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Search of human proteins with 187761303
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
(448 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 900 0.0
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 876 0.0
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 870 0.0
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 867 0.0
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 575 e-164
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 570 e-163
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 542 e-154
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 355 6e-98
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 304 9e-83
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 304 9e-83
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 302 4e-82
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 301 8e-82
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 300 2e-81
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 298 5e-81
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 297 1e-80
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 95 1e-19
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 87 4e-17
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 86 9e-17
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 85 1e-16
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 84 3e-16
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 84 3e-16
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 83 4e-16
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 82 1e-15
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 82 1e-15
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 82 1e-15
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 82 1e-15
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 82 1e-15
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 80 3e-15
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 79 1e-14
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 79 1e-14
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 900 bits (2327), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN 180
LPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN
Sbjct: 121 LPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN 180
Query: 181 SKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGM 240
SKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGM
Sbjct: 181 SKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGM 240
Query: 241 FNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAA 300
FNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAA
Sbjct: 241 FNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAA 300
Query: 301 PMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSP 360
PMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSP
Sbjct: 301 PMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSP 360
Query: 361 TAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGFVSFDNPASAQTA 420
TAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGFVSFDNPASAQTA
Sbjct: 361 TAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGFVSFDNPASAQTA 420
Query: 421 IQAMNGFQIGMKRLKVQLKRPKDANRPY 448
IQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 421 IQAMNGFQIGMKRLKVQLKRPKDANRPY 448
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 876 bits (2264), Expect = 0.0
Identities = 447/486 (91%), Positives = 448/486 (92%), Gaps = 38/486 (7%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRG----------EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 170
LPGMNRPIQVKPADSESRG +DRKLFVGMLNKQQSEDDVRRLFEAFGNIEE
Sbjct: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Query: 171 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 230
CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR
Sbjct: 181 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 240
Query: 231 MQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 290
MQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMA
Sbjct: 241 MQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 300
Query: 291 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN 350
ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN
Sbjct: 301 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN 360
Query: 351 GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE---- 406
GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE
Sbjct: 361 GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEG 420
Query: 407 ------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK
Sbjct: 421 CNLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 480
Query: 443 DANRPY 448
DANRPY
Sbjct: 481 DANRPY 486
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 870 bits (2248), Expect = 0.0
Identities = 446/486 (91%), Positives = 447/486 (91%), Gaps = 39/486 (8%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRG----------EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 170
LPGMNRPIQVKPADSESRG +DRKLFVGMLNKQQSEDDVRRLFEAFGNIEE
Sbjct: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Query: 171 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 230
CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR
Sbjct: 181 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 240
Query: 231 MQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 290
MQQMAGQMGMFNPMAIPFGAYGAYAQA MQQQAALMASVAQGGYLNPMAAFAAAQMQQMA
Sbjct: 241 MQQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 299
Query: 291 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN 350
ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN
Sbjct: 300 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN 359
Query: 351 GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE---- 406
GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE
Sbjct: 360 GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEG 419
Query: 407 ------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK
Sbjct: 420 CNLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 479
Query: 443 DANRPY 448
DANRPY
