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Search of human proteins with 11321577
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a
[Homo sapiens]
(514 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 1047 0.0
gi|38016930 2'-5'-oligoadenylate synthetase-like isoform b [Homo... 446 e-125
gi|45007007 2'-5'oligoadenylate synthetase 3 [Homo sapiens] 266 3e-71
gi|74229015 2',5'-oligoadenylate synthetase 1 isoform 3 [Homo sa... 240 2e-63
gi|74229013 2',5'-oligoadenylate synthetase 1 isoform 1 [Homo sa... 240 2e-63
gi|74229011 2',5'-oligoadenylate synthetase 1 isoform 2 [Homo sa... 240 2e-63
gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo sa... 228 8e-60
gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo sa... 228 8e-60
gi|67191208 ubiquitin C [Homo sapiens] 73 5e-13
gi|11024714 ubiquitin B precursor [Homo sapiens] 71 3e-12
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 51 3e-06
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 51 3e-06
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 51 3e-06
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 51 3e-06
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 50 4e-06
gi|74229021 2'-5'-oligoadenylate synthetase 2 isoform 3 [Homo sa... 48 2e-05
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 48 2e-05
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 48 2e-05
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 48 2e-05
gi|222352096 ubiquitin D [Homo sapiens] 43 6e-04
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 36 0.073
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 36 0.073
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 36 0.073
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 36 0.073
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 35 0.16
gi|7657667 ubiquitin-like 4 [Homo sapiens] 35 0.21
gi|5453760 neural precursor cell expressed, developmentally down... 34 0.36
gi|171906567 peripheral benzodiazepine receptor-associated prote... 32 1.4
gi|171906559 peripheral benzodiazepine receptor-associated prote... 32 1.4
gi|5454180 zinc finger protein 193 [Homo sapiens] 31 2.4
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 1047 bits (2707), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR 60
MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR
Sbjct: 1 MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR 60
Query: 61 VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD 120
VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD
Sbjct: 61 VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD 120
Query: 121 LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA 180
LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA
Sbjct: 121 LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA 180
Query: 181 CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLT 240
CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLT
Sbjct: 181 CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLT 240
Query: 241 IYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKER 300
IYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKER
Sbjct: 241 IYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKER 300
Query: 301 PIILDPADPTLNVAEGYRWDIVAQRASQCLKQDCCYDNRENPISSWNVKRARDIHLTVEQ 360
PIILDPADPTLNVAEGYRWDIVAQRASQCLKQDCCYDNRENPISSWNVKRARDIHLTVEQ
Sbjct: 301 PIILDPADPTLNVAEGYRWDIVAQRASQCLKQDCCYDNRENPISSWNVKRARDIHLTVEQ 360
Query: 361 RGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQRLSFQVPGSERQLLSSRCSLAKYGIFS 420
RGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQRLSFQVPGSERQLLSSRCSLAKYGIFS
Sbjct: 361 RGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQRLSFQVPGSERQLLSSRCSLAKYGIFS 420
Query: 421 HTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG 480
HTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG
Sbjct: 421 HTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG 480
Query: 481 QVLQDWLGLGIYGIQDSDTLILSKKKGEALFPAS 514
QVLQDWLGLGIYGIQDSDTLILSKKKGEALFPAS
Sbjct: 481 QVLQDWLGLGIYGIQDSDTLILSKKKGEALFPAS 514
>gi|38016930 2'-5'-oligoadenylate synthetase-like isoform b [Homo
sapiens]
Length = 255
Score = 446 bits (1148), Expect = e-125
