Guide to the Human Genome
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Name: SNAP47 Sequence: fasta or formatted (464aa) NCBI GI: 224465202
Description:

synaptosomal-associated protein, 47kDa

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         32           3
 C cysteine            1.1          5           1
 D aspartate           4.7         22           2
 E glutamate           8.4         39           2
 F phenylalanine       2.6         12           1
 G glycine             5.4         25           1
 H histidine           3.7         17           2
 I isoleucine          5.0         23           2
 K lysine              5.0         23           2
 L leucine            11.0         51           3
 M methionine          3.0         14           1
 N asparagine          0.4          2           1
 P proline             5.6         26           2
 Q glutamine           3.9         18           2
 R arginine            9.3         43           3
 S serine              9.9         46           3
 T threonine           5.8         27           1
 V valine              5.4         25           2
 W tryptophan          2.2         10           2
 Y tyrosine            0.9          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptosomal-associated protein, 47kDa 
SNAP29                0.017   synaptosomal-associated protein 29 
SNAP23                0.012   synaptosomal-associated protein 23 isoform SNAP23B [...
SNAP23                0.012   synaptosomal-associated protein 23 isoform SNAP23A [...
SNAP25                0.010   synaptosomal-associated protein 25 isoform SNAP25B [...
UBXN1                 0.009   UBX domain protein 1 
SNAP25                0.007   synaptosomal-associated protein 25 isoform SNAP25A [...
C14orf73              0.007   hypothetical protein LOC91828 
RNF31                 0.007   ring finger protein 31 
CDK5RAP3              0.006   CDK5 regulatory subunit associated protein 3 
MYH14                 0.006   myosin, heavy chain 14 isoform 1 
MYH14                 0.006   myosin, heavy chain 14 isoform 2 
MYH14                 0.006   myosin, heavy chain 14 isoform 3 
STX8                  0.006   syntaxin 8 
CABC1                 0.006   chaperone, ABC1 activity of bc1 complex like precurs...
TMEM69                0.006   transmembrane protein 69 
HAUS4                 0.006   HAUS augmin-like complex, subunit 4 
ZBTB43                0.004   zinc finger and BTB domain containing 43 
ZBTB43                0.004   zinc finger and BTB domain containing 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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