Sbjct: 480 DANRPY 485
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 867 bits (2240), Expect = 0.0
Identities = 445/485 (91%), Positives = 445/485 (91%), Gaps = 38/485 (7%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRG---------EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 171
LPGMNRPIQVKPADSESRG RKLFVGMLNKQQSEDDVRRLFEAFGNIEEC
Sbjct: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
Query: 172 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 231
TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM
Sbjct: 181 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
Query: 232 QQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA 291
QQMAGQMGMFNPMAIPFGAYGAYAQA MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA
Sbjct: 241 QQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA 299
Query: 292 LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG 351
LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG
Sbjct: 300 LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG 359
Query: 352 IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE----- 406
IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE
Sbjct: 360 IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGC 419
Query: 407 -----------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD 443
GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD
Sbjct: 420 NLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD 479
Query: 444 ANRPY 448
ANRPY
Sbjct: 480 ANRPY 484
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 575 bits (1482), Expect = e-164
Identities = 298/469 (63%), Positives = 349/469 (74%), Gaps = 72/469 (15%)
Query: 48 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES 107
MK+ DAIKLF+GQIPR+L+EKDLKP+FE+FG+I+ELTV+KD++TG+HKGCAFLTYC R+S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 108 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGN 167
ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGML KQQ+++DVR++FE FG
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
Query: 168 IEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 227
I+ECT+LRGPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASSSLVVKFADT+KER
Sbjct: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
Query: 228 MRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQ 287
+RRMQQ+A Q+GMF+P+A+ FGAY AY QALMQQQAAL+A A YL+PMA AA QMQ
Sbjct: 181 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSPMATMAAVQMQ 238
Query: 288 QMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAV 347
MAA+N NGL A P+TP+SG STPP I A V +IP+ +GVNG++ +P Q GQPA +A+
Sbjct: 239 HMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDAL 298
Query: 348 FANGIHPYPAQSPTA-ADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMI------ 400
+ NG+HPYPAQSP A DPLQQAYAG+Q Y AAYPAAY ++ AFPQPP ++
Sbjct: 299 YPNGVHPYPAQSPAAPVDPLQQAYAGMQHYT--AAYPAAYSLVAPAFPQPPALVAQQPPP 356
Query: 401 -------------PQQQREG-----------------------FVSF------------- 411
QQQREG FV F
Sbjct: 357 PPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 412 ------------DNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 448
DNPASAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 570 bits (1469), Expect = e-163
Identities = 306/493 (62%), Positives = 349/493 (70%), Gaps = 61/493 (12%)
Query: 5 MATLANGQADNASLSTNGLGSSPGSAG-HMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPR 63
MA G A A LG S +G M+GL+ P +PMKDHDAIKLF+GQIPR
Sbjct: 1 MAAAPGGSAQPAGPGPR-LGFSTADSGVGMSGLNPGPA----VPMKDHDAIKLFVGQIPR 55
Query: 64 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 123
LDE+DLKPLFEEFG+IYELTVLKDR TG+HKGCAFLTYC R+SALKAQSALHEQKTLPG
Sbjct: 56 GLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG 115
Query: 124 MNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKG 183
MNRPIQVKPA SE RGEDRKLFVGML KQQ E+DVRRLF+ FG+IEECT+LR PDG SKG
Sbjct: 116 MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKG 175
Query: 184 CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNP 243
CAFVK+ S EAQAAI LHGS+TM GASSSLVVK ADTD+ER +RRMQQMAG +G F+P
Sbjct: 176 CAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLGAFHP 235
Query: 244 MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMT 303
+P GA GAY A++Q QAAL+A+ AQG L P+AA AAQMQ +AA + L AAP+
Sbjct: 236 APLPLGACGAYTTAILQHQAALLAA-AQGPGLGPVAA-VAAQMQHVAAFS---LVAAPLL 290
Query: 304 PTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAA 363
P + ++PPG +P +P+PIGVNGF L PQ NGQP ++ ++ NG+ PYPAQSP A
Sbjct: 291 PAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVA 350
Query: 364 DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE----------------- 406
DPLQQAYAG+ YA AAYP+AY +S AFPQ P +PQQQRE
Sbjct: 351 DPLQQAYAGMHHYA--AAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFG 408
Query: 407 -------------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLK 435
GFVSFDNP SAQTAIQAMNGFQIGMKRLK
Sbjct: 409 DAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLK 468
Query: 436 VQLKRPKDANRPY 448
VQLKRPKDANRPY
Sbjct: 469 VQLKRPKDANRPY 481
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 542 bits (1396), Expect = e-154
Identities = 290/465 (62%), Positives = 336/465 (72%), Gaps = 58/465 (12%)
Query: 37 SHSPGNPSTIP--MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMH 94
S P P P MKD DAIKLF+GQIPR+LDEKDLKPLFE+FG+IYELTVLKD +TGMH
Sbjct: 26 SSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMH 85
Query: 95 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG-EDRKLFVGMLNKQQ 153
KGCAFLTYC R+SA+KAQ+ALHEQKTLPGM RPIQVKPADSESRG DRKLFVGMLNKQQ
Sbjct: 86 KGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQ 145
Query: 154 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 213
SE+DV RLF+ FG I+ECT+LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASS
Sbjct: 146 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 205
Query: 214 SLVVKFADTDKERTMRRMQQMAGQMGMFNP-MAIPFGAYGAYAQALMQQQAALMASVAQG 272
SLVVKFADTDKERT+RRMQQM GQ+G+ P + +PF Y AYAQALMQQQ ++++ G
Sbjct: 206 SLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLST--SG 263
Query: 273 GYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFT 332
