 124 K + + R+ S+ +S +S DD K K+R + + + G Sbjct: 1076 STKKAQTNDSDSDTESKRQAQRSSASESETEDSDDD-KKPKRRGRPRSVRKDLVEGFTDA 1134 Query: 125 KI 126 +I Sbjct: 1135 EI 1136 Score = 28.9 bits (63), Expect = 2.8 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 67 MKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSND 112 MKK +K KE + NK EK S+++ K KK++ +S D Sbjct: 1388 MKKKQKKKENKENK--EKQMSSRKDKEGDKERKKSKDKKEKPKSGD 1431 >gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2 [Homo sapiens] Length = 501 Score = 45.8 bits (107), Expect = 2e-05 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Query: 1 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60 +GKK A ++ E D +G+++YL+KWKG+S H+TWE E++L Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQ-- 328 Query: 61 ELISEFMKKYKKMKEGENNKPRE 83 +K K +K+ EN K +E Sbjct: 329 ------QQKVKGLKKLENFKKKE 345 >gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sapiens] Length = 1710 Score = 45.1 bits (105), Expect = 4e-05 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 33 GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKS 92 G+++YL+KWKG+S HNTWE E+ L + + MK+ +N K +K + KR Sbjct: 314 GEIQYLIKWKGWSHIHNTWETEETLK--------QQNVRGMKKLDNYK--KKDQETKRWL 363 Query: 93 NFSNSADDIKSKKKREQSNDIARGFE 118 ++ D ++E ++D+ + ++ Sbjct: 364 KNASPEDVEYYNCQQELTDDLHKQYQ 389 Score = 28.1 bits (61), Expect = 4.8 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 18/68 (26%) Query: 3 KKTKRTADSSSSEDEEEY---------------VVEKVL---DRRVVKGQVEYLLKWKGF 44 ++TKR ++S ED E Y +VE+++ +++ G +Y KW+G Sbjct: 357 QETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGL 416 Query: 45 SEEHNTWE 52 +WE Sbjct: 417 PYSECSWE 424 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.308 0.126 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,337,252 Number of Sequences: 37866 Number of extensions: 321856 Number of successful extensions: 2153 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 122 Number of HSP's that attempted gapping in prelim test: 1730 Number of HSP's gapped (non-prelim): 449 length of query: 191 length of database: 18,247,518 effective HSP length: 96 effective length of query: 95 effective length of database: 14,612,382 effective search space: 1388176290 effective search space used: 1388176290 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.