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR 60
MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR
Sbjct: 1 MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR 60
Query: 61 VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD 120
VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD
Sbjct: 61 VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD 120
Query: 121 LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA 180
LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA
Sbjct: 121 LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA 180
Query: 181 CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQ 219
CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQ
Sbjct: 181 CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQ 219
>gi|45007007 2'-5'oligoadenylate synthetase 3 [Homo sapiens]
Length = 1087
Score = 266 bits (680), Expect = 3e-71
Identities = 142/348 (40%), Positives = 207/348 (59%), Gaps = 11/348 (3%)
Query: 7 LYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVK 66
LY TPA LD F++++LQP+R++ +V AV T+ FL++ F+ + ++V+KVVK
Sbjct: 747 LYQTPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFR-----NSPIKVIKVVK 801
Query: 67 VGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLE 124
GS GT LR + +LV FLSCF F E +++ I + Q + ++ E
Sbjct: 802 GGSSAKGTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFE 861
Query: 125 DLRMEQRVPDALVFTIQTRGTAEP-ITVTIVPAYRALGPSLPNSQPPPEVYVSLIKACGG 183
+ E P L F++ ++ + + ++PA+ ALG + S+P +VYV LI +
Sbjct: 862 VSKWEN--PRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIHSYSN 919
Query: 184 PGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLTIYA 243
G + F+ELQR+F+ RPTKLKSL+RLVKHWYQQ K R +LPP + LELLT+YA
Sbjct: 920 AGEYSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYA 979
Query: 244 WEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKERPII 303
WE G +D F + EGF TV++L+ +Y +CIYWT Y + + D +++QL+K RPII
Sbjct: 980 WEQG-GKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPII 1038
Query: 304 LDPADPTLNVAEGYRWDIVAQRASQCLKQDCCYDNRENPISSWNVKRA 351
LDPADPT N+ RWD++A+ A+ C CC PI W VK A
Sbjct: 1039 LDPADPTGNLGHNARWDLLAKEAAACTSALCCMGRNGIPIQPWPVKAA 1086
Score = 239 bits (611), Expect = 3e-63
Identities = 137/346 (39%), Positives = 201/346 (58%), Gaps = 12/346 (3%)
Query: 6 ELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVV 65
+LYSTPA+ LD FVA+ LQP +E+ E+ A+ + LR+ +G R RVLK V
Sbjct: 2 DLYSTPAAALDRFVARRLQPRKEFVEKARRALGALAAALRE---RGGRLGAAAPRVLKTV 58
Query: 66 KVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVL---RLIWKTMWQSQDLLDLG 122
K GS G GT L+ + ELV FL CF S+ + ++L R ++ WQ+ G
Sbjct: 59 KGGSSGRGTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVP---G 115
Query: 123 LEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKACG 182
L EQ VP AL F + + + + V++VPA+ LG + +P P+VY +L+ +
Sbjct: 116 LRLTFPEQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLNSGC 175
Query: 183 GPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLTIY 242
G F+EL+RNFV RP KLK+L+ LVKHWY Q + LPP+YALELLTI+
Sbjct: 176 QGGEHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIF 235
Query: 243 AWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKERPI 302
AWE G ++D F L EG TV+ L+ +++ +C++WT Y + + +++QLK+ RP+
Sbjct: 236 AWEQGCKKDA-FSLAEGLRTVLGLIQQHQHLCVFWTVNYGFEDPAVGQFLQRQLKRPRPV 294
Query: 303 ILDPADPTLNVAEG--YRWDIVAQRASQCLKQDCCYDNRENPISSW 346
ILDPADPT ++ G + WD++AQ A+ C C +P+ SW
Sbjct: 295 ILDPADPTWDLGNGAAWHWDLLAQEAASCYDHPCFLRGMGDPVQSW 340
Score = 211 bits (537), Expect = 1e-54
Identities = 126/353 (35%), Positives = 195/353 (55%), Gaps = 21/353 (5%)
Query: 6 ELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVV 65
+L P LD F+ L+P +++E+V A+ + L + + +V
Sbjct: 407 DLSQIPTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVH---------KASRVS 457
Query: 66 KVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVL---RLIWKTMWQSQDLLDLG 122
K GSFG GT LR +VEL+ FL+CF +++ ++L R ++ WQ Q + L
Sbjct: 458 KGGSFGRGTDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQ-VPSLS 516
Query: 123 LEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKACG 182
L+ EQ VP+AL F + + V+++PA+ A+G ++P P+VY L+ +