YL+P AF+ +QQ+ A+++NGL A P+ P SG +PP + AVP + +PI NGF
Sbjct: 264 SYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFA 322
Query: 333 GLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQ 391
G+ P G PA E V+ANG+ PYPAQSPT A+ L A++GVQQY A YP AA I+
Sbjct: 323 GVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAH 380
Query: 392 AFPQPPPMIPQQQREG-------------------------------------------- 407
+ PQPPP++ QQQREG
Sbjct: 381 SVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQS 440
Query: 408 ----FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 448
FVSFDNPASAQ AIQAMNGFQIGMKRLKVQLKRPKD PY
Sbjct: 441 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 485
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 355 bits (910), Expect = 6e-98
Identities = 184/287 (64%), Positives = 222/287 (77%), Gaps = 8/287 (2%)
Query: 124 MNRPIQVKPADSESRG-EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 182
M RPIQVKPADSESRG DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+LRGPDG+SK
Sbjct: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
Query: 183 GCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFN 242
GCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM GQ+G+
Sbjct: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
Query: 243 P-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAP 301
P + +PF Y AYAQALMQQQ ++++ G YL+P AF+ +QQ+ A+++NGL A P
Sbjct: 121 PSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAVSLNGLPATP 178
Query: 302 MTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPT 361
+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ PYPAQSPT
Sbjct: 179 IAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPT 237
Query: 362 AADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 407
A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG
Sbjct: 238 VAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 304 bits (779), Expect = 9e-83
Identities = 203/492 (41%), Positives = 266/492 (54%), Gaps = 86/492 (17%)
Query: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
Query: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGM 148
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE EDRKLF+GM
Sbjct: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGM 114
Query: 149 LNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTM 208
++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A+H +QTM
Sbjct: 115 ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 174
Query: 209 PGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMA 267
G SS +VVKFADT K++ +RM QQ+ QM + ++ G L Q AL+
Sbjct: 175 EGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAG--LNTLGPQYLALLQ 232
Query: 268 SVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP----------------T 305
A G LN PM A Q+Q +AAL +AA TP T
Sbjct: 233 QTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSSPLSVLT 291
Query: 306 SGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPAQSPTAA- 363
S GS+P ++ +V I S + G N G A A G+ + T +
Sbjct: 292 SSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGST 351
Query: 364 -DPLQQAYAGVQQYAGPAAYPAAYGQ-------ISQAFPQPPP---------MIPQQQRE 406
+ L QAY+G+QQYA AA P Y Q I A Q +PQ+ +
Sbjct: 352 MEALTQAYSGIQQYAA-AALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGD 410
Query: 407 ------------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLKV 436
GFVS+DNP SAQ AIQ+MNGFQIGMKRLKV
Sbjct: 411 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 470
Query: 437 QLKRPKDANRPY 448
QLKR K+ ++PY
Sbjct: 471 QLKRSKNDSKPY 482
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 304 bits (779), Expect = 9e-83
Identities = 208/500 (41%), Positives = 273/500 (54%), Gaps = 86/500 (17%)
Query: 26 SPGSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
S G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++
Sbjct: 18 SNGTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN 70
Query: 85 VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--E 140
VL+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE E
Sbjct: 71 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE 130
Query: 141 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 200
DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 190
Query: 201 ALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQA 257
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G G Q
Sbjct: 191 AMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQY 250
Query: 258 L-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 316
L + QQA +++ + MA A Q+Q +A L AAA + TS + P T+
Sbjct: 251 LALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTS 309
Query: 317 PAVPSIPSPIGVN--------------------GFTGLPPQANGQPAAEAVFA--NGIHP 354
A+ ++ SP+ + G G N A + A G+
Sbjct: 310 SALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGA 369
Query: 355 YPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPPM--- 399
+ TA D L QAY+G+QQYA AA P Y Q + P+ +
Sbjct: 370 TGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGANLFIY 428
Query: 400 -IPQQQRE------------------------------GFVSFDNPASAQTAIQAMNGFQ 428
+PQ+ + GFVS+DNP SAQ AIQAMNGFQ
Sbjct: 429 HLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQ 488
Query: 429 IGMKRLKVQLKRPKDANRPY 448
IGMKRLKVQLKR K+ ++PY
Sbjct: 489 IGMKRLKVQLKRSKNDSKPY 508
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 302 bits (774), Expect = 4e-82
Identities = 202/493 (40%), Positives = 266/493 (53%), Gaps = 87/493 (17%)
Query: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
Query: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGM 148
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE EDRKLF+GM
Sbjct: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGM 114
Query: 149 LNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTM 208
++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A+H +QTM
Sbjct: 115 ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 174
Query: 209 PGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMA 267
G SS +VVKFADT K++ +RM QQ+ QM + ++ G L Q AL+
Sbjct: 175 EGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAG--LNTLGPQYLALLQ 232
