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Search of human proteins with 187761301
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
(484 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 980 0.0
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 972 0.0
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 967 0.0
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 867 0.0
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 625 e-179
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 620 e-178
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 602 e-172
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 358 5e-99
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 358 8e-99
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 357 2e-98
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 355 7e-98
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 355 7e-98
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 352 4e-97
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 351 1e-96
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 347 2e-95
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 89 9e-18
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 82 1e-15
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 82 1e-15
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 82 1e-15
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 80 4e-15
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 79 1e-14
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 79 1e-14
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 79 1e-14
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 77 3e-14
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 77 3e-14
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 77 3e-14
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 77 3e-14
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 77 3e-14
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 75 1e-13
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 75 1e-13
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 980 bits (2533), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
LPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC
Sbjct: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
Query: 181 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM
Sbjct: 181 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
Query: 241 QQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 300
QQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL
Sbjct: 241 QQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 300
Query: 301 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGI 360
NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGI
Sbjct: 301 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGI 360
Query: 361 HPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCN 420
HPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCN
Sbjct: 361 HPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCN 420
Query: 421 LFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDA 480
LFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDA
Sbjct: 421 LFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDA 480
Query: 481 NRPY 484
NRPY
Sbjct: 481 NRPY 484
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 972 bits (2513), Expect = 0.0
Identities = 483/485 (99%), Positives = 483/485 (99%), Gaps = 1/485 (0%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSH-RKLFVGMLNKQQSEDDVRRLFEAFGNIEE 179
LPGMNRPIQVKPADSESRGGSSCLRQPPS RKLFVGMLNKQQSEDDVRRLFEAFGNIEE
Sbjct: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Query: 180 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 239
CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR
Sbjct: 181 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 240
Query: 240 MQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA 299
MQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA
Sbjct: 241 MQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA 300
Query: 300 LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG 359
LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG
Sbjct: 301 LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG 360
Query: 360 IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGC 419
IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGC
Sbjct: 361 IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGC 420
Query: 420 NLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD 479
NLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD
Sbjct: 421 NLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD 480
Query: 480 ANRPY 484
ANRPY
Sbjct: 481 ANRPY 485
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 967 bits (2501), Expect = 0.0
Identities = 483/486 (99%), Positives = 483/486 (99%), Gaps = 2/486 (0%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSH-RKLFVGMLNKQQSEDDVRRLFEAFGNIEE 179
LPGMNRPIQVKPADSESRGGSSCLRQPPS RKLFVGMLNKQQSEDDVRRLFEAFGNIEE
Sbjct: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Query: 180 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 239
CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR
Sbjct: 181 CTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRR 240
Query: 240 MQQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 298
MQQMAGQMGMFNPMAIPFGAYGAYAQA MQQQAALMASVAQGGYLNPMAAFAAAQMQQMA
Sbjct: 241 MQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMA 300
Query: 299 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN 358
ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN
Sbjct: 301 ALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFAN 360
Query: 359 GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEG 418
GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEG
Sbjct: 361 GIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEG 420
Query: 419 CNLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 478
CNLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK
Sbjct: 421 CNLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 480
Query: 479 DANRPY 484
DANRPY
Sbjct: 481 DANRPY 486
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 867 bits (2240), Expect = 0.0
Identities = 445/485 (91%), Positives = 445/485 (91%), Gaps = 38/485 (7%)
Query: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ
Sbjct: 1 MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQ 60
Query: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 121 LPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
LPGMNRPIQVKPADSESRG RKLFVGMLNKQQSEDDVRRLFEAFGNIEEC
Sbjct: 121 LPGMNRPIQVKPADSESRG---------EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 171
Query: 181 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM
Sbjct: 172 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 231
Query: 241 QQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA 299
QQMAGQMGMFNPMAIPFGAYGAYAQA MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA
Sbjct: 232 QQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAA 291
Query: 300 LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG 359
LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG
Sbjct: 292 LNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANG 351
Query: 360 IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGC 419
IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE
Sbjct: 352 IHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQRE----- 406
Query: 420 NLFIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD 479
GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD
Sbjct: 407 -----------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKD 443
Query: 480 ANRPY 484
ANRPY
Sbjct: 444 ANRPY 448
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 625 bits (1612), Expect = e-179
