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Search of human proteins with 18765729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18765729 synaptosomal-associated protein 23 isoform SNAP23A
[Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18765729 synaptosomal-associated protein 23 isoform SNAP23A [... 424 e-119
gi|18765731 synaptosomal-associated protein 23 isoform SNAP23B [... 281 2e-76
gi|18765735 synaptosomal-associated protein 25 isoform SNAP25B [... 236 1e-62
gi|18765733 synaptosomal-associated protein 25 isoform SNAP25A [... 228 4e-60
gi|4759154 synaptosomal-associated protein 29 [Homo sapiens] 53 2e-07
gi|224465202 synaptosomal-associated protein, 47kDa [Homo sapiens] 36 0.027
gi|169178850 PREDICTED: similar to coiled-coil domain containing... 33 0.18
gi|154354979 myosin X [Homo sapiens] 33 0.23
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 33 0.23
gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo... 32 0.30
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 32 0.30
gi|5032131 syntaxin 6 [Homo sapiens] 32 0.51
gi|4507285 syntaxin 10 [Homo sapiens] 31 0.67
gi|4759188 syntaxin 8 [Homo sapiens] 31 0.88
gi|5454166 vesicle transport through interaction with t-SNAREs 1... 31 0.88
gi|24497447 nucleoporin 50kDa isoform a [Homo sapiens] 31 0.88
gi|24497451 nucleoporin 50kDa isoform b [Homo sapiens] 31 0.88
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens] 30 1.1
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens] 30 1.1
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 30 1.5
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 30 1.5
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 30 1.5
gi|111548657 hypothetical protein LOC345222 isoform b [Homo sapi... 30 1.5
gi|21735569 claspin [Homo sapiens] 30 2.0
gi|114155148 tropomyosin 3 isoform 5 [Homo sapiens] 30 2.0
gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens] 30 2.0
gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens] 30 2.0
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 29 2.6
gi|56118219 insulin-like growth factor 2 mRNA binding protein 2 ... 29 2.6
gi|64085377 insulin-like growth factor 2 mRNA binding protein 2 ... 29 2.6
>gi|18765729 synaptosomal-associated protein 23 isoform SNAP23A
[Homo sapiens]
Length = 211
Score = 424 bits (1091), Expect = e-119
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 60
MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
Sbjct: 1 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 60
Query: 61 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 120
QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
Sbjct: 61 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 120
Query: 121 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 180
PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
Sbjct: 121 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 180
Query: 181 NPQIKRITDKADTNRDRIDIANARAKKLIDS 211
NPQIKRITDKADTNRDRIDIANARAKKLIDS
Sbjct: 181 NPQIKRITDKADTNRDRIDIANARAKKLIDS 211
>gi|18765731 synaptosomal-associated protein 23 isoform SNAP23B
[Homo sapiens]
Length = 158
Score = 281 bits (720), Expect = 2e-76
Identities = 155/211 (73%), Positives = 155/211 (73%), Gaps = 53/211 (25%)
Query: 1 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 60
MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
Sbjct: 1 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 60
Query: 61 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 120
QINKDMRETEKTLTELNKCCGLCVCPCN N
Sbjct: 61 QINKDMRETEKTLTELNKCCGLCVCPCNSITN---------------------------- 92
Query: 121 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 180
DAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
Sbjct: 93 -------------------------DAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 127
Query: 181 NPQIKRITDKADTNRDRIDIANARAKKLIDS 211
NPQIKRITDKADTNRDRIDIANARAKKLIDS
Sbjct: 128 NPQIKRITDKADTNRDRIDIANARAKKLIDS 158
>gi|18765735 synaptosomal-associated protein 25 isoform SNAP25B
[Homo sapiens]
Length = 206
Score = 236 bits (601), Expect = 1e-62
Identities = 124/205 (60%), Positives = 153/205 (74%), Gaps = 11/205 (5%)
Query: 7 EEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
EE+Q+RA Q+ DESLESTRR+L L ES+DAGI+T+ MLDEQ EQL RIEEG+DQINKDM