Query: 268 SVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP----------------- 304
A G LN PM A Q+Q +AAL +AA TP
Sbjct: 233 QTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSSPLSVLT 291
Query: 305 TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPAQSPTAA 363
+S GS+P ++ +V I S + G N G A A G+ + T +
Sbjct: 292 SSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGS 351
Query: 364 --DPLQQAYAGVQQYAGPAAYPAAYGQ-------ISQAFPQPPP---------MIPQQQR 405
+ L QAY+G+QQYA AA P Y Q I A Q +PQ+
Sbjct: 352 TMEALTQAYSGIQQYAA-AALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFG 410
Query: 406 E------------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLK 435
+ GFVS+DNP SAQ AIQ+MNGFQIGMKRLK
Sbjct: 411 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 470
Query: 436 VQLKRPKDANRPY 448
VQLKR K+ ++PY
Sbjct: 471 VQLKRSKNDSKPY 483
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 301 bits (771), Expect = 8e-82
Identities = 208/504 (41%), Positives = 273/504 (54%), Gaps = 92/504 (18%)
Query: 28 GSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL
Sbjct: 27 GTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVL 79
Query: 87 KDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDR 142
+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDR
Sbjct: 80 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Query: 143 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 202
KLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI A+
Sbjct: 140 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 199
Query: 203 HGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQAL- 258
H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G G Q L
Sbjct: 200 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 259
Query: 259 MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPA 318
+ QQA +++ + MA A Q+Q +A L AAA + TS + P T+ A
Sbjct: 260 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTSSA 318
Query: 319 VPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE-----AVFAN 350
+ ++ SP+ +N T L N A+ A
Sbjct: 319 LGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNG 378
Query: 351 GIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPP 398
G+ + TA D L QAY+G+QQYA AA P Y Q + P+
Sbjct: 379 GLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGAN 437
Query: 399 M----IPQQQRE------------------------------GFVSFDNPASAQTAIQAM 424
+ +PQ+ + GFVS+DNP SAQ AIQAM
Sbjct: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
Query: 425 NGFQIGMKRLKVQLKRPKDANRPY 448
NGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 498 NGFQIGMKRLKVQLKRSKNDSKPY 521
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 300 bits (768), Expect = 2e-81
Identities = 201/494 (40%), Positives = 267/494 (54%), Gaps = 86/494 (17%)
Query: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
Query: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGM 148
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE EDRKLF+GM
Sbjct: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGM 114
Query: 149 LNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTM 208
++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A+H +QTM
Sbjct: 115 ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 174
Query: 209 PGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAI-----PFGAYGAYAQAL---M 259
G SS +VVKFADT K++ +RM QQ+ QM + ++ G AL +
Sbjct: 175 EGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQL 234
Query: 260 QQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTP--------------- 304
QQ A ++ L+PM A Q+Q +AAL +AA TP
Sbjct: 235 LQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSSPLSV 293
Query: 305 -TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPAQSPTA 362
TS GS+P ++ +V I S + G N G A A G+ + T
Sbjct: 294 LTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTG 353
Query: 363 A--DPLQQAYAGVQQYAGPAAYPAAYGQ-------ISQAFPQPPP---------MIPQQQ 404
+ + L QAY+G+QQYA AA P Y Q I A Q +PQ+
Sbjct: 354 STMEALTQAYSGIQQYAA-AALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEF 412
Query: 405 RE------------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRL 434
+ GFVS+DNP SAQ AIQ+MNGFQIGMKRL
Sbjct: 413 GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 472
Query: 435 KVQLKRPKDANRPY 448
KVQLKR K+ ++PY
Sbjct: 473 KVQLKRSKNDSKPY 486
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 298 bits (764), Expect = 5e-81
Identities = 205/497 (41%), Positives = 269/497 (54%), Gaps = 90/497 (18%)
Query: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
Query: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVG 147
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDRKLF+G
Sbjct: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 113
Query: 148 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 207
M++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI A+H SQT
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 208 MPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQAL-MQQQA 263
M G SS +VVKFADT K++ RR+QQ +A QM N G G Q L + QQA
Sbjct: 174 MEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQA 233
Query: 264 ALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIP 323
+++ + MA A Q+Q +A L AAA + TS + P T+ A+ ++
Sbjct: 234 TSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTSSALGALT 292
Query: 324 SPIGVN--------------------GFTGLPPQAN------GQPAAEAVFANGIHPYPA 357
SP+ + G G N G + A G+
Sbjct: 293 SPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGL 352
Query: 358 QSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPPM----IP 401
+ TA D L QAY+G+QQYA AA P Y Q + P+ + +P
Sbjct: 353 TNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLP 411
Query: 402 QQQRE------------------------------GFVSFDNPASAQTAIQAMNGFQIGM 431
Q+ + GFVS+DNP SAQ AIQAMNGFQIGM
Sbjct: 412 QEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGM 471
Query: 432 KRLKVQLKRPKDANRPY 448
KRLKVQLKR K+ ++PY
Sbjct: 472 KRLKVQLKRSKNDSKPY 488
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 297 bits (761), Expect = 1e-80
Identities = 206/499 (41%), Positives = 270/499 (54%), Gaps = 92/499 (18%)