Identities = 317/478 (66%), Positives = 374/478 (78%), Gaps = 54/478 (11%)
Query: 48 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES 107
MK+ DAIKLF+GQIPR+L+EKDLKP+FE+FG+I+ELTV+KD++TG+HKGCAFLTYC R+S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 108 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDV 167
ALKAQSALHEQKTLPGMNRPIQVKPADSESRG RKLFVGML KQQ+++DV
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKPADSESRG---------EDRKLFVGMLGKQQTDEDV 111
Query: 168 RRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVK 227
R++FE FG I+ECT+LRGPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASSSLVVK
Sbjct: 112 RKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVK 171
Query: 228 FADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNPM 286
FADT+KER +RRMQQ+A Q+GMF+P+A+ FGAY AY QA MQQQAAL+A A YL+PM
Sbjct: 172 FADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSPM 229
Query: 287 AAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA 346
A AA QMQ MAA+N NGL A P+TP+SG STPP I A V +IP+ +GVNG++ +P Q
Sbjct: 230 ATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQP 289
Query: 347 NGQPAAEAVFANGIHPYPAQSPTA-ADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPP 405
GQPA +A++ NG+HPYPAQSP A DPLQQAYAG+Q Y AAYPAAY ++ AFPQPP
Sbjct: 290 TGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYT--AAYPAAYSLVAPAFPQPP 347
Query: 406 PMI-------------------PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP----- 441
++ QQQREGP+GCN+FIYHLPQEF D+E++QMF+P
Sbjct: 348 ALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVI 407
Query: 442 ---------------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
FGFVSFDNPASAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 408 SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 620 bits (1600), Expect = e-178
Identities = 326/501 (65%), Positives = 369/501 (73%), Gaps = 41/501 (8%)
Query: 5 MATLANGQADNASLSTNGLGSSPGSAG-HMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPR 63
MA G A A LG S +G M+GL+ P +PMKDHDAIKLF+GQIPR
Sbjct: 1 MAAAPGGSAQPAGPGPR-LGFSTADSGVGMSGLNPGPA----VPMKDHDAIKLFVGQIPR 55
Query: 64 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 123
LDE+DLKPLFEEFG+IYELTVLKDR TG+HKGCAFLTYC R+SALKAQSALHEQKTLPG
Sbjct: 56 GLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG 115
Query: 124 MNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 183
MNRPIQVKPA SE RG RKLFVGML KQQ E+DVRRLF+ FG+IEECT+L
Sbjct: 116 MNRPIQVKPAASEGRG---------EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 166
Query: 184 RGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQM 243
R PDG SKGCAFVK+ S EAQAAI LHGS+TM GASSSLVVK ADTD+ER +RRMQQM
Sbjct: 167 RSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQM 226
Query: 244 AGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMN 303
AG +G F+P +P GA GAY A+ Q A + + AQG L P+AA AAQMQ +AA +
Sbjct: 227 AGHLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAA-VAAQMQHVAAFS-- 283
Query: 304 GLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPY 363
L AAP+ P + ++PPG +P +P+PIGVNGF L PQ NGQP ++ ++ NG+ PY
Sbjct: 284 -LVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPY 342
Query: 364 PAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFI 423
PAQSP ADPLQQAYAG+ YA AAYP+AY +S AFPQ P +PQQQREGPEGCNLFI
Sbjct: 343 PAQSPGVADPLQQAYAGMHHYA--AAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFI 400
Query: 424 YHLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMNGF 463
YHLPQEFGDAEL+Q FLP FGFVSFDNP SAQTAIQAMNGF
Sbjct: 401 YHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGF 460
Query: 464 QIGMKRLKVQLKRPKDANRPY 484
QIGMKRLKVQLKRPKDANRPY
Sbjct: 461 QIGMKRLKVQLKRPKDANRPY 481
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 602 bits (1551), Expect = e-172
Identities = 314/472 (66%), Positives = 359/472 (76%), Gaps = 36/472 (7%)
Query: 37 SHSPGNPSTIP--MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMH 94
S P P P MKD DAIKLF+GQIPR+LDEKDLKPLFE+FG+IYELTVLKD +TGMH
Sbjct: 26 SSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMH 85
Query: 95 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLF 154
KGCAFLTYC R+SA+KAQ+ALHEQKTLPGM RPIQVKPADSESRGG RKLF
Sbjct: 86 KGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRD--------RKLF 137
Query: 155 VGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGS 214
VGMLNKQQSE+DV RLF+ FG I+ECT+LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGS
Sbjct: 138 VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
Query: 215 QTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNP-MAIPFGAYGAYAQAMQQQAAL 273
QTMPGASSSLVVKFADTDKERT+RRMQQM GQ+G+ P + +PF Y AYAQA+ QQ
Sbjct: 198 QTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTT 257
Query: 274 MASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSP 333
+ S + G YL+P AF+ +QQ+ A+++NGL A P+ P SG +PP + AVP + +P
Sbjct: 258 VLSTS-GSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAP 316
Query: 334 IGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYP-A 392
I NGF G+ P G PA E V+ANG+ PYPAQSPT A+ L A++GVQQY A YP A
Sbjct: 317 I-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYT--AMYPTA 373
Query: 393 AYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP----------- 441
A I+ + PQPPP++ QQQREGPEGCNLFIYHLPQEFGD EL QMFLP
Sbjct: 374 AITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFM 433
Query: 442 ---------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
FGFVSFDNPASAQ AIQAMNGFQIGMKRLKVQLKRPKD PY
Sbjct: 434 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 485
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 358 bits (920), Expect = 5e-99
Identities = 221/500 (44%), Positives = 286/500 (57%), Gaps = 66/500 (13%)
Query: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
Query: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSH 150
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE
Sbjct: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE-------D 107
Query: 151 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 210
RKLF+GM++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 167
Query: 211 LHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQAMQQ 269
+H +QTM G SS +VVKFADT K++ +RM QQ+ QM + ++ +G Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV-WGNLAGLNTLGPQ 226
Query: 270 QAALMASVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP----------- 312
AL+ A G LN PM A Q+Q +AAL +AA TP
Sbjct: 227 YLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSS 285
Query: 313 -----TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPAQ 366
TS GS+P ++ +V I S + G N G A A G+
Sbjct: 286 PLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLS 345
Query: 367 SPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIY 424
+ T + + L QAY+G+QQYA AA P Y Q Q Q+EGPEG NLFIY
Sbjct: 346 NGTGSTMEALTQAYSGIQQYAA-AALPTLYNQ--NLLTQQSIGAAGSQKEGPEGANLFIY 402
Query: 425 HLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMNGFQ 464
HLPQEFGD +L+QMF+P FGFVS+DNP SAQ AIQ+MNGFQ
Sbjct: 403 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 462
Query: 465 IGMKRLKVQLKRPKDANRPY 484
IGMKRLKVQLKR K+ ++PY
Sbjct: 463 IGMKRLKVQLKRSKNDSKPY 482
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 358 bits (918), Expect = 8e-99
Identities = 227/516 (43%), Positives = 292/516 (56%), Gaps = 82/516 (15%)
Query: 26 SPGSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
S G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++
Sbjct: 18 SNGTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN 70
Query: 85 VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSS 142
VL+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 71 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE 130
Query: 143 CLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHA 202
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A