Sbjct: 12 EEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
Query: 67 RETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPGPVTNGQ 126
+E EK LT+L K CGLCVCPCN+ K S AYK WG N+ VV+ QP V + +
Sbjct: 72 KEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVVASQPARVVDER 124
Query: 127 LQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKR 186
Q A SGG+I+R+TNDARE+EM+ENL QV I+GNL+ MAL++GNEID QN QI R
Sbjct: 125 EQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR 180
Query: 187 ITDKADTNRDRIDIANARAKKLIDS 211
I +KAD+N+ RID AN RA K++ S
Sbjct: 181 IMEKADSNKTRIDEANQRATKMLGS 205
>gi|18765733 synaptosomal-associated protein 25 isoform SNAP25A
[Homo sapiens]
Length = 206
Score = 228 bits (580), Expect = 4e-60
Identities = 118/205 (57%), Positives = 152/205 (74%), Gaps = 11/205 (5%)
Query: 7 EEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
EE+Q+RA Q+ DESLESTRR+L L ES+DAGI+T+ MLDEQ EQL+R+EEG++ IN+DM
Sbjct: 12 EEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 71
Query: 67 RETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPGPVTNGQ 126
+E EK L +L KCCGL +CPCN+ K S AYK WG N+ VV+ QP V + +
Sbjct: 72 KEAEKNLKDLGKCCGLFICPCNKLK---SSDAYKKAWG----NNQDGVVASQPARVVDER 124
Query: 127 LQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKR 186
Q A SGG+I+R+TNDARE+EM+ENL QV I+GNL+ MAL++GNEID QN QI R
Sbjct: 125 EQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR 180
Query: 187 ITDKADTNRDRIDIANARAKKLIDS 211
I +KAD+N+ RID AN RA K++ S
Sbjct: 181 IMEKADSNKTRIDEANQRATKMLGS 205
>gi|4759154 synaptosomal-associated protein 29 [Homo sapiens]
Length = 258
Score = 52.8 bits (125), Expect = 2e-07
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 16/199 (8%)
Query: 9 IQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRE 68
++Q + + + ST R L L ES+ G+ + L Q+ L R E+ +D++++D++
Sbjct: 45 LRQEVLRRAEATAASTSRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKI 104
Query: 69 TEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPGPVTNGQLQ 128
++K + + G V ++K E+ T N +S Q
Sbjct: 105 SQKHINSIKSVFGGLV-NYFKSKPVETPPEQNGTLTSQPNNRLKEAISTSKEQEAKYQAS 163
Query: 129 QPTT-----------GAASG----GYIKRITNDAREDEMEENLTQVGSILGNLKDMALNI 173
P GA S Y K A +++ NL ++ LG LKD+AL +
Sbjct: 164 HPNLRKLDDTDPVPRGAGSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGM 223
Query: 174 GNEIDAQNPQIKRITDKAD 192
EI+ Q+ + R+T K D
Sbjct: 224 QTEIEEQDDILDRLTTKVD 242
Score = 29.3 bits (64), Expect = 2.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 14 HQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTL 73
HQ D +L+ LG +D + T ++EQ + L+R+ +D+++ +++ TE+ +
Sbjct: 199 HQKIDSNLDELSMGLG---RLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKV 255
Query: 74 TEL 76
+L
Sbjct: 256 RQL 258
>gi|224465202 synaptosomal-associated protein, 47kDa [Homo sapiens]
Length = 464
Score = 35.8 bits (81), Expect = 0.027
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 16 ITDESLESTR--RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTL 73
+ D S+ TR + GL SQ T +L Q +QL+ + GLD++ D+ ++ L
Sbjct: 154 VADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLL 213
Query: 74 TEL 76
TEL
Sbjct: 214 TEL 216
>gi|169178850 PREDICTED: similar to coiled-coil domain containing 29
[Homo sapiens]
Length = 197
Score = 33.1 bits (74), Expect = 0.18
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 4 LSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNR--------- 54
LS +++QQ ++ + IL L +++ ++ ++ L E K +L+
Sbjct: 67 LSMKKVQQECEKLEENQKMLEEEILNLKTHMENSMVE-LSKLQEYKSELDERAMQAVEKL 125
Query: 55 ----IEEGLDQINKDMRETEKTLTELNKCCGL 82
++ LD + + +RET++T+ L+ CC L
Sbjct: 126 KEIHLQMELDCVEQIIRETKRTVAVLDTCCHL 157
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 32.7 bits (73), Expect = 0.23
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 29/173 (16%)
Query: 2 DNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQ-LNRIEE--- 57
+N EEI + +I D ++ L L S + L E+++Q L R+EE
Sbjct: 883 ENKQVEEILRLEKEIEDLQRMKEQQELSLTEAS-------LQKLQERRDQELRRLEEEAC 935
Query: 58 ----------GLDQINKDMRETEKTLTELNKCCG-LCVCPCNRTKNFESGKAYKTTWGDG 106
D+I++ +R E++L+ ++ L C NF + Y D
Sbjct: 936 RAAQEFLESLNFDEIDECVRNIERSLSVGSEFSSELAESACEEKPNFNFSQPYPEEEVDE 995
Query: 107 GENSPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQV 159
G + + P P +G Q T+G R ++D+ E++ N T V
