Guide to the Human Genome
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Name: LOC728510 Sequence: fasta or formatted (109aa) NCBI GI: 113411677
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {109aa} PREDICTED: hypothetical protein
alt mRNA {109aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          4           1
 C cysteine            0.9          1           1
 D aspartate           2.8          3           1
 E glutamate          14.7         16           3
 F phenylalanine       5.5          6           1
 G glycine             3.7          4           1
 H histidine           2.8          3           1
 I isoleucine          0.9          1           1
 K lysine             11.9         13           2
 L leucine            12.8         14           2
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline             1.8          2           1
 Q glutamine           1.8          2           1
 R arginine            3.7          4           1
 S serine              4.6          5           1
 T threonine           9.2         10           2
 V valine             10.1         11           1
 W tryptophan          2.8          3           1
 Y tyrosine            2.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728510             1.000   PREDICTED: hypothetical protein 
LOC728510             1.000   PREDICTED: hypothetical protein 
SLC25A13              0.020   solute carrier family 25, member 13 isoform 2 
SLC25A13              0.020   solute carrier family 25, member 13 isoform 1 [Homo...
DTYMK                 0.015   deoxythymidylate kinase (thymidylate kinase) 
MDGA1                 0.015   MAM domain containing glycosylphosphatidylinositol a...
CCDC135               0.010   coiled-coil domain containing 135 
PSME1                 0.010   proteasome activator subunit 1 isoform 1 
PSME1                 0.010   proteasome activator subunit 1 isoform 2 
TRHDE                 0.010   thyrotropin-releasing hormone degrading enzyme 
LOC100289289          0.010   PREDICTED: hypothetical protein XP_002343409 
AFMID                 0.010   arylformamidase isoform 2 
AFMID                 0.010   arylformamidase isoform 1 
C10orf68              0.010   chromosome 10 open reading frame 68 
GOLGB1                0.010   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC283767             0.005   golgi autoantigen, golgin subfamily a-like 
AKD1                  0.005   adenylate kinase domain containing 1 isoform 1 [Hom...
DTNBP1                0.005   dystrobrevin binding protein 1 isoform b 
DTNBP1                0.005   dystrobrevin binding protein 1 isoform a 
SPTA1                 0.005   spectrin, alpha, erythrocytic 1 
CASP1                 0.005   caspase 1 isoform alpha precursor 
CASP1                 0.005   caspase 1 isoform beta precursor 
SLC29A3               0.005   solute carrier family 29 (nucleoside transporters),...
ERCC8                 0.005   excision repair cross-complementing rodent repair def...
DNAJC6                0.005   DnaJ (Hsp40) homolog, subfamily C, member 6 
PPIL4                 0.005   peptidylprolyl isomerase-like 4 
CARD16                0.005   caspase-1 dominant-negative inhibitor pseudo-ICE iso...
CARD16                0.005   caspase-1 dominant-negative inhibitor pseudo-ICE iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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