Sbjct: 131 -------DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRA 183
Query: 203 EAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMA----IPF 257
AQ AI A+H SQTM G SS +VVKFADT K++ RR+ QQ+A QM N
Sbjct: 184 MAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGL 243
Query: 258 GAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGS 317
G A+ QQA +++ + MA A Q+Q +A L AAA + TS +
Sbjct: 244 GGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATL-AAAAAAAQTSATSTNA 302
Query: 318 TPPGITAPAVPSIPSPIG--------------------VNGFTGLPPQAN--GQPAAEAV 355
P T+ A+ ++ SP+ + G G N A A
Sbjct: 303 NPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAA 362
Query: 356 FANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ-- 411
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 363 LNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSA 412
Query: 412 ---QREGPEGCNLFIYHLPQEFGDAELMQMFLP--------------------FGFVSFD 448
Q+EGPEG NLFIYHLPQEFGD +++QMF+P FGFVS+D
Sbjct: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYD 472
Query: 449 NPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
NP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 473 NPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 357 bits (915), Expect = 2e-98
Identities = 220/501 (43%), Positives = 286/501 (57%), Gaps = 67/501 (13%)
Query: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
Query: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSH 150
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE
Sbjct: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE-------D 107
Query: 151 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 210
RKLF+GM++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 167
Query: 211 LHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQAMQQ 269
+H +QTM G SS +VVKFADT K++ +RM QQ+ QM + ++ +G Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV-WGNLAGLNTLGPQ 226
Query: 270 QAALMASVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP----------- 312
AL+ A G LN PM A Q+Q +AAL +AA TP
Sbjct: 227 YLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSS 285
Query: 313 ------TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPA 365
+S GS+P ++ +V I S + G N G A A G+
Sbjct: 286 PLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGL 345
Query: 366 QSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFI 423
+ T + + L QAY+G+QQYA AA P Y Q Q Q+EGPEG NLFI
Sbjct: 346 SNGTGSTMEALTQAYSGIQQYAA-AALPTLYNQ--NLLTQQSIGAAGSQKEGPEGANLFI 402
Query: 424 YHLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMNGF 463
YHLPQEFGD +L+QMF+P FGFVS+DNP SAQ AIQ+MNGF
Sbjct: 403 YHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 462
Query: 464 QIGMKRLKVQLKRPKDANRPY 484
QIGMKRLKVQLKR K+ ++PY
Sbjct: 463 QIGMKRLKVQLKRSKNDSKPY 483
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 355 bits (910), Expect = 7e-98
Identities = 221/503 (43%), Positives = 285/503 (56%), Gaps = 68/503 (13%)
Query: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
Query: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSH 150
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE
Sbjct: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE-------D 107
Query: 151 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 210
RKLF+GM++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 167
Query: 211 LHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQAMQQ 269
+H +QTM G SS +VVKFADT K++ +RM QQ+ QM + ++ G Q
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQY 227
Query: 270 QA---ALMASVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP-------- 312
A L+ A G LN PM A Q+Q +AAL +AA TP
Sbjct: 228 LALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTT 286
Query: 313 --------TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPY 363
TS GS+P ++ +V I S + G N G A A G+
Sbjct: 287 SSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSS 346
Query: 364 PAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNL 421
+ T + + L QAY+G+QQYA AA P Y Q Q Q+EGPEG NL
Sbjct: 347 GLSNGTGSTMEALTQAYSGIQQYAA-AALPTLYNQ--NLLTQQSIGAAGSQKEGPEGANL 403
Query: 422 FIYHLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMN 461
FIYHLPQEFGD +L+QMF+P FGFVS+DNP SAQ AIQ+MN
Sbjct: 404 FIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 463
Query: 462 GFQIGMKRLKVQLKRPKDANRPY 484
GFQIGMKRLKVQLKR K+ ++PY
Sbjct: 464 GFQIGMKRLKVQLKRSKNDSKPY 486
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 355 bits (910), Expect = 7e-98
Identities = 227/520 (43%), Positives = 293/520 (56%), Gaps = 88/520 (16%)
Query: 28 GSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL
Sbjct: 27 GTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVL 79
Query: 87 KDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 80 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE-- 137
Query: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 204
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A A
Sbjct: 138 -----DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMA 192
Query: 205 QAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFGA 259
Q AI A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 193 QNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGG 252
Query: 260 YGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTP 319
A+ QQA +++ + MA A Q+Q +A L AAA + TS + P
Sbjct: 253 LTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANP 311
Query: 320 PGITAPAVPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE--- 353
T+ A+ ++ SP+ +N T L N A+
Sbjct: 312 LSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLS 371
Query: 354 --AVFANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIP 409
A G+ + TA D L QAY+G+QQYA AA P Y Q ++
Sbjct: 372 GMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQ 421
Query: 410 QQ-----QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------F 444
QQ Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG F
Sbjct: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Query: 445 VSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
VS+DNP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 482 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 352 bits (903), Expect = 4e-97
Identities = 224/513 (43%), Positives = 289/513 (56%), Gaps = 86/513 (16%)
Query: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
Query: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPS 149
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE------- 106
Query: 150 HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 209
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Query: 210 ALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFGAYGAYA 264
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 167 AMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQY 226
Query: 265 QAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 324
A+ QQA +++ + MA A Q+Q +A L AAA + TS + P T+
Sbjct: 227 LALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTS 285
Query: 325 PAVPSIPSPIGVN--------------------GFTGLPPQAN------GQPAAEAVFAN 358
A+ ++ SP+ + G G N G + A
Sbjct: 286 SALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNG 345
Query: 359 GIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ----- 411
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 346 GLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSAAGS 395
Query: 412 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------FVSFDNPA 451
Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG FVS+DNP
Sbjct: 396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455
Query: 452 SAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 351 bits (900), Expect = 1e-96
Identities = 225/515 (43%), Positives = 290/515 (56%), Gaps = 88/515 (17%)
Query: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