Sbjct: 517 LQF--PEQNVPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLTSGC 574
Query: 183 GPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYV---KARSPR-ANLPPLYALEL 238
G F+EL+RNF+ RP KLK+L+ LVKHWY+Q K + P A+LPP YALEL
Sbjct: 575 QEGEHKACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALEL 634
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LTI+AWE G +D F + +GF TV+ L+ +++ +C+YWT Y+ + + + QL+K
Sbjct: 635 LTIFAWEQGCRQD-CFNMAQGFRTVLGLVQQHQQLCVYWTVNYSTEDPAMRMHLLGQLRK 693
Query: 299 ERPIILDPADPTLNVAEGYRWDIVAQRASQCLKQDCCYDNRENPISSWNVKRA 351
RP++LDPADPT NV G W+++AQ A+ Q C + W+V A
Sbjct: 694 PRPLVLDPADPTWNVGHG-SWELLAQEAAALGMQACFLSRDGTSVQPWDVMPA 745
>gi|74229015 2',5'-oligoadenylate synthetase 1 isoform 3 [Homo
sapiens]
Length = 414
Score = 240 bits (613), Expect = 2e-63
Identities = 141/350 (40%), Positives = 198/350 (56%), Gaps = 14/350 (4%)
Query: 4 MQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLK 63
M +L +TPA LD F+ +L P ++ ++ A+ + FL++ F RG V V K
Sbjct: 1 MMDLRNTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCF---RGSSYPVCVSK 57
Query: 64 VVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDL 121
VVK GS G GT LR + +LV FLS +FQ+ + ++ I + + Q + +
Sbjct: 58 VVKGGSSGKGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSV 117
Query: 122 GLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC 181
E P AL F + + E + ++PA+ ALG +P P++YV LI+ C
Sbjct: 118 KFEVQAPRWGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEEC 177
Query: 182 GG---PGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
G F F+ELQR+F+K RPTKLKSL+RLVKHWYQ + LPP YALEL
Sbjct: 178 TDLQKEGEFSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQN---CKKKLGKLPPQYALEL 234
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LT+YAWE G+ + +F +GF TV++L++ Y+ +CIYWTKYY N IIE +R+QL K
Sbjct: 235 LTVYAWERGSMKT-HFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTK 293
Query: 299 ERPIILDPADPTLNVAEG--YRWDIVAQRASQCLKQDCCYDNRENPISSW 346
RP+ILDPADPT N+ G W +AQ A L C + +P+SSW
Sbjct: 294 PRPVILDPADPTGNLGGGDPKGWRQLAQEAEAWLNYPCFKNWDGSPVSSW 343
>gi|74229013 2',5'-oligoadenylate synthetase 1 isoform 1 [Homo
sapiens]
Length = 400
Score = 240 bits (613), Expect = 2e-63
Identities = 141/350 (40%), Positives = 198/350 (56%), Gaps = 14/350 (4%)
Query: 4 MQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLK 63
M +L +TPA LD F+ +L P ++ ++ A+ + FL++ F RG V V K
Sbjct: 1 MMDLRNTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCF---RGSSYPVCVSK 57
Query: 64 VVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDL 121
VVK GS G GT LR + +LV FLS +FQ+ + ++ I + + Q + +
Sbjct: 58 VVKGGSSGKGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSV 117
Query: 122 GLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC 181
E P AL F + + E + ++PA+ ALG +P P++YV LI+ C
Sbjct: 118 KFEVQAPRWGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEEC 177
Query: 182 GG---PGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
G F F+ELQR+F+K RPTKLKSL+RLVKHWYQ + LPP YALEL
Sbjct: 178 TDLQKEGEFSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQN---CKKKLGKLPPQYALEL 234
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LT+YAWE G+ + +F +GF TV++L++ Y+ +CIYWTKYY N IIE +R+QL K
Sbjct: 235 LTVYAWERGSMKT-HFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTK 293
Query: 299 ERPIILDPADPTLNVAEG--YRWDIVAQRASQCLKQDCCYDNRENPISSW 346
RP+ILDPADPT N+ G W +AQ A L C + +P+SSW
Sbjct: 294 PRPVILDPADPTGNLGGGDPKGWRQLAQEAEAWLNYPCFKNWDGSPVSSW 343
>gi|74229011 2',5'-oligoadenylate synthetase 1 isoform 2 [Homo
sapiens]
Length = 364
Score = 240 bits (613), Expect = 2e-63
Identities = 141/350 (40%), Positives = 198/350 (56%), Gaps = 14/350 (4%)
Query: 4 MQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLK 63
M +L +TPA LD F+ +L P ++ ++ A+ + FL++ F RG V V K
Sbjct: 1 MMDLRNTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCF---RGSSYPVCVSK 57
Query: 64 VVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDL 121
VVK GS G GT LR + +LV FLS +FQ+ + ++ I + + Q + +
Sbjct: 58 VVKGGSSGKGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSV 117
Query: 122 GLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC 181
E P AL F + + E + ++PA+ ALG +P P++YV LI+ C