Query: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
Query: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVG 147
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDRKLF+G
Sbjct: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 113
Query: 148 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 207
M++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI A+H SQT
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 208 MPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQAL-MQQQA 263
M G SS +VVKFADT K++ RR+QQ +A QM N G G Q L + QQA
Sbjct: 174 MEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQA 233
Query: 264 ALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIP 323
+++ + MA A Q+Q +A L AAA + TS + P T+ A+ ++
Sbjct: 234 TSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTSSALGALT 292
Query: 324 SPIG-----------VNGFTGLPP------------QANGQPAAE-----AVFANGIHPY 355
SP+ +N T L N A+ A G+
Sbjct: 293 SPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGAT 352
Query: 356 PAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPPM---- 399
+ TA D L QAY+G+QQYA AA P Y Q + P+ +
Sbjct: 353 GLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYH 411
Query: 400 IPQQQRE------------------------------GFVSFDNPASAQTAIQAMNGFQI 429
+PQ+ + GFVS+DNP SAQ AIQAMNGFQI
Sbjct: 412 LPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQI 471
Query: 430 GMKRLKVQLKRPKDANRPY 448
GMKRLKVQLKR K+ ++PY
Sbjct: 472 GMKRLKVQLKRSKNDSKPY 490
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 95.1 bits (235), Expect = 1e-19
Identities = 100/364 (27%), Positives = 152/364 (41%), Gaps = 35/364 (9%)
Query: 46 IPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCER 105
I ++ DA +++G + + E L LF + G + + KDR TG H+G F+ +
Sbjct: 6 ISERNQDAT-VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 106 ESALKAQSALHEQKTLPGMNRPIQVKPADSESRGED--RKLFVGMLNKQQSEDDVRRLFE 163
E A A+ + +PI+V A + ++ D +F+G L+ + E + F
Sbjct: 65 ED---ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 164 AFGNI-EECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 221
AFG I + I+R PD GNSKG AF+ ++S + AAI A++G + + V +A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAF 178
Query: 222 TDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAF 281
+ R + NP++ + +A A A + G L P
Sbjct: 179 KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP---- 234
Query: 282 AAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQ 341
+ G P+ P G+ PPGI PA+P P P G G PP A G
Sbjct: 235 --------PGMPPPGSFPPPVPPP--GALPPGI-PPAMPPPPMPPGAAGHG--PPSA-GT 280
Query: 342 PAAEAVFANGIHPYPAQSPTAADP----LQQAYAGVQQYAGPAAYPAAYGQISQAFPQPP 397
P A HP+P P +Q A+ G P A P G Q P+PP
Sbjct: 281 PGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG--GQPPPRPP 338
Query: 398 PMIP 401
P +P
Sbjct: 339 PGMP 342
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 86.7 bits (213), Expect = 4e-17
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Query: 23 LGSSPGSAGHMNG---LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGK 79
L + P NG ++++ +P + L + +P+N+ +++LK LF G+
Sbjct: 5 LSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE 64
Query: 80 IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 139
I +++D+ TG G F+ Y + + A KA + L+ + + +P+ + R
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR- 123
Query: 140 EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAA 198
D L+V L K ++ ++ +LF +G I IL G S+G F+++ EA+ A
Sbjct: 124 -DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 199 INALHGSQTMPGASSSLVVKFADTDKERT 227
I L+G Q PGA+ + VKFA+ ++T
Sbjct: 183 IKGLNG-QKPPGATEPITVKFANNPSQKT 210
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A+ AI +NG ++ K +KV RP A+
Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 32.7 bits (73), Expect = 0.68
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 26 SPGSAGHMNGLS--HSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL 83
SP + M L+ + PG+P T +F+ + + DE L +F FG + +
Sbjct: 253 SPMTIDGMTSLAGINIPGHPGT-------GWCIFVYNLAPDADESILWQMFGPFGAVTNV 305
Query: 84 TVLKDRFTGMHKGCAFLTYCERESALKAQSALH 116
V++D T KG F+T + A A ++L+
Sbjct: 306 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 320 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 85.5 bits (210), Expect = 9e-17
Identities = 93/421 (22%), Positives = 169/421 (40%), Gaps = 64/421 (15%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 17 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 76
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKL 144
+++D+ TG G F+ Y + + A KA + L+ + + +P+ + R D L
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR--DANL 134
Query: 145 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALH 203
+V L K ++ ++ +LF +G I IL G S+G F+++ EA+ AI L+
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 204 GSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQA 263
G Q GA+ + VKFA+ +++ +QAL+ Q
Sbjct: 195 G-QKPSGATEPITVKFANNPSQKS---------------------------SQALLSQLY 226
Query: 264 ALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIP 323
G + F + M A + L + P+ P+ + PP + + +
Sbjct: 227 QSPNRRYPGPLHHQAQRFRLDNLLNM-AYGVKRLMSGPVPPS---ACPPRFSPITIDGMT 282
Query: 324 SPIGVN--GFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAA 381
S +G+N G TG +F + P +S + Q GP
Sbjct: 283 SLVGMNIPGHTG---------TGWCIFVYNLSPDSDESV------------LWQLFGP-- 319
Query: 382 YPAAYGQISQAFPQPPPMIPQQQREGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRP 441
+G ++ + + GFV+ N A AI ++NG+++G + L+V K
Sbjct: 320 ----FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 375
Query: 442 K 442
K
Sbjct: 376 K 376
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A+ AI +NG ++ K +KV RP A+
Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 85.1 bits (209), Expect = 1e-16
Identities = 95/397 (23%), Positives = 161/397 (40%), Gaps = 72/397 (18%)
Query: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 109
D L + +P+N+ + + K LF G I +++D+ TG G F+ Y + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 110 KAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIE 169
KA + L+ K + +P+ + R D L+V L K S+ ++ +LF +G I