Sbjct: 996 GFEADDDAFKDSPNPSEHGHSDQRTSGI-------RTSDDSSEEDPYMNDTVV 1041
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 32.7 bits (73), Expect = 0.23
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 19 ESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTELNK 78
+++E R+ L +E+QD T +LDE K++L +E+G+ + RE EL
Sbjct: 3051 KAVEPKRQAL---LEAQDDLGVTQRILDEAKQRLREVEDGIATMQAKYRECITKKEELEL 3107
Query: 79 CCGLCVCPCNRTKNFESGKA-YKTTWGDGGEN 109
C C R +G + K W + EN
Sbjct: 3108 KCEQCEQRLGRAGKLINGLSDEKVRWQETVEN 3139
>gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo
sapiens]
Length = 805
Score = 32.3 bits (72), Expect = 0.30
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 14/198 (7%)
Query: 9 IQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRE 68
++++ + ++++ E RRI L E A + T+ + Q QL +EE + + + +
Sbjct: 490 LKKKCQKESEQNKEKQRRIETL--EKYLADLPTLDDVQSQSLQLQILEEKNKNLQEALID 547
Query: 69 TEKTLTELNKCC----GLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPGPVTN 124
TEK L E+ K C +C + K + T + C + +
Sbjct: 548 TEKKLEEIKKQCQDKETQLICQKKKEKELVT-----TVQSLQQKVERCLEDGIRLPMLDA 602
Query: 125 GQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMAL---NIGNEIDAQN 181
QLQ D+++DE++ + ++ S+ G L L + E++ +
Sbjct: 603 KQLQNENDNLRQQNETASKIIDSQQDEIDRMILEIQSMQGKLSKEKLTTQKMMEELEKKE 662
Query: 182 PQIKRITDKADTNRDRID 199
++R+T N+ + D
Sbjct: 663 RNVQRLTKALLENQRQTD 680
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 32.3 bits (72), Expect = 0.30
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 22 ESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
+ T + GL+ Q AG K + +E +E NR+E DQ++ DM
Sbjct: 157 QQTSKSSGLSSSLQPAGAKADALREEMEEAANRVEICRDQLSADM 201
>gi|5032131 syntaxin 6 [Homo sapiens]
Length = 255
Score = 31.6 bits (70), Expect = 0.51
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 150 DEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDKADTNRDRID 199
++ +E L V +G LK+M+ IG E++ Q ++ + + ++ + R+D
Sbjct: 167 EQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLD 216
>gi|4507285 syntaxin 10 [Homo sapiens]
Length = 249
Score = 31.2 bits (69), Expect = 0.67
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 134 AASGGYIK--RITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDKA 191
+A+ YI+ + T DE ++ L V + LK M+ +G E+D Q + +
Sbjct: 143 SATSRYIEEQQATQQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEM 202
Query: 192 DTNRDRID 199
D + R+D
Sbjct: 203 DHTQSRMD 210
>gi|4759188 syntaxin 8 [Homo sapiens]
Length = 236
Score = 30.8 bits (68), Expect = 0.88
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 151 EMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDKADTNRDRI 198
E + L + SI+ K M IGNE+D QN I + + + +++
Sbjct: 150 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKL 197
>gi|5454166 vesicle transport through interaction with t-SNAREs 1B
[Homo sapiens]
Length = 232
Score = 30.8 bits (68), Expect = 0.88
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 19 ESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTELNK 78
+S+E + RI A E+ G + I L EQ++QL R + L ++++ ++ K L +++
Sbjct: 144 QSIERSHRI---ATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSR 200
>gi|24497447 nucleoporin 50kDa isoform a [Homo sapiens]
Length = 440
Score = 30.8 bits (68), Expect = 0.88
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 93 FESGKAY---KTTWGDGGENSPCNVVSKQPGPVTNGQLQQP-TTGAAS 136
F S KA K +G N P +V K P TNG QQP ++G AS
Sbjct: 72 FASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLAS 119
>gi|24497451 nucleoporin 50kDa isoform b [Homo sapiens]
Length = 468
Score = 30.8 bits (68), Expect = 0.88
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 93 FESGKAY---KTTWGDGGENSPCNVVSKQPGPVTNGQLQQP-TTGAAS 136
F S KA K +G N P +V K P TNG QQP ++G AS
Sbjct: 100 FASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLAS 147
>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
Length = 1184
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 106 GGENSPCNVVSKQPGPVTNGQLQQPTTGAASG------GYIKRITNDAREDEMEE 154
GG + P + + P P L +PT AA G +R+T D+ E+E EE
Sbjct: 233 GGGSQPLSTIQAPPWPAV---LPRPTAAAALGPPAPVQAKARRVTEDSEEEEEEE 284
>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
Length = 1231
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 106 GGENSPCNVVSKQPGPVTNGQLQQPTTGAASG------GYIKRITNDAREDEMEE 154