Sbjct: 118 KFEVQAPRWGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEEC 177
Query: 182 GG---PGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
G F F+ELQR+F+K RPTKLKSL+RLVKHWYQ + LPP YALEL
Sbjct: 178 TDLQKEGEFSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQN---CKKKLGKLPPQYALEL 234
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LT+YAWE G+ + +F +GF TV++L++ Y+ +CIYWTKYY N IIE +R+QL K
Sbjct: 235 LTVYAWERGSMKT-HFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTK 293
Query: 299 ERPIILDPADPTLNVAEG--YRWDIVAQRASQCLKQDCCYDNRENPISSW 346
RP+ILDPADPT N+ G W +AQ A L C + +P+SSW
Sbjct: 294 PRPVILDPADPTGNLGGGDPKGWRQLAQEAEAWLNYPCFKNWDGSPVSSW 343
>gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo
sapiens]
Length = 687
Score = 228 bits (582), Expect = 8e-60
Identities = 127/352 (36%), Positives = 201/352 (57%), Gaps = 19/352 (5%)
Query: 7 LYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVK 66
L++TP LD F+ ++LQP++ + E++ AV + FL++ F+ Q +++V+
Sbjct: 340 LFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFR------QSTAKIQIVR 393
Query: 67 VGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIW---KTMW-QSQDLLDLG 122
GS GT L++ + +LV F + S+ +++ I K W + ++ L++
Sbjct: 394 GGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVS 453
Query: 123 LEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLI---K 179
E + + P L F+++++ E ++ ++PA+ ALG S P PEVY LI K
Sbjct: 454 FEPPKW--KAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYK 511
Query: 180 ACGGPGN-FCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
+ PG F F+ LQRNF++ RPTKLK L+RLVKHWY++ + P+ +LPP YALEL
Sbjct: 512 SSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGSLPPKYALEL 571
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LTIYAWE G+ + F EGF TV++L+ +Y+ +CI+W Y + + + QL+K
Sbjct: 572 LTIYAWEQGSGVPD-FDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQK 630
Query: 299 ERPIILDPADPTLNVAEGYR--WDIVAQRASQCLKQDCCYDNRENPISSWNV 348
RP+ILDPA+PT +V G R W ++A+ A + L C D NPI W V
Sbjct: 631 TRPVILDPAEPTGDVGGGDRWCWHLLAKEAKEWLSSPCFKDGTGNPIPPWKV 682
Score = 169 bits (429), Expect = 4e-42
Identities = 122/351 (34%), Positives = 179/351 (50%), Gaps = 30/351 (8%)
Query: 6 ELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVV 65
+L S PA +L F+ ++L+P+ E + + + V T+ + L++ +Q V V
Sbjct: 7 QLSSVPAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEP--------EQFPLVQGVA 58
Query: 66 KVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLDLGL-- 123
GS+G TVLR + LV F S FQ+ + +D+L ++ D L L
Sbjct: 59 IGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILD-------KTGDKLKFCLFT 111
Query: 124 EDLRMEQRVPDALV-FTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYV----SLI 178
+ L+ + +L FTIQ + I+ ++ A+ AL N P P +Y SL
Sbjct: 112 KWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLD 168
Query: 179 KACGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
K PG F F+ELQ+ F +RP KLK L+ L+KHW+QQ K +L P YALEL
Sbjct: 169 KTNASPGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALEL 227
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LT+YAWE G +D NF + EG TV++L+ E +CIYW Y + I + + QL+
Sbjct: 228 LTVYAWEQGCRKD-NFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQS 286
Query: 299 ERPIILDPADPTLNVA-EGYRWDIVAQRASQCLKQDCCYDNRENPISSWNV 348
RP+ILDP DPT NV+ + W + + A L + E P SWNV
Sbjct: 287 ARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNL--DNELPAPSWNV 335
>gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo
sapiens]
Length = 719
Score = 228 bits (582), Expect = 8e-60
Identities = 127/352 (36%), Positives = 201/352 (57%), Gaps = 19/352 (5%)
Query: 7 LYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVK 66
L++TP LD F+ ++LQP++ + E++ AV + FL++ F+ Q +++V+
Sbjct: 340 LFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFR------QSTAKIQIVR 393
Query: 67 VGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIW---KTMW-QSQDLLDLG 122
GS GT L++ + +LV F + S+ +++ I K W + ++ L++
Sbjct: 394 GGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVS 453
Query: 123 LEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLI---K 179
E + + P L F+++++ E ++ ++PA+ ALG S P PEVY LI K
Sbjct: 454 FEPPKW--KAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYK 511