Query: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPS 149
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE------- 106
Query: 150 HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 209
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Query: 210 ALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFGAYGAYA 264
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 167 AMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQY 226
Query: 265 QAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 324
A+ QQA +++ + MA A Q+Q +A L AAA + TS + P T+
Sbjct: 227 LALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTS 285
Query: 325 PAVPSIPSPIG-----------VNGFTGLPP------------QANGQPAAE-----AVF 356
A+ ++ SP+ +N T L N A+ A
Sbjct: 286 SALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAAL 345
Query: 357 ANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ--- 411
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 346 NGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSAA 395
Query: 412 --QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------FVSFDN 449
Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG FVS+DN
Sbjct: 396 GSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDN 455
Query: 450 PASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
P SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 456 PVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 490
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 347 bits (889), Expect = 2e-95
Identities = 182/294 (61%), Positives = 219/294 (74%), Gaps = 14/294 (4%)
Query: 124 MNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 183
M RPIQVKPADSESRGG RKLFVGMLNKQQSE+DV RLF+ FG I+ECT+L
Sbjct: 1 MARPIQVKPADSESRGGRD--------RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL 52
Query: 184 RGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQM 243
RGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM
Sbjct: 53 RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM 112
Query: 244 AGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNM 302
GQ+G+ P + +PF Y AYAQA+ QQ + S + G YL+P AF+ +QQ+ A+++
Sbjct: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSL 171
Query: 303 NGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHP 362
NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ P
Sbjct: 172 NGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVP 230
Query: 363 YPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 415
YPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG
Sbjct: 231 YPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 89.0 bits (219), Expect = 9e-18
Identities = 98/370 (26%), Positives = 154/370 (41%), Gaps = 39/370 (10%)
Query: 46 IPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCER 105
I ++ DA +++G + + E L LF + G + + KDR TG H+G F+ +
Sbjct: 6 ISERNQDAT-VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 106 ESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSED 165
E A A+ + +PI+V A + + + +F+G L+ + E
Sbjct: 65 ED---ADYAIKIMNMIKLYGKPIRVNKASAHN-------KNLDVGANIFIGNLDPEIDEK 114
Query: 166 DVRRLFEAFGNI-EECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSS 223
+ F AFG I + I+R PD GNSKG AF+ ++S + AAI A++G +
Sbjct: 115 LLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRP 171
Query: 224 LVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYL 283
+ V +A + R + NP++ + +A A +A
Sbjct: 172 ITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSA----------P 221
Query: 284 NPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLP 343
NP+ + + + + G P+ P G+ PPGI PA+P P P G G P
Sbjct: 222 NPVVSSLGSGLPP-PGMPPPGSFPPPVPPP--GALPPGI-PPAMPPPPMPPGAAGHG--P 275
Query: 344 PQANGQPAAEAVFANGIHPYPAQSPTAADP----LQQAYAGVQQYAGPAAYPAAYGQISQ 399
P A G P A HP+P P +Q A+ G P A P G Q
Sbjct: 276 PSA-GTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG--GQ 332
Query: 400 AFPQPPPMIP 409
P+PPP +P
Sbjct: 333 PPPRPPPGMP 342
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 82.0 bits (201), Expect = 1e-15
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 16/218 (7%)
Query: 23 LGSSPGSAGHMNG---LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGK 79
L + P NG ++++ +P + L + +P+N+ +++LK LF G+
Sbjct: 5 LSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE 64
Query: 80 IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 139
I +++D+ TG G F+ Y + + A KA + L+ + + I+V S +R
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV----SYARP 117
Query: 140 GSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKY 198
S+ +R L+V L K ++ ++ +LF +G I IL G S+G F+++
Sbjct: 118 SSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Query: 199 SSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 236
EA+ AI L+G Q PGA+ + VKFA+ ++T
Sbjct: 174 DKRIEAEEAIKGLNG-QKPPGATEPITVKFANNPSQKT 210
Score = 59.3 bits (142), Expect = 8e-09
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 39 SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
S PS+ ++D + L++ +P+ + +K+L+ LF ++G+I +L D+ TG+ +G
Sbjct: 113 SYARPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 169
Query: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVK----PADSESRGGSSCLRQPPSHRK-- 152
F+ + +R A +A L+ QK PG PI VK P+ ++ S L Q P+ R
Sbjct: 170 FIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPG 228
Query: 153 -------------------------------------------------LFVGMLNKQQS 163
+FV L
Sbjct: 229 PLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDAD 288
Query: 164 EDDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHG 213
E + ++F FG + ++R + N KG FV +++ EA AI +L+G
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 58.5 bits (140), Expect = 1e-08
Identities = 85/369 (23%), Positives = 132/369 (35%), Gaps = 89/369 (24%)
Query: 149 SHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAA 207
S L V L + ++++++ LF + G IE C ++R G S G FV Y +A+ A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 208 INALHG----------SQTMPGASS--SLVVKFADTDKERTMRRMQQMAGQMGMFNPMAI 255
IN L+G S P ++S + + K T + ++Q+ Q G I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 256 PFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSG 315
+ Q + V F + A + GL
Sbjct: 157 ----------LVDQVTGISRGVG----------FIRFDKRIEAEEAIKGL---------N 187
Query: 316 GSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYP------AQSPT 369
G PPG T P F P Q Q ++ + YP AQ
Sbjct: 188 GQKPPGATEPITVK---------FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFR 238
Query: 370 AADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQE 429
+ L AY GV++++ P P P G C +F+Y+L +
Sbjct: 239 LDNLLNMAY-GVKRFS-PMTIDGMTSLAGINIPGHP---------GTGWC-IFVYNLAPD 286
Query: 430 FGDAELMQMFLPFG--------------------FVSFDNPASAQTAIQAMNGFQIGMKR 469
++ L QMF PFG FV+ N A AI ++NG+++G +
Sbjct: 287 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 346
Query: 470 LKVQLKRPK 478
L+V K K
Sbjct: 347 LQVSFKTNK 355
Score = 42.0 bits (97), Expect = 0.001
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 20/82 (24%)
Query: 420 NLFIYHLPQEFGDAELMQMF--------------------LPFGFVSFDNPASAQTAIQA 459
NL + +LPQ EL +F L +GFV++ +P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 460 MNGFQIGMKRLKVQLKRPKDAN 481
+NG ++ K +KV RP A+
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
Score = 32.7 bits (73), Expect = 0.76
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 26 SPGSAGHMNGLS--HSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL 83
SP + M L+ + PG+P T +F+ + + DE L +F FG + +
Sbjct: 253 SPMTIDGMTSLAGINIPGHPGT-------GWCIFVYNLAPDADESILWQMFGPFGAVTNV 305
Query: 84 TVLKDRFTGMHKGCAFLTYCERESALKAQSALH 116
V++D T KG F+T + A A ++L+
Sbjct: 306 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 81.6 bits (200), Expect = 1e-15
Identities = 87/329 (26%), Positives = 142/329 (43%), Gaps = 69/329 (20%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKD---------HDAIKLFIGQIPRNLDEKDLKPLFE 75