GG + P + + P P L +PT AA G +R+T D+ E+E EE
Sbjct: 233 GGGSQPLSTIQAPPWPAV---LPRPTAAAALGPPAPVQAKARRVTEDSEEEEEEE 284
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 7 EEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
E+ Q+ + Q+ E +ES+ +GL E++D I IT+ K LN + L Q+ D
Sbjct: 1220 EDQQELSRQL--EVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKLYQVLDDG 1277
Query: 67 R---------ETEKTLTELNKC 79
+ + E L +L +C
Sbjct: 1278 KRLLISISCSDLESQLNQLGEC 1299
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 7 EEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
E+ Q+ + Q+ E +ES+ +GL E++D I IT+ K LN + L Q+ D
Sbjct: 6625 EDQQELSRQL--EVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKLYQVLDDG 6682
Query: 67 R---------ETEKTLTELNKC 79
+ + E L +L +C
Sbjct: 6683 KRLLISISCSDLESQLNQLGEC 6704
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 7 EEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
E+ Q+ + Q+ E +ES+ +GL E++D I IT+ K LN + L Q+ D
Sbjct: 6696 EDQQELSRQL--EVVESSIPSVGLVEENEDRLIDRITLYQHLKSSLNEYQPKLYQVLDDG 6753
Query: 67 R---------ETEKTLTELNKC 79
+ + E L +L +C
Sbjct: 6754 KRLLISISCSDLESQLNQLGEC 6775
>gi|111548657 hypothetical protein LOC345222 isoform b [Homo
sapiens]
Length = 267
Score = 30.0 bits (66), Expect = 1.5
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 18 DESLESTRRILGLAIESQDAGIKT--ITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 75
D+ +S+ +L L S++ +K + QK+QL +E +++ + R E+T E
Sbjct: 184 DDRSDSSSSLLSLKFRSEERPVKKRKVQSCHLQKKQLRLLEAMVEEQRRLSRAVEETCRE 243
Query: 76 LNKC 79
+++C
Sbjct: 244 ISRC 247
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 2 DNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEE 57
D EEI + + DE L S + +SQ I TMLD+ K QL +E
Sbjct: 1069 DEYDGEEIDEYEEDVIDEVLPSDEEL-----QSQIKKIHMKTMLDDDKRQLRLYQE 1119
>gi|114155148 tropomyosin 3 isoform 5 [Homo sapiens]
Length = 247
Score = 29.6 bits (65), Expect = 2.0
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 146 DAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDK---ADTNRDRIDIAN 202
+++ E+EE L V + L +L+ A + D +IK +TDK A+T + + +
Sbjct: 151 ESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSV 210
Query: 203 ARAKKLID 210
A+ +K ID
Sbjct: 211 AKLEKTID 218
>gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens]
Length = 248
Score = 29.6 bits (65), Expect = 2.0
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 146 DAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDK---ADTNRDRIDIAN 202
+++ E+EE L V + L +L+ A + D +IK +TDK A+T + + +
Sbjct: 151 ESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSV 210
Query: 203 ARAKKLID 210
A+ +K ID
Sbjct: 211 AKLEKTID 218
>gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens]
Length = 285
Score = 29.6 bits (65), Expect = 2.0
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 146 DAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDK---ADTNRDRIDIAN 202
+++ E+EE L V + L +L+ A + D +IK +TDK A+T + + +
Sbjct: 188 ESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSV 247
Query: 203 ARAKKLID 210
A+ +K ID
Sbjct: 248 AKLEKTID 255
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 7 EEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 66
E+I+++ +I ++ E RR + E ++ + M+ E++E++ R+EE + + + +
Sbjct: 321 EKIREQEEKIREQE-EKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRLEEMMWEKEEKI 379
Query: 67 RETEKTLTELNK 78
RE E+ + E K
Sbjct: 380 RELEEKMHEQEK 391
>gi|56118219 insulin-like growth factor 2 mRNA binding protein 2
isoform b [Homo sapiens]
Length = 556
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGL 59
+ NL+S E+ Q DE+ E RI+G SQ A K ++ + K+Q + +G+
Sbjct: 492 LQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQKYPQGV 550
>gi|64085377 insulin-like growth factor 2 mRNA binding protein 2
isoform a [Homo sapiens]
Length = 599
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGL 59
+ NL+S E+ Q DE+ E RI+G SQ A K ++ + K+Q + +G+
Sbjct: 535 LQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQKYPQGV 593
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,472,999
Number of Sequences: 37866
Number of extensions: 334582
Number of successful extensions: 1391
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 152
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.