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMSQKEMEQLFSQYGRII 152
Query: 170 ECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTM 228
IL G S+G F+++ EA+ AI L+G + + GA+ + VKFA+ ++T
Sbjct: 153 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT- 210
Query: 229 RRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQ 288
QAL+ L S A+ Y P+ Q Q+
Sbjct: 211 --------------------------GQALLTH---LYQSSAR-RYAGPL----HHQTQR 236
Query: 289 MAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEA-- 346
N+ +A +P S + + SPI ++G +GL AA A
Sbjct: 237 FRLDNLLNMAYGVKSPLS------------LIARFSPIAIDGMSGLAGVGLSGGAAGAGW 284
Query: 347 -VFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQR 405
+F + P +S + Q GP +G ++ + +
Sbjct: 285 CIFVYNLSPEADESV------------LWQLFGP------FGAVTNVKVIRDFTTNKCKG 326
Query: 406 EGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 327 FGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 13 ADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKP 72
AD A + NGL + + S PS+ ++D + L++ +P+ + +K+++
Sbjct: 93 ADKAINTLNGLKLQTKT------IKVSYARPSSASIRDAN---LYVSGLPKTMSQKEMEQ 143
Query: 73 LFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 132
LF ++G+I +L D+ TG+ +G F+ + +R A +A L+ QK L G PI VK
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
Query: 133 ADSESR 138
A++ S+
Sbjct: 203 ANNPSQ 208
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A AI +NG ++ K +KV RP A+
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 83.6 bits (205), Expect = 3e-16
Identities = 86/332 (25%), Positives = 139/332 (41%), Gaps = 83/332 (25%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKD---------HDAIKLFIGQIPRNLDEKDLKPLFE 75
S P + G+ G S SP P+++ DA +F Q+ + +DL+ F
Sbjct: 128 SPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFS 187
Query: 76 EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA---------------QSALHEQKT 120
GK+ ++ ++ DR + KG A++ +CE +S A Q++ E+
Sbjct: 188 AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 247
Query: 121 LPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-G 179
L M +Q + G +L+VG L+ +ED +R +FE FG I+ +++ D G
Sbjct: 248 LAAMANNLQ------KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG 301
Query: 180 NSKGCAFVKYSSHAEAQAAINALHG-------------SQTMPGASSSLVVKFADTDKER 226
SKG F+ +S A+ A+ L+G ++ + G + + F D D+E
Sbjct: 302 RSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD---ITFPDGDQE- 357
Query: 227 TMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGG--YLNPMAAFAAA 284
+ G+ G Q LMA +A+G L AA AAA
Sbjct: 358 -------------------LDLGSAGGRFQ--------LMAKLAEGAGIQLPSTAAAAAA 390
Query: 285 QMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 316
Q AAL +NG A P+ G P +TA
Sbjct: 391 AAAQAAALQLNG--AVPL----GALNPAALTA 416
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 83.6 bits (205), Expect = 3e-16
Identities = 86/332 (25%), Positives = 139/332 (41%), Gaps = 83/332 (25%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKD---------HDAIKLFIGQIPRNLDEKDLKPLFE 75
S P + G+ G S SP P+++ DA +F Q+ + +DL+ F
Sbjct: 112 SPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFS 171
Query: 76 EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA---------------QSALHEQKT 120
GK+ ++ ++ DR + KG A++ +CE +S A Q++ E+
Sbjct: 172 AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 231
Query: 121 LPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-G 179
L M +Q + G +L+VG L+ +ED +R +FE FG I+ +++ D G
Sbjct: 232 LAAMANNLQ------KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG 285
Query: 180 NSKGCAFVKYSSHAEAQAAINALHG-------------SQTMPGASSSLVVKFADTDKER 226
SKG F+ +S A+ A+ L+G ++ + G + + F D D+E
Sbjct: 286 RSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD---ITFPDGDQE- 341
Query: 227 TMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGG--YLNPMAAFAAA 284
+ G+ G Q LMA +A+G L AA AAA
Sbjct: 342 -------------------LDLGSAGGRFQ--------LMAKLAEGAGIQLPSTAAAAAA 374
Query: 285 QMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 316
Q AAL +NG A P+ G P +TA
Sbjct: 375 AAAQAAALQLNG--AVPL----GALNPAALTA 400
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 83.2 bits (204), Expect = 4e-16
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 109
D L + +P+N+ + + K LF G I +++D+ TG G F+ Y + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 110 KAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIE 169
KA + L+ K + +P+ + R D L+V L K S+ ++ +LF +G I
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMSQKEMEQLFSQYGRII 152
Query: 170 ECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 227
IL G S+G F+++ EA+ AI L+G + + GA+ + VKFA+ ++T
Sbjct: 153 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 13 ADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKP 72
AD A + NGL + + S PS+ ++D + L++ +P+ + +K+++
Sbjct: 93 ADKAINTLNGLKLQTKT------IKVSYARPSSASIRDAN---LYVSGLPKTMSQKEMEQ 143
Query: 73 LFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 132
LF ++G+I +L D+ TG+ +G F+ + +R A +A L+ QK L G PI VK
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
Query: 133 ADSESR 138
A++ S+
Sbjct: 203 ANNPSQ 208
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A AI +NG ++ K +KV RP A+
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 32.3 bits (72), Expect = 0.89
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 116 H 116
+
Sbjct: 339 N 339
Score = 30.4 bits (67), Expect = 3.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 321 GFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 82.0 bits (201), Expect = 1e-15
Identities = 53/208 (25%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 20 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 79
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKL 144
+++D+ TG G F+ Y + + A KA + L+ + + +P+ + R D L
Sbjct: 80 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR--DANL 137
Query: 145 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALH 203
+V L K ++ ++ +LF +G I IL G S+G F+++ EA+ AI L+
Sbjct: 138 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 197
Query: 204 GSQTMPGASSSLVVKFADTDKERTMRRM 231
G Q GA+ + VKFA+ +++ + +