S P + G+ G S SP P+++ DA +F Q+ + +DL+ F
Sbjct: 128 SPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFS 187
Query: 76 EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 135
GK+ ++ ++ DR + KG A++ +CE +S A L Q+ L PI V+ + +
Sbjct: 188 AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA-IGLTGQRLL---GVPIIVQASQA 243
Query: 136 ESRG----GSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNS 190
E ++ + +L+VG L+ +ED +R +FE FG I+ +++ D G S
Sbjct: 244 EKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRS 303
Query: 191 KGCAFVKYSSHAEAQAAINALHG-------------SQTMPGASSSLVVKFADTDKERTM 237
KG F+ +S A+ A+ L+G ++ + G + + F D D+E
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD---ITFPDGDQE--- 357
Query: 238 RRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGG--YLNPMAAFAAAQMQ 295
+ G+ G Q LMA +A+G L AA AAA
Sbjct: 358 -----------------LDLGSAGGRFQ-------LMAKLAEGAGIQLPSTAAAAAAAAA 393
Query: 296 QMAALNMNGLAAAPMTPTSGGSTPPGITA 324
Q AAL +NG A P+ G P +TA
Sbjct: 394 QAAALQLNG--AVPL----GALNPAALTA 416
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 81.6 bits (200), Expect = 1e-15
Identities = 87/329 (26%), Positives = 142/329 (43%), Gaps = 69/329 (20%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKD---------HDAIKLFIGQIPRNLDEKDLKPLFE 75
S P + G+ G S SP P+++ DA +F Q+ + +DL+ F
Sbjct: 112 SPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFS 171
Query: 76 EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 135
GK+ ++ ++ DR + KG A++ +CE +S A L Q+ L PI V+ + +
Sbjct: 172 AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA-IGLTGQRLL---GVPIIVQASQA 227
Query: 136 ESRG----GSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNS 190
E ++ + +L+VG L+ +ED +R +FE FG I+ +++ D G S
Sbjct: 228 EKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRS 287
Query: 191 KGCAFVKYSSHAEAQAAINALHG-------------SQTMPGASSSLVVKFADTDKERTM 237
KG F+ +S A+ A+ L+G ++ + G + + F D D+E
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD---ITFPDGDQE--- 341
Query: 238 RRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGG--YLNPMAAFAAAQMQ 295
+ G+ G Q LMA +A+G L AA AAA
Sbjct: 342 -----------------LDLGSAGGRFQ-------LMAKLAEGAGIQLPSTAAAAAAAAA 377
Query: 296 QMAALNMNGLAAAPMTPTSGGSTPPGITA 324
Q AAL +NG A P+ G P +TA
Sbjct: 378 QAAALQLNG--AVPL----GALNPAALTA 400
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 80.1 bits (196), Expect = 4e-15
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 20/196 (10%)
Query: 14 DNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPL 73
D A S +G G PG ++ L P + ++F+ I + E L+
Sbjct: 2 DEAGSSASGGGFRPG----VDSLDEPPNS------------RIFL-VISKYTPESVLRER 44
Query: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133
F FG I ++ V++D+ T KG AF+ + A +A +H Q P +PI+V A
Sbjct: 45 FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104
Query: 134 DSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKG 192
S S G + R +FV M+ K +E+D+R F+ +G+IE C+I++ G SKG
Sbjct: 105 QSRSSGSHRDVEDEELTR-IFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKG 162
Query: 193 CAFVKYSSHAEAQAAI 208
+V+Y ++A AI
Sbjct: 163 LGYVRYLKPSQAAQAI 178
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 43/263 (16%)
Query: 36 LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95
++ S + S ++D + ++F+ IP++ E+DL+ F+ +G I +++K++ TG K
Sbjct: 103 IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
Query: 96 GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFV 155
G ++ Y + A AQ+ + ++ + + K ++S + S +RQ + V
Sbjct: 162 GLGYVRYLKPSQA--AQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRV 219
Query: 156 GMLNKQQ------------------------------SEDDVRRLFEAFGNIEECTILRG 185
M +Q +E+ + +F+ +E C + R
Sbjct: 220 NMFPFEQQSEFSSFDKNDSRGQEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRD 279
Query: 186 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT--MRRM--Q 241
P N G V+Y + A A A LHG Q PG + + V F D T +R+M Q
Sbjct: 280 PYSNY-GHGVVQYFNVASAIYAKYKLHGFQYPPG--NRIGVSFIDDGSNATDLLRKMATQ 336
Query: 242 QMAGQMGMF---NPMAIPFGAYG 261
+A Q+ NP F +G
Sbjct: 337 MVAAQLASMVWNNPSQQQFMQFG 359
Score = 45.4 bits (106), Expect = 1e-04
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 138 RGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFV 196
R G L +PP+ R V ++K E +R F FG+I++ ++R SKG AFV
Sbjct: 14 RPGVDSLDEPPNSRIFLV--ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFV 71
Query: 197 KYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 241
K++ ++A A+ +HG P + + V A + + R ++
Sbjct: 72 KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
Score = 33.5 bits (75), Expect = 0.44
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 142 SCLRQPPSH----RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVK 197
SC ++ P+ +LF+ D + +F FGN+ E ++ G K + K
Sbjct: 377 SCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSG-----KNVGYAK 431
Query: 198 YSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 241
Y+ A AI LHG + + G L V AD+ +E + +R +
Sbjct: 432 YADRISANDAIATLHG-KILNGV--RLKVMLADSPREESNKRQR 472
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 78.6 bits (192), Expect = 1e-14
Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 60/296 (20%)
Query: 49 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108
++ DA +F Q+ + +DL+ F GK+ ++ ++ DR + KG A++ +CE +S
Sbjct: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
Query: 109 LKAQSALHEQKTLPGMNRPIQVKPADSESRG----GSSCLRQPPSHRKLFVGMLNKQQSE 164
A L Q+ L PI V+ + +E ++ + +L+VG L+ +E
Sbjct: 187 PLA-IGLTGQRLL---GVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITE 242
Query: 165 DDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG---------- 213
D +R +FE FG I+ +++ D G SKG F+ +S A+ A+ L+G
Sbjct: 243 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
Query: 214 ---SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQ 270
++ + G + + F D D+E + G+ G Q
Sbjct: 303 GHVTERLDGGTD---ITFPDGDQE--------------------LDLGSAGGRFQ----- 334
Query: 271 AALMASVAQGG--YLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 324
LMA +A+G L AA AAA Q AAL +NG A P+ G P +TA
Sbjct: 335 --LMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNG--AVPL----GALNPAALTA 382
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 78.6 bits (192), Expect = 1e-14
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 109
D L + +P+N+ + + K LF G I +++D+ TG G F+ Y + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 110 KAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRR 169
KA + L+ K + I+V S +R S+ +R L+V L K S+ ++ +
Sbjct: 95 KAINTLNGLKL---QTKTIKV----SYARPSSASIRD----ANLYVSGLPKTMSQKEMEQ 143
Query: 170 LFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKF 228
LF +G I IL G S+G F+++ EA+ AI L+G + + GA+ + VKF
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
Query: 229 ADTDKERT 236
A+ ++T
Sbjct: 203 ANNPSQKT 210
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 13 ADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKP 72
AD A + NGL + + S PS+ ++D + L++ +P+ + +K+++
Sbjct: 93 ADKAINTLNGLKLQTKT------IKVSYARPSSASIRDAN---LYVSGLPKTMSQKEMEQ 143
Query: 73 LFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 132
LF ++G+I +L D+ TG+ +G F+ + +R A +A L+ QK L G PI VK
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
Query: 133 ADSESR 138
A++ S+
Sbjct: 203 ANNPSQ 208
Score = 55.8 bits (133), Expect = 8e-08
Identities = 81/365 (22%), Positives = 125/365 (34%), Gaps = 73/365 (20%)
Query: 149 SHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAA 207
S L V L + ++D+ + LF + G+IE C ++R G S G FV YS +A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 208 INALHG----------SQTMPGASSSLVVKFADTDKERTM--RRMQQMAGQMGMFNPMAI 255
IN L+G S P ++S + +TM + M+Q+ Q G I
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 256 PFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSG 315
+ V++G F + A + GL