Query: 180 ACGGPGN-FCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
+ PG F F+ LQRNF++ RPTKLK L+RLVKHWY++ + P+ +LPP YALEL
Sbjct: 512 SSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGSLPPKYALEL 571
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LTIYAWE G+ + F EGF TV++L+ +Y+ +CI+W Y + + + QL+K
Sbjct: 572 LTIYAWEQGSGVPD-FDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQK 630
Query: 299 ERPIILDPADPTLNVAEGYR--WDIVAQRASQCLKQDCCYDNRENPISSWNV 348
RP+ILDPA+PT +V G R W ++A+ A + L C D NPI W V
Sbjct: 631 TRPVILDPAEPTGDVGGGDRWCWHLLAKEAKEWLSSPCFKDGTGNPIPPWKV 682
Score = 169 bits (429), Expect = 4e-42
Identities = 122/351 (34%), Positives = 179/351 (50%), Gaps = 30/351 (8%)
Query: 6 ELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVV 65
+L S PA +L F+ ++L+P+ E + + + V T+ + L++ +Q V V
Sbjct: 7 QLSSVPAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEP--------EQFPLVQGVA 58
Query: 66 KVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLDLGL-- 123
GS+G TVLR + LV F S FQ+ + +D+L ++ D L L
Sbjct: 59 IGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILD-------KTGDKLKFCLFT 111
Query: 124 EDLRMEQRVPDALV-FTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYV----SLI 178
+ L+ + +L FTIQ + I+ ++ A+ AL N P P +Y SL
Sbjct: 112 KWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLD 168
Query: 179 KACGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALEL 238
K PG F F+ELQ+ F +RP KLK L+ L+KHW+QQ K +L P YALEL
Sbjct: 169 KTNASPGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALEL 227
Query: 239 LTIYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKK 298
LT+YAWE G +D NF + EG TV++L+ E +CIYW Y + I + + QL+
Sbjct: 228 LTVYAWEQGCRKD-NFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQS 286
Query: 299 ERPIILDPADPTLNVA-EGYRWDIVAQRASQCLKQDCCYDNRENPISSWNV 348
RP+ILDP DPT NV+ + W + + A L + E P SWNV
Sbjct: 287 ARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNL--DNELPAPSWNV 335
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 73.2 bits (178), Expect = 5e-13
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGY-SG 391
+S +N+++ +HL + RG L V P + I VK KI+ G S
Sbjct: 132 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSD 191
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 192 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 246
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT--LILSKKKGEA 509
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ T L+L + G
Sbjct: 247 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 306
Query: 510 LF 511
+F
Sbjct: 307 IF 308
Score = 71.6 bits (174), Expect = 2e-12
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 56 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 115
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 116 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT--LILSKKKGEA 509
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ T L+L + G
Sbjct: 171 PSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 230
Query: 510 LF 511
+F
Sbjct: 231 IF 232
Score = 71.2 bits (173), Expect = 2e-12
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 208 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 267
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 268 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 322
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT--LILSKKKGEA 509
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ T L+L + G
Sbjct: 323 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 382
Query: 510 LF 511
+F
Sbjct: 383 IF 384
Score = 71.2 bits (173), Expect = 2e-12
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 284 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 343
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 344 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 398
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT--LILSKKKGEA 509
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ T L+L + G
Sbjct: 399 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 458
Query: 510 LF 511
+F
Sbjct: 459 IF 460
Score = 71.2 bits (173), Expect = 2e-12
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 360 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 419