Sbjct: 198 G-QKPSGATEPITVKFANNPSQKSSQAL 224
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A+ AI +NG ++ K +KV RP A+
Sbjct: 93 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 131
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 116 H 116
+
Sbjct: 348 N 348
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 330 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 365
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 82.0 bits (201), Expect = 1e-15
Identities = 53/208 (25%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 17 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 76
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKL 144
+++D+ TG G F+ Y + + A KA + L+ + + +P+ + R D L
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR--DANL 134
Query: 145 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALH 203
+V L K ++ ++ +LF +G I IL G S+G F+++ EA+ AI L+
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 204 GSQTMPGASSSLVVKFADTDKERTMRRM 231
G Q GA+ + VKFA+ +++ + +
Sbjct: 195 G-QKPSGATEPITVKFANNPSQKSSQAL 221
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A+ AI +NG ++ K +KV RP A+
Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 116 H 116
+
Sbjct: 345 N 345
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 327 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 82.0 bits (201), Expect = 1e-15
Identities = 53/208 (25%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 34 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 93
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKL 144
+++D+ TG G F+ Y + + A KA + L+ + + +P+ + R D L
Sbjct: 94 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR--DANL 151
Query: 145 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALH 203
+V L K ++ ++ +LF +G I IL G S+G F+++ EA+ AI L+
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 204 GSQTMPGASSSLVVKFADTDKERTMRRM 231
G Q GA+ + VKFA+ +++ + +
Sbjct: 212 G-QKPSGATEPITVKFANNPSQKSSQAL 238
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A+ AI +NG ++ K +KV RP A+
Sbjct: 107 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 145
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 116 H 116
+
Sbjct: 362 N 362
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 344 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 379
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 82.0 bits (201), Expect = 1e-15
Identities = 53/208 (25%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 17 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 76
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKL 144
+++D+ TG G F+ Y + + A KA + L+ + + +P+ + R D L
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR--DANL 134
Query: 145 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALH 203
+V L K ++ ++ +LF +G I IL G S+G F+++ EA+ AI L+
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 204 GSQTMPGASSSLVVKFADTDKERTMRRM 231
G Q GA+ + VKFA+ +++ + +
Sbjct: 195 G-QKPSGATEPITVKFANNPSQKSSQAL 221
Score = 35.8 bits (81), Expect = 0.081
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
GFV++ +P A+ AI +NG ++ K +KV RP A+
Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 116 H 116
+
Sbjct: 345 N 345
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 327 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 81.6 bits (200), Expect = 1e-15
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 27/195 (13%)
Query: 14 DNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPL 73
D A S +G G PG ++ L P + ++F+ I + E L+
Sbjct: 2 DEAGSSASGGGFRPG----VDSLDEPPNS------------RIFL-VISKYTPESVLRER 44
Query: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133
F FG I ++ V++D+ T KG AF+ + A +A +H Q P +PI+V A
Sbjct: 45 FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104
Query: 134 DSESRGEDR--------KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGC 184
S S G R ++FV M+ K +E+D+R F+ +G+IE C+I++ G SKG
Sbjct: 105 QSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163
Query: 185 AFVKYSSHAEAQAAI 199
+V+Y ++A AI
Sbjct: 164 GYVRYLKPSQAAQAI 178
Score = 52.4 bits (124), Expect = 8e-07
Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 48/270 (17%)
Query: 36 LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95
++ S + S ++D + ++F+ IP++ E+DL+ F+ +G I +++K++ TG K
Sbjct: 103 IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
Query: 96 GCAFLTYCERESALKA------------------QSALHEQKTLPGMNRP-------IQV 130
G ++ Y + A +A S EQ M + + +
Sbjct: 162 GLGYVRYLKPSQAAQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNM 221
Query: 131 KPAD----------SESRGEDR--KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD 178
P + ++SRG++ K + +E+ + +F+ +E C + R P
Sbjct: 222 FPFEQQSEFSSFDKNDSRGQEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPY 281
Query: 179 GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT--MRRM--QQM 234
N G V+Y + A A A LHG Q PG + + V F D T +R+M Q +
Sbjct: 282 SNY-GHGVVQYFNVASAIYAKYKLHGFQYPPG--NRIGVSFIDDGSNATDLLRKMATQMV 338
Query: 235 AGQMGMF---NPMAIPFGAYGAYAQALMQQ 261
A Q+ NP F +G + + + Q
Sbjct: 339 AAQLASMVWNNPSQQQFMQFGGSSGSQLPQ 368
Score = 40.4 bits (93), Expect = 0.003
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 134 DSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSH 192
DS + ++F+ +++K E +R F FG+I++ ++R SKG AFVK++
Sbjct: 18 DSLDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARS 76
Query: 193 AEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 232
++A A+ +HG P + + V A + + R ++
Sbjct: 77 SQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
Score = 32.3 bits (72), Expect = 0.89
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 131 KPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYS 190
K A +E+ ++R LF+ D + +F FGN+ E ++ G K + KY+
Sbjct: 380 KKAPAETPVKER-LFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSG-----KNVGYAKYA 433
Query: 191 SHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 232
A AI LHG + + G L V AD+ +E + +R +
Sbjct: 434 DRISANDAIATLHG-KILNGV--RLKVMLADSPREESNKRQR 472
Score = 29.3 bits (64), Expect = 7.6
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 102