Sbjct: 157 LVDQ--------------VTGVSRG------VGFIRFDKRIEAEEAIKGL---------N 187
Query: 316 GSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPY--PAQSPTAADP 373
G P G P F P Q GQ ++ + Y P T
Sbjct: 188 GQKPLGAAEPITVK---------FANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFR 238
Query: 374 LQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDA 433
L P + A + I+ + G +F+Y+L E ++
Sbjct: 239 LDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES 298
Query: 434 ELMQMFLPFG--------------------FVSFDNPASAQTAIQAMNGFQIGMKRLKVQ 473
L Q+F PFG FV+ N A AI ++NG+++G + L+V
Sbjct: 299 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
Query: 474 LKRPK 478
K K
Sbjct: 359 FKTSK 363
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 381 VQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMF- 439
V Q G G A P P ++ NL + +LPQ E +F
Sbjct: 2 VTQILGAMESQVGGGPAGPALPNGP-LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 440 -------------------LPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDA 480
L +GFV++ +P A AI +NG ++ K +KV RP A
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 481 N 481
+
Sbjct: 121 S 121
Score = 32.3 bits (72), Expect = 0.99
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 116 H 116
+
Sbjct: 346 N 346
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 78.6 bits (192), Expect = 1e-14
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 109
D L + +P+N+ + + K LF G I +++D+ TG G F+ Y + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 110 KAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRR 169
KA + L+ K + I+V S +R S+ +R L+V L K S+ ++ +
Sbjct: 95 KAINTLNGLKL---QTKTIKV----SYARPSSASIRD----ANLYVSGLPKTMSQKEMEQ 143
Query: 170 LFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKF 228
LF +G I IL G S+G F+++ EA+ AI L+G + + GA+ + VKF
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
Query: 229 ADTDKERT 236
A+ ++T
Sbjct: 203 ANNPSQKT 210
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 13 ADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKP 72
AD A + NGL + + S PS+ ++D + L++ +P+ + +K+++
Sbjct: 93 ADKAINTLNGLKLQTKT------IKVSYARPSSASIRDAN---LYVSGLPKTMSQKEMEQ 143
Query: 73 LFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 132
LF ++G+I +L D+ TG+ +G F+ + +R A +A L+ QK L G PI VK
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
Query: 133 ADSESR 138
A++ S+
Sbjct: 203 ANNPSQ 208
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 381 VQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMF- 439
V Q G G A P P ++ NL + +LPQ E +F
Sbjct: 2 VTQILGAMESQVGGGPAGPALPNGP-LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 440 -------------------LPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDA 480
L +GFV++ +P A AI +NG ++ K +KV RP A
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 481 N 481
+
Sbjct: 121 S 121
Score = 37.7 bits (86), Expect = 0.024
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 20/81 (24%)
Query: 418 GCNLFIYHLPQEFGDAELMQMFLPFG--------------------FVSFDNPASAQTAI 457
G +F+Y+L E ++ L Q+F PFG FV+ N A AI
Sbjct: 276 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 335
Query: 458 QAMNGFQIGMKRLKVQLKRPK 478
++NG+++G + L+V K K
Sbjct: 336 ASLNGYRLGERVLQVSFKTSK 356
Score = 32.3 bits (72), Expect = 0.99
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 116 H 116
+
Sbjct: 339 N 339
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 77.4 bits (189), Expect = 3e-14
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 17 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 76
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
+++D+ TG G F+ Y + + A KA + L+ + + I+V S +R S+ +
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV----SYARPSSASI 129
Query: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 203
R L+V L K ++ ++ +LF +G I IL G S+G F+++ E
Sbjct: 130 RD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 204 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
A+ AI L+G Q GA+ + VKFA+ +++ + +
Sbjct: 186 AEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQAL 221
Score = 60.5 bits (145), Expect = 3e-09
Identities = 90/399 (22%), Positives = 140/399 (35%), Gaps = 90/399 (22%)
Query: 132 PADSESRGGSSCLRQPPSHRK-----------LFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
P + S G SS R PS + L V L + ++++ R LF + G IE C
Sbjct: 16 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESC 75
Query: 181 TILRGP-DGNSKGCAFVKYSSHAEAQAAINALHG----------SQTMPGASS--SLVVK 227
++R G S G FV Y +A+ AIN L+G S P ++S +
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 135
Query: 228 FADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMA 287
+ K T + ++Q+ Q G I + V++G
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQ--------------VTGVSRG------V 175
Query: 288 AFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN 347
F + A + GL G P G T P F P Q +
Sbjct: 176 GFIRFDKRIEAEEAIKGL---------NGQKPSGATEPITVK---------FANNPSQKS 217
Query: 348 GQPAAEAVFANGIHPYP------AQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAF 401
Q ++ + YP AQ + L AY + +GP A + S
Sbjct: 218 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPIT 277
Query: 402 PQPPPMIPQQQREGPEGCN--LFIYHLPQEFGDAELMQMFLPFG---------------- 443
+ G G +F+Y+L + ++ L Q+F PFG
Sbjct: 278 IDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKC 337
Query: 444 ----FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 478
FV+ N A AI ++NG+++G + L+V K K
Sbjct: 338 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 39 SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
S PS+ ++D + L++ +P+ + +K+L+ LF ++G+I +L D+ TG+ +G
Sbjct: 120 SYARPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Query: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS----SCLRQPPSHRKLF 154
F+ + +R A +A L+ QK G PI VK A++ S+ S S L Q P+ R +
Sbjct: 177 FIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR--Y 233
Query: 155 VGMLNKQ 161
G L+ Q
Sbjct: 234 PGPLHHQ 240
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 420 NLFIYHLPQEFGDAELMQMF--------------------LPFGFVSFDNPASAQTAIQA 459
NL + +LPQ E +F L +GFV++ +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 460 MNGFQIGMKRLKVQLKRPKDAN 481
+NG ++ K +KV RP A+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 32.0 bits (71), Expect = 1.3
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
+F+ + + DE L LF FG + + V++D T KG F+T + A A ++L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 116 H 116
+
Sbjct: 359 N 359
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 77.4 bits (189), Expect = 3e-14
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 20 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 79
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
+++D+ TG G F+ Y + + A KA + L+ + + I+V S +R S+ +
Sbjct: 80 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV----SYARPSSASI 132
Query: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 203
R L+V L K ++ ++ +LF +G I IL G S+G F+++ E
Sbjct: 133 RD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 188
Query: 204 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
A+ AI L+G Q GA+ + VKFA+ +++ + +
Sbjct: 189 AEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQAL 224
Score = 60.8 bits (146), Expect = 3e-09
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 60/231 (25%)
Query: 39 SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
S PS+ ++D + L++ +P+ + +K+L+ LF ++G+I +L D+ TG+ +G
Sbjct: 123 SYARPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 179
Query: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS----SCLRQPPSHRK-- 152
F+ + +R A +A L+ QK G PI VK A++ S+ S S L Q P+ R
Sbjct: 180 FIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG 238
Query: 153 -------------------------------------------------LFVGMLNKQQS 163
+FV L+
Sbjct: 239 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD 298