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 420 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 474
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT--LILSKKKGEA 509
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ T L+L + G
Sbjct: 475 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 534
Query: 510 LF 511
+F
Sbjct: 535 IF 536
Score = 71.2 bits (173), Expect = 2e-12
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 436 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 495
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 496 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 550
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT--LILSKKKGEA 509
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ T L+L + G
Sbjct: 551 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 610
Query: 510 LF 511
+F
Sbjct: 611 IF 612
Score = 70.9 bits (172), Expect = 3e-12
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 512 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 571
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 572 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 626
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLIL 502
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ TL L
Sbjct: 627 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 677
Score = 65.5 bits (158), Expect = 1e-10
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 368 LIVNPYEPIRKVKEKIRRTRGYS-GLQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYL 426
L V P + I VK KI+ G QRL F + +QL R +L+ Y I + ++L
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF----AGKQLEDGR-TLSDYNIQKESTLHL 69
Query: 427 LETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW 486
+ + +Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D
Sbjct: 70 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
Query: 487 LGLGIYGIQDSDT--LILSKKKGEALF 511
L Y IQ T L+L + G +F
Sbjct: 130 RTLSDYNIQKESTLHLVLRLRGGMQIF 156
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 494 IQDSDT--LILSKKKGEALF 511
IQ T L+L + G +F
Sbjct: 61 IQKESTLHLVLRLRGGMQIF 80
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 70.9 bits (172), Expect = 3e-12
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 56 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 115
Query: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 116 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
Query: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLIL 502
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ TL L
Sbjct: 171 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221
Score = 65.5 bits (158), Expect = 1e-10
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 368 LIVNPYEPIRKVKEKIRRTRGYS-GLQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYL 426
L V P + I VK KI+ G QRL F + +QL R +L+ Y I + ++L
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF----AGKQLEDGR-TLSDYNIQKESTLHL 69
Query: 427 LETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW 486
+ + +Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D
Sbjct: 70 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
Query: 487 LGLGIYGIQDSDT--LILSKKKGEALF 511
L Y IQ T L+L + G +F
Sbjct: 130 RTLSDYNIQKESTLHLVLRLRGGMQIF 156
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 494 IQDSDT--LILSKKKGEALF 511
IQ T L+L + G +F
Sbjct: 61 IQKESTLHLVLRLRGGMQIF 80
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 494 IQDSDTLIL 502
IQ TL L
Sbjct: 61 IQKESTLHL 69
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 494 IQDSDTLIL 502
IQ TL L
Sbjct: 61 IQKESTLHL 69
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 494 IQDSDTLIL 502
IQ TL L
Sbjct: 61 IQKESTLHL 69
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 494 IQDSDTLIL 502
IQ TL L
Sbjct: 61 IQKESTLHL 69
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 356 LTVEQRGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQ-RLSFQVPGSERQLLSSRCSLA 414
LTV+ +F + ++ + ++K +I + G Q RL+ G L R LA
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA---LQDRVPLA 61
Query: 415 KYGIF-SHTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ 473