P+ P+K+ +LFI P L L+ +F FG + E+ ++ + G K Y
Sbjct: 383 PAETPVKE----RLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAK------Y 432
Query: 103 CERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLF 145
+R SA A + LH K L G+ + + + E + ++ +
Sbjct: 433 ADRISANDAIATLH-GKILNGVRLKVMLADSPREESNKRQRTY 474
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 80.5 bits (197), Expect = 3e-15
Identities = 78/299 (26%), Positives = 128/299 (42%), Gaps = 74/299 (24%)
Query: 49 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108
++ DA +F Q+ + +DL+ F GK+ ++ ++ DR + KG A++ +CE +S
Sbjct: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
Query: 109 LKA---------------QSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQ 153
A Q++ E+ L M +Q + G +L+VG L+
Sbjct: 187 PLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ------KGNGGPMRLYVGSLHFNI 240
Query: 154 SEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG-------- 204
+ED +R +FE FG I+ +++ D G SKG F+ +S A+ A+ L+G
Sbjct: 241 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 300
Query: 205 -----SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALM 259
++ + G + + F D D+E + G+ G Q
Sbjct: 301 RVGHVTERLDGGTD---ITFPDGDQE--------------------LDLGSAGGRFQ--- 334
Query: 260 QQQAALMASVAQGG--YLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 316
LMA +A+G L AA AAA Q AAL +NG A P+ G P +TA
Sbjct: 335 -----LMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNG--AVPL----GALNPAALTA 382
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 78.6 bits (192), Expect = 1e-14
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 16/178 (8%)
Query: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
++F+G+IPR+L E +L PLFE+ G I++L ++ D +G ++G AF+T+C +E+A +A
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE---- 170
+ PG + + + A++ +LFVG + K ++++++ F + E
Sbjct: 125 CDSYEIRPGKHLGVCISVANN-------RLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
Query: 171 CTILRGPDGNSK--GCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVKFADTDKE 225
+ PD K G F++Y H + AQA + G + G + + V++AD +E
Sbjct: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEE 233
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LKDRFT-------GMHKGCAFLTYCERE 106
+LF+G IP+N K + + EEF K+ LT L D ++G FL Y + +
Sbjct: 146 RLFVGSIPKN---KTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHK 202
Query: 107 SALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLNKQQSEDDVRRL 161
SA +A+ L K N V+ D E + + LFV L +E+ + +
Sbjct: 203 SAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKS 262
Query: 162 FEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 221
F FG +E L K AFV + A A++ ++G + + G +V+
Sbjct: 263 FSEFGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGKE-IEGEEIEIVLA-KP 313
Query: 222 TDKERTMRRMQQMAGQ 237
DK+R R+ + A +
Sbjct: 314 PDKKRKERQAARQASR 329
Score = 38.9 bits (89), Expect = 0.010
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 139 GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQA 197
G ++FVG + + ED++ LFE G I + ++ P G ++G AF+ + AQ
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 198 AINALHGSQTMPGASSSLVVKFAD 221
A+ + PG + + A+
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVAN 144
Score = 28.9 bits (63), Expect = 9.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 408 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 446
FV F++ +A A+ MNG +I + +++ L +P D R
Sbjct: 280 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKR 318
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 78.6 bits (192), Expect = 1e-14
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 16/178 (8%)
Query: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
++F+G+IPR+L E +L PLFE+ G I++L ++ D +G ++G AF+T+C +E+A +A
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE---- 170
+ PG + + + A++ +LFVG + K ++++++ F + E
Sbjct: 226 CDSYEIRPGKHLGVCISVANN-------RLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 278
Query: 171 CTILRGPDGNSK--GCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVKFADTDKE 225
+ PD K G F++Y H + AQA + G + G + + V++AD +E
Sbjct: 279 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEE 334
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LKDRFT-------GMHKGCAFLTYCERE 106
+LF+G IP+N K + + EEF K+ LT L D ++G FL Y + +
Sbjct: 247 RLFVGSIPKN---KTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHK 303
Query: 107 SALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLNKQQSEDDVRRL 161
SA +A+ L K N V+ D E + + LFV L +E+ + +
Sbjct: 304 SAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKS 363
Query: 162 FEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 221
F FG +E L K AFV + A A++ ++G + + G +V+
Sbjct: 364 FSEFGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGKE-IEGEEIEIVLA-KP 414
Query: 222 TDKERTMRRMQQMAGQ 237
DK+R R+ + A +
Sbjct: 415 PDKKRKERQAARQASR 430
Score = 38.9 bits (89), Expect = 0.010
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 139 GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQA 197
G ++FVG + + ED++ LFE G I + ++ P G ++G AF+ + AQ
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 198 AINALHGSQTMPGASSSLVVKFAD 221
A+ + PG + + A+
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVAN 245
Score = 28.9 bits (63), Expect = 9.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 408 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 446
FV F++ +A A+ MNG +I + +++ L +P D R
Sbjct: 381 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKR 419
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,353,008
Number of Sequences: 37866
Number of extensions: 946468
Number of successful extensions: 7375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 483
Number of HSP's that attempted gapping in prelim test: 5383
Number of HSP's gapped (non-prelim): 2049
length of query: 448
length of database: 18,247,518
effective HSP length: 106
effective length of query: 342
effective length of database: 14,233,722
effective search space: 4867932924
effective search space used: 4867932924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.