Guide to the Human Genome
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Search of human proteins with 188035908

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
         (191 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]           390   e-109
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]           390   e-109
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]             390   e-109
gi|5803076 heterochromatin protein 1-beta [Homo sapiens]              238   2e-63
gi|187960037 heterochromatin protein 1-beta [Homo sapiens]            238   2e-63
gi|15082258 chromobox homolog 3 [Homo sapiens]                        228   2e-60
gi|20544151 chromobox homolog 3 [Homo sapiens]                        228   2e-60
gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi...   100   8e-22
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ...   100   8e-22
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ...   100   8e-22
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]               72   4e-13
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]               70   8e-13
gi|221307494 chromodomain protein, Y chromosome-like isoform a [...    67   7e-12
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]                    65   3e-11
gi|10190682 chromobox homolog 8 [Homo sapiens]                         63   1e-10
gi|55770830 chromobox homolog 4 [Homo sapiens]                         61   5e-10
gi|46852392 chromobox homolog 6 [Homo sapiens]                         59   2e-09
gi|28372505 chromobox homolog 7 [Homo sapiens]                         58   4e-09
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]             57   1e-08
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor...    55   5e-08
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo...    55   5e-08
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s...    55   5e-08
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s...    55   5e-08
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]        54   6e-08
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]         54   6e-08
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]      51   7e-07
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens]     49   3e-06
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    46   2e-05
gi|110611184 chromodomain helicase DNA binding protein 2 isoform...    46   2e-05
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...    45   4e-05

>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  390 bits (1003), Expect = e-109
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
Sbjct: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60

Query: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
           ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
Sbjct: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120

Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
           LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180

Query: 181 AENKEKETAKS 191
           AENKEKETAKS
Sbjct: 181 AENKEKETAKS 191


>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  390 bits (1003), Expect = e-109
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
Sbjct: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60

Query: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
           ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
Sbjct: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120

Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
           LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180

Query: 181 AENKEKETAKS 191
           AENKEKETAKS
Sbjct: 181 AENKEKETAKS 191


>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  390 bits (1003), Expect = e-109
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
Sbjct: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60

Query: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
           ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
Sbjct: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120

Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
           LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180

Query: 181 AENKEKETAKS 191
           AENKEKETAKS
Sbjct: 181 AENKEKETAKS 191


>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  238 bits (608), Expect = 2e-63
 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)

Query: 1   MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
           MGKK  K+  +    E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60

Query: 60  PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
           P+LI+EF++  K   E       +KSE  KRK  S+  +  ++ K KKK+E+S    RGF
Sbjct: 61  PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113

Query: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
            RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173

Query: 178 PEDAENKEKE 187
           P + ++K+ +
Sbjct: 174 PSEDDDKKDD 183



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/88 (22%), Positives = 39/88 (44%)

Query: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
           K+ +++  ++    E     EK++      G + +L+KWK   + D     E N+ CP +
Sbjct: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63

Query: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
           +  F + + T H   +    K K  + S
Sbjct: 64  IAEFLQSQKTAHETDKSEGGKRKADSDS 91


>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  238 bits (608), Expect = 2e-63
 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)

Query: 1   MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
           MGKK  K+  +    E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60

Query: 60  PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
           P+LI+EF++  K   E       +KSE  KRK  S+  +  ++ K KKK+E+S    RGF
Sbjct: 61  PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113

Query: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
            RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173

Query: 178 PEDAENKEKE 187
           P + ++K+ +
Sbjct: 174 PSEDDDKKDD 183



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/88 (22%), Positives = 39/88 (44%)

Query: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
           K+ +++  ++    E     EK++      G + +L+KWK   + D     E N+ CP +
Sbjct: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63

Query: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
           +  F + + T H   +    K K  + S
Sbjct: 64  IAEFLQSQKTAHETDKSEGGKRKADSDS 91


>gi|15082258 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  228 bits (582), Expect = 2e-60
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           MGKK    +      + EE+VVEKVLDRRVV G+VEY LKWKGF++  NTWEPE+NLDCP
Sbjct: 11  MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70

Query: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
           ELI  F+   K  KE          +  KRKS   + +DD KSKKKR+ + D  RGF RG
Sbjct: 71  ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120

Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
           L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180


>gi|20544151 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  228 bits (582), Expect = 2e-60
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           MGKK    +      + EE+VVEKVLDRRVV G+VEY LKWKGF++  NTWEPE+NLDCP
Sbjct: 11  MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70

Query: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120
           ELI  F+   K  KE          +  KRKS   + +DD KSKKKR+ + D  RGF RG
Sbjct: 71  ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120

Query: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180
           L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180


>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
           HP1 gamma) [Homo sapiens]
          Length = 142

 Score =  100 bits (249), Expect = 8e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 94  FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
           F   +D  KS+KKR+ + D  RGF  GL+PE++IGATD  G  MFLM+WKD+ EAD +LA
Sbjct: 49  FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107

Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
           KEA+++  Q      VIAFYEERLTWH  PED
Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139


>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
           sapiens]
          Length = 142

 Score =  100 bits (249), Expect = 8e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 94  FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
           F   +D  KS+KKR+ + D  RGF  GL+PE++IGATD  G  MFLM+WKD+ EAD +LA
Sbjct: 49  FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107

Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
           KEA+++  Q      VIAFYEERLTWH  PED
Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139


>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
           sapiens]
          Length = 142

 Score =  100 bits (249), Expect = 8e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 94  FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
           F   +D  KS+KKR+ + D  RGF  GL+PE++IGATD  G  MFLM+WKD+ EAD +LA
Sbjct: 49  FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107

Query: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
           KEA+++  Q      VIAFYEERLTWH  PED
Sbjct: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139


>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
          Length = 532

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 9/107 (8%)

Query: 13  SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
           SS  E+ +  E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+  P L+  F KK + 
Sbjct: 5   SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63

Query: 73  MKEGENNKPREKSESNKRKSNFSNSAD--------DIKSKKKREQSN 111
            KE +N K  ++     RK    +S          D  SK K   S+
Sbjct: 64  EKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSS 110


>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
          Length = 211

 Score = 70.5 bits (171), Expect = 8e-13
 Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
          SS  E+ +  E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+  P L+  F KK + 
Sbjct: 5  SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63

Query: 73 MKEGENNKPREKSESNKRK 91
           KE +N K  ++     RK
Sbjct: 64 EKEVQNRKRGKRPRGRPRK 82


>gi|221307494 chromodomain protein, Y chromosome-like isoform a
          [Homo sapiens]
          Length = 544

 Score = 67.4 bits (163), Expect = 7e-12
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 10/92 (10%)

Query: 17 EEEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY-KKM 73
          EE Y VE+++D+R   KG+ EYL++WKG+  E +TWEPE++L +C E I +F +++ +K 
Sbjct: 4  EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63

Query: 74 KEGENNKPREKSESNKRK-------SNFSNSA 98
          KE    +    S +N RK       SNFS ++
Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTS 95


>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
          Length = 860

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 8/106 (7%)

Query: 12  SSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY 70
           S  + E+ + VEK+LD +   G+V Y ++WKG++ + +TWEPE +L DC E++ EF KK 
Sbjct: 51  SEEDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKI 110

Query: 71  KKMKEGENNKPREK-------SESNKRKSNFSNSADDIKSKKKREQ 109
            + K     K  ++        E+N      S + +D   KKK+++
Sbjct: 111 AENKAKAVRKDIQRLSLNNDIFEANSDSDQQSETKEDTSPKKKKKK 156


>gi|10190682 chromobox homolog 8 [Homo sapiens]
          Length = 389

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 13  SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
           S+  E  +  E +L RR+ KG++EYL+KWKG+S++++TWEPE+N+    L++ F ++ ++
Sbjct: 4   SAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERERE 63

Query: 73  MKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARG 116
           M   E   P+++    K    F   A      K  E  +D ARG
Sbjct: 64  M---ELYGPKKRGPKPK---TFLLKAQAKAKAKTYEFRSDSARG 101


>gi|55770830 chromobox homolog 4 [Homo sapiens]
          Length = 560

 Score = 61.2 bits (147), Expect = 5e-10
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 17 EEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK---- 72
          E  + VE +  +R+ KG+VEYL+KW+G+S ++NTWEPE+N+  P L+  F  + ++    
Sbjct: 8  EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLM 67

Query: 73 --MKEGENNKP 81
             K G   KP
Sbjct: 68 GYRKRGPKPKP 78


>gi|46852392 chromobox homolog 6 [Homo sapiens]
          Length = 412

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 24/60 (40%), Positives = 43/60 (71%)

Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
          S+  E  +  E ++ RR+ KG++EYL+KWKG++ +++TWEPE+N+    LI+ F +K ++
Sbjct: 4  SAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERE 63


>gi|28372505 chromobox homolog 7 [Homo sapiens]
          Length = 251

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 24/60 (40%), Positives = 43/60 (71%)

Query: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
          S+  E+ + VE +  +RV KG+VEYL+KWKG+  +++TWEPE+++  P L+  + +K ++
Sbjct: 4  SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEER 63


>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
          Length = 506

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 6/66 (9%)

Query: 20 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKN-LDCPELISEF----MKKYKKM 73
          Y VE+++D+R   KG+ EYL++WKG+    +TWEPE + L C E I EF    M K K++
Sbjct: 7  YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66

Query: 74 KEGENN 79
          K G+ +
Sbjct: 67 KSGKQS 72


>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
           [Homo sapiens]
          Length = 554