Query: 164 EDDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHG 213
E + +LF FG + ++R + N KG FV +++ EA AI +L+G
Sbjct: 299 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 349
Score = 57.4 bits (137), Expect = 3e-08
Identities = 90/397 (22%), Positives = 141/397 (35%), Gaps = 100/397 (25%)
Query: 132 PADSESRGGSSCLRQPPSHRK-----------LFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
P + S G SS R PS + L V L + ++++ R LF + G IE C
Sbjct: 19 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESC 78
Query: 181 TILRGP-DGNSKGCAFVKYSSHAEAQAAINALHG----------SQTMPGASS--SLVVK 227
++R G S G FV Y +A+ AIN L+G S P ++S +
Sbjct: 79 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 138
Query: 228 FADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMA 287
+ K T + ++Q+ Q G I + V++G
Sbjct: 139 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQ--------------VTGVSRG------V 178
Query: 288 AFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN 347
F + A + GL G P G T P F P Q +
Sbjct: 179 GFIRFDKRIEAEEAIKGL---------NGQKPSGATEPITVK---------FANNPSQKS 220
Query: 348 GQPAAEAVFANGIHPYP------AQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAF 401
Q ++ + YP AQ + L AY GV++++ P +
Sbjct: 221 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFS-PITIDGMTSLVGMNI 278
Query: 402 PQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFG------------------ 443
P G C +F+Y+L + ++ L Q+F PFG
Sbjct: 279 PG---------HTGTGWC-IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG 328
Query: 444 --FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 478
FV+ N A AI ++NG+++G + L+V K K
Sbjct: 329 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 365
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 420 NLFIYHLPQEFGDAELMQMF--------------------LPFGFVSFDNPASAQTAIQA 459
NL + +LPQ E +F L +GFV++ +P A+ AI
Sbjct: 50 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109
Query: 460 MNGFQIGMKRLKVQLKRPKDAN 481
+NG ++ K +KV RP A+
Sbjct: 110 LNGLRLQTKTIKVSYARPSSAS 131
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 77.4 bits (189), Expect = 3e-14
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 17 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 76
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
+++D+ TG G F+ Y + + A KA + L+ + + I+V S +R S+ +
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV----SYARPSSASI 129
Query: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 203
R L+V L K ++ ++ +LF +G I IL G S+G F+++ E
Sbjct: 130 RD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 204 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
A+ AI L+G Q GA+ + VKFA+ +++ + +
Sbjct: 186 AEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQAL 221
Score = 60.8 bits (146), Expect = 3e-09
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 60/231 (25%)
Query: 39 SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
S PS+ ++D + L++ +P+ + +K+L+ LF ++G+I +L D+ TG+ +G
Sbjct: 120 SYARPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Query: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS----SCLRQPPSHRK-- 152
F+ + +R A +A L+ QK G PI VK A++ S+ S S L Q P+ R
Sbjct: 177 FIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG 235
Query: 153 -------------------------------------------------LFVGMLNKQQS 163
+FV L+
Sbjct: 236 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD 295
Query: 164 EDDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHG 213
E + +LF FG + ++R + N KG FV +++ EA AI +L+G
Sbjct: 296 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
Score = 57.8 bits (138), Expect = 2e-08
Identities = 91/411 (22%), Positives = 146/411 (35%), Gaps = 100/411 (24%)
Query: 118 QKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRK-----------LFVGMLNKQQSEDD 166
++ + M + P + S G SS R PS + L V L + ++++
Sbjct: 2 EQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEE 61
Query: 167 VRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHG----------SQ 215
R LF + G IE C ++R G S G FV Y +A+ AIN L+G S
Sbjct: 62 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
Query: 216 TMPGASS--SLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAAL 273
P ++S + + K T + ++Q+ Q G I
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ-------------- 167
Query: 274 MASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSP 333
+ V++G F + A + GL G P G T P
Sbjct: 168 VTGVSRG------VGFIRFDKRIEAEEAIKGL---------NGQKPSGATEPITVK---- 208
Query: 334 IGVNGFTGLPPQANGQPAAEAVFANGIHPYP------AQSPTAADPLQQAYAGVQQYAGP 387
F P Q + Q ++ + YP AQ + L AY GV++++ P
Sbjct: 209 -----FANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFS-P 261
Query: 388 AAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFG---- 443
+ P G C +F+Y+L + ++ L Q+F PFG
Sbjct: 262 ITIDGMTSLVGMNIPG---------HTGTGWC-IFVYNLSPDSDESVLWQLFGPFGAVNN 311
Query: 444 ----------------FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 478
FV+ N A AI ++NG+++G + L+V K K
Sbjct: 312 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 420 NLFIYHLPQEFGDAELMQMF--------------------LPFGFVSFDNPASAQTAIQA 459
NL + +LPQ E +F L +GFV++ +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 460 MNGFQIGMKRLKVQLKRPKDAN 481
+NG ++ K +KV RP A+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 77.4 bits (189), Expect = 3e-14
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 34 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 93
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
+++D+ TG G F+ Y + + A KA + L+ + + I+V S +R S+ +
Sbjct: 94 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV----SYARPSSASI 146
Query: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 203
R L+V L K ++ ++ +LF +G I IL G S+G F+++ E
Sbjct: 147 RD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 202
Query: 204 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
A+ AI L+G Q GA+ + VKFA+ +++ + +
Sbjct: 203 AEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQAL 238
Score = 60.8 bits (146), Expect = 3e-09
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 60/231 (25%)
Query: 39 SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
S PS+ ++D + L++ +P+ + +K+L+ LF ++G+I +L D+ TG+ +G
Sbjct: 137 SYARPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 193
Query: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS----SCLRQPPSHRK-- 152
F+ + +R A +A L+ QK G PI VK A++ S+ S S L Q P+ R
Sbjct: 194 FIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG 252
Query: 153 -------------------------------------------------LFVGMLNKQQS 163
+FV L+
Sbjct: 253 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD 312
Query: 164 EDDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHG 213
E + +LF FG + ++R + N KG FV +++ EA AI +L+G
Sbjct: 313 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 363
Score = 57.4 bits (137), Expect = 3e-08
Identities = 90/397 (22%), Positives = 141/397 (35%), Gaps = 100/397 (25%)
Query: 132 PADSESRGGSSCLRQPPSHRK-----------LFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
P + S G SS R PS + L V L + ++++ R LF + G IE C
Sbjct: 33 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESC 92
Query: 181 TILRGP-DGNSKGCAFVKYSSHAEAQAAINALHG----------SQTMPGASS--SLVVK 227
++R G S G FV Y +A+ AIN L+G S P ++S +
Sbjct: 93 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 152
Query: 228 FADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMA 287
+ K T + ++Q+ Q G I + V++G
Sbjct: 153 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQ--------------VTGVSRG------V 192
Query: 288 AFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN 347
F + A + GL G P G T P F P Q +
Sbjct: 193 GFIRFDKRIEAEEAIKGL---------NGQKPSGATEPITVK---------FANNPSQKS 234
Query: 348 GQPAAEAVFANGIHPYP------AQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAF 401
Q ++ + YP AQ + L AY GV++++ P +