G+ T + +++ + + V+N G S Y + + LKQQ+ +G+
Sbjct: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 474 QQLEFQGQVLQDWLGLGIYGIQDSDTLILS 503
L F+G+ L+D L LG YG++ T+ ++
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151
>gi|74229021 2'-5'-oligoadenylate synthetase 2 isoform 3 [Homo
sapiens]
Length = 172
Score = 48.1 bits (113), Expect = 2e-05
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 6 ELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVV 65
+L S PA +L F+ ++L+P+ E + + + V T+ + L++ +Q V V
Sbjct: 7 QLSSVPAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEP--------EQFPLVQGVA 58
Query: 66 KVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVL 105
GS+G TVLR + LV F S FQ+ + +D+L
Sbjct: 59 IGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDIL 98
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 47.8 bits (112), Expect = 2e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 432 SEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 491
+++Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L
Sbjct: 67 TKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 126
Query: 492 YGIQDSDTLIL 502
IQ TL L
Sbjct: 127 CNIQKEPTLHL 137
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 47.8 bits (112), Expect = 2e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 432 SEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 491
+++Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L
Sbjct: 67 TKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 126
Query: 492 YGIQDSDTLIL 502
IQ TL L
Sbjct: 127 CNIQKEPTLHL 137
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 47.8 bits (112), Expect = 2e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 432 SEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 491
+++Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L
Sbjct: 67 TKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 126
Query: 492 YGIQDSDTLIL 502
IQ TL L
Sbjct: 127 CNIQKEPTLHL 137
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 43.1 bits (100), Expect = 6e-04
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 354 IHLTVEQRGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQRLSFQVPGSERQLLSSRCSL 413
+H+ E+ F+ NPY+ ++K+KE +R + QV ++L R SL
Sbjct: 10 VHVRSEEWDLMTFD--ANPYDSVKKIKEHVRSKTKVP----VQDQVLLLGSKILKPRRSL 63
Query: 414 AKYGIFSHTHIYLLETI--PS--EIQVFV--KNPDGGSYAYAINPNSFILGLKQQIEDQQ 467
+ YGI I+L + PS E+ +F+ + + + +S + +K IE +
Sbjct: 64 SSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKT 123
Query: 468 GLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILS 503
G+ + Q + G+ L+D + YGI+ + L L+
Sbjct: 124 GIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLA 159
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.2 bits (82), Expect = 0.073
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 431 PSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 490
P ++V VK D + + + + K+ I +P ++Q+L +QG+VLQD L
Sbjct: 14 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 73
Query: 491 IYGI 494
Y +
Sbjct: 74 EYNV 77
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.2 bits (82), Expect = 0.073
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 431 PSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 490
P ++V VK D + + + + K+ I +P ++Q+L +QG+VLQD L
Sbjct: 14 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 73
Query: 491 IYGI 494
Y +
Sbjct: 74 EYNV 77
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.2 bits (82), Expect = 0.073
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 431 PSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 490
P ++V VK D + + + + K+ I +P ++Q+L +QG+VLQD L
Sbjct: 14 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 73
Query: 491 IYGI 494
Y +
Sbjct: 74 EYNV 77
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 36.2 bits (82), Expect = 0.073
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 431 PSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 490
P ++V VK D + + + + K+ I +P ++Q+L +QG+VLQD L
Sbjct: 14 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 73
Query: 491 IYGI 494
Y +
Sbjct: 74 EYNV 77
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLG 490
+QV +