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 18  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
           +E+ VE ++D+R  K G  +YL++WKG+ ++ +TWEPE++L +C + + +F ++   K+ 
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 74  KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
           K       R  S + +R+++ S  A+  K+  K   ++   R   R L
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111


>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
           a [Homo sapiens]
          Length = 540

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 18  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
           +E+ VE ++D+R  K G  +YL++WKG+ ++ +TWEPE++L +C + + +F ++   K+ 
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 74  KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
           K       R  S + +R+++ S  A+  K+  K   ++   R   R L
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111


>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
           sapiens]
          Length = 554

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 18  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
           +E+ VE ++D+R  K G  +YL++WKG+ ++ +TWEPE++L +C + + +F ++   K+ 
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 74  KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
           K       R  S + +R+++ S  A+  K+  K   ++   R   R L
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111


>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
           sapiens]
          Length = 540

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 18  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
           +E+ VE ++D+R  K G  +YL++WKG+ ++ +TWEPE++L +C + + +F ++   K+ 
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 74  KEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGL 121
           K       R  S + +R+++ S  A+  K+  K   ++   R   R L
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKL 111


>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
          Length = 541

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 18  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
           +E+ VE ++D+R  K G  +YL++WKG+ ++ +TWEPE++L +C + + +F ++   K+ 
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 74  KEGENNKPREKSESNKRKSNFSNSADDIKSKKK 106
           K       R  S + +R+++ S  A+  K+  K
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPK 96


>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
          Length = 541

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 18  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY--KKM 73
           +E+ VE ++D+R  K G  +YL++WKG+ ++ +TWEPE++L +C + + +F ++   K+ 
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 74  KEGENNKPREKSESNKRKSNFSNSADDIKSKKK 106
           K       R  S + +R+++ S  A+  K+  K
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPK 96


>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
          Length = 412

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 19 EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
          ++ VE + D + ++ Q  YL+KW+G+ +  +TWEP +NL C  ++ +F K  ++
Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLER 95


>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo
          sapiens]
          Length = 350

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 10/54 (18%)

Query: 37 YLLKWKGFSEEHNTWEPEKNLDCPELISEF----------MKKYKKMKEGENNK 80
          YL+KWKG+ +  NTWEP +NL CP L+ +F          +KK K +   +NNK
Sbjct: 4  YLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAITPKDNNK 57


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 1828

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           +GKK    A ++    E         D    +G+++YL+KWKG+S  H+TWE E++L   
Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQ-- 328

Query: 61  ELISEFMKKYKKMKEGENNKPRE 83
                  +K K +K+ EN K +E
Sbjct: 329 ------QQKVKGLKKLENFKKKE 345



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 7    RTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKW--KGFSEEHNTWEPEKNLDCPELIS 64
            + A+ ++ EDEEE      L+ R  K   E + +   K   EE    E E+    P + S
Sbjct: 1022 KVANFATMEDEEE------LEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRS 1075

Query: 65   EFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPE 124
               K      + +    R+   S+  +S   +S DD K  K+R +   + +    G    
Sbjct: 1076 STKKAQTNDSDSDTESKRQAQRSSASESETEDSDDD-KKPKRRGRPRSVRKDLVEGFTDA 1134

Query: 125  KI 126
            +I
Sbjct: 1135 EI 1136



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 67   MKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSND 112
            MKK +K KE + NK  EK  S+++           K KK++ +S D
Sbjct: 1388 MKKKQKKKENKENK--EKQMSSRKDKEGDKERKKSKDKKEKPKSGD 1431


>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
           [Homo sapiens]
          Length = 501

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60
           +GKK    A ++    E         D    +G+++YL+KWKG+S  H+TWE E++L   
Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQ-- 328

Query: 61  ELISEFMKKYKKMKEGENNKPRE 83
                  +K K +K+ EN K +E
Sbjct: 329 ------QQKVKGLKKLENFKKKE 345


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
           sapiens]
          Length = 1710

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 33  GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKS 92
           G+++YL+KWKG+S  HNTWE E+ L          +  + MK+ +N K  +K +  KR  
Sbjct: 314 GEIQYLIKWKGWSHIHNTWETEETLK--------QQNVRGMKKLDNYK--KKDQETKRWL 363

Query: 93  NFSNSADDIKSKKKREQSNDIARGFE 118
             ++  D      ++E ++D+ + ++
Sbjct: 364 KNASPEDVEYYNCQQELTDDLHKQYQ 389



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 18/68 (26%)

Query: 3   KKTKRTADSSSSEDEEEY---------------VVEKVL---DRRVVKGQVEYLLKWKGF 44
           ++TKR   ++S ED E Y               +VE+++   +++   G  +Y  KW+G 
Sbjct: 357 QETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGL 416

Query: 45  SEEHNTWE 52
                +WE
Sbjct: 417 PYSECSWE 424


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.126    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,337,252
Number of Sequences: 37866
Number of extensions: 321856
Number of successful extensions: 2153
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 449
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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