Sbjct: 235 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFS-PITIDGMTSLVGMNI 292
Query: 402 PQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFG------------------ 443
P G C +F+Y+L + ++ L Q+F PFG
Sbjct: 293 PG---------HTGTGWC-IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG 342
Query: 444 --FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 478
FV+ N A AI ++NG+++G + L+V K K
Sbjct: 343 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 379
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 420 NLFIYHLPQEFGDAELMQMF--------------------LPFGFVSFDNPASAQTAIQA 459
NL + +LPQ E +F L +GFV++ +P A+ AI
Sbjct: 64 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123
Query: 460 MNGFQIGMKRLKVQLKRPKDAN 481
+NG ++ K +KV RP A+
Sbjct: 124 LNGLRLQTKTIKVSYARPSSAS 145
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 77.4 bits (189), Expect = 3e-14
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 25 SSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
+S S G + + P T D L + +P+N+ +++ + LF G+I
Sbjct: 17 TSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 76
Query: 85 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCL 144
+++D+ TG G F+ Y + + A KA + L+ + + I+V S +R S+ +
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV----SYARPSSASI 129
Query: 145 RQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 203
R L+V L K ++ ++ +LF +G I IL G S+G F+++ E
Sbjct: 130 RD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 204 AQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 240
A+ AI L+G Q GA+ + VKFA+ +++ + +
Sbjct: 186 AEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQAL 221
Score = 60.8 bits (146), Expect = 3e-09
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 60/231 (25%)
Query: 39 SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA 98
S PS+ ++D + L++ +P+ + +K+L+ LF ++G+I +L D+ TG+ +G
Sbjct: 120 SYARPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Query: 99 FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGS----SCLRQPPSHRK-- 152
F+ + +R A +A L+ QK G PI VK A++ S+ S S L Q P+ R
Sbjct: 177 FIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG 235
Query: 153 -------------------------------------------------LFVGMLNKQQS 163
+FV L+
Sbjct: 236 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD 295
Query: 164 EDDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHG 213
E + +LF FG + ++R + N KG FV +++ EA AI +L+G
Sbjct: 296 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
Score = 57.4 bits (137), Expect = 3e-08
Identities = 90/397 (22%), Positives = 141/397 (35%), Gaps = 100/397 (25%)
Query: 132 PADSESRGGSSCLRQPPSHRK-----------LFVGMLNKQQSEDDVRRLFEAFGNIEEC 180
P + S G SS R PS + L V L + ++++ R LF + G IE C
Sbjct: 16 PTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESC 75
Query: 181 TILRGP-DGNSKGCAFVKYSSHAEAQAAINALHG----------SQTMPGASS--SLVVK 227
++R G S G FV Y +A+ AIN L+G S P ++S +
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 135
Query: 228 FADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMA 287
+ K T + ++Q+ Q G I + V++G
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQ--------------VTGVSRG------V 175
Query: 288 AFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN 347
F + A + GL G P G T P F P Q +
Sbjct: 176 GFIRFDKRIEAEEAIKGL---------NGQKPSGATEPITVK---------FANNPSQKS 217
Query: 348 GQPAAEAVFANGIHPYP------AQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAF 401
Q ++ + YP AQ + L AY GV++++ P +
Sbjct: 218 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFS-PITIDGMTSLVGMNI 275
Query: 402 PQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFG------------------ 443
P G C +F+Y+L + ++ L Q+F PFG
Sbjct: 276 PG---------HTGTGWC-IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG 325
Query: 444 --FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 478
FV+ N A AI ++NG+++G + L+V K K
Sbjct: 326 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 420 NLFIYHLPQEFGDAELMQMF--------------------LPFGFVSFDNPASAQTAIQA 459
NL + +LPQ E +F L +GFV++ +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 460 MNGFQIGMKRLKVQLKRPKDAN 481
+NG ++ K +KV RP A+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 75.1 bits (183), Expect = 1e-13
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 25/187 (13%)
Query: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
++F+G+IPR+L E +L PLFE+ G I++L ++ D +G ++G AF+T+C +E+A +A
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAF 174
+ PG + + + A++ +LFVG + K ++++++ F
Sbjct: 125 CDSYEIRPGKHLGVCISVANN----------------RLFVGSIPKNKTKENILEEFSKV 168
Query: 175 GNIEE----CTILRGPDGNSK--GCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVK 227
+ E + PD K G F++Y H + AQA + G + G + + V+
Sbjct: 169 TGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVE 226
Query: 228 FADTDKE 234
+AD +E
Sbjct: 227 WADPVEE 233
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEA 204
QP ++FVG + + ED++ LFE G I + ++ P G ++G AF+ + A
Sbjct: 59 QPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAA 118
Query: 205 QAAINALHGSQTMPGASSSLVVKFAD 230
Q A+ + PG + + A+
Sbjct: 119 QEAVKLCDSYEIRPGKHLGVCISVAN 144
Score = 36.2 bits (82), Expect = 0.068
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 429 EFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 482
EFG E ++ + FV F++ +A A+ MNG +I + +++ L +P D R
Sbjct: 265 EFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKR 318
Score = 31.6 bits (70), Expect = 1.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
LF+ + + E+ L+ F EFGK+ + LKD AF+ + +R +A+KA +
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
Query: 116 HEQKTLPGMNRPIQVKPADSESR 138
+ ++ + KP D + +
Sbjct: 297 NGKEIEGEEIEIVLAKPPDKKRK 319
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 75.1 bits (183), Expect = 1e-13
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 25/187 (13%)
Query: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
++F+G+IPR+L E +L PLFE+ G I++L ++ D +G ++G AF+T+C +E+A +A
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAF 174
+ PG + + + A++ +LFVG + K ++++++ F
Sbjct: 226 CDSYEIRPGKHLGVCISVANN----------------RLFVGSIPKNKTKENILEEFSKV 269
Query: 175 GNIEE----CTILRGPDGNSK--GCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVK 227
+ E + PD K G F++Y H + AQA + G + G + + V+
Sbjct: 270 TGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVE 327
Query: 228 FADTDKE 234
+AD +E
Sbjct: 328 WADPVEE 334
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEA 204
QP ++FVG + + ED++ LFE G I + ++ P G ++G AF+ + A
Sbjct: 160 QPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAA 219
Query: 205 QAAINALHGSQTMPGASSSLVVKFAD 230
Q A+ + PG + + A+
Sbjct: 220 QEAVKLCDSYEIRPGKHLGVCISVAN 245
Score = 36.2 bits (82), Expect = 0.068
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 429 EFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 482
EFG E ++ + FV F++ +A A+ MNG +I + +++ L +P D R
Sbjct: 366 EFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKR 419
Score = 31.6 bits (70), Expect = 1.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
LF+ + + E+ L+ F EFGK+ + LKD AF+ + +R +A+KA +
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 397
Query: 116 HEQKTLPGMNRPIQVKPADSESR 138
+ ++ + KP D + +
Sbjct: 398 NGKEIEGEEIEIVLAKPPDKKRK 420
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,445,585
Number of Sequences: 37866
Number of extensions: 1069751
Number of successful extensions: 7903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 480
Number of HSP's that attempted gapping in prelim test: 5698
Number of HSP's gapped (non-prelim): 2173
length of query: 484
length of database: 18,247,518
effective HSP length: 106
effective length of query: 378
effective length of database: 14,233,722
effective search space: 5380346916
effective search space used: 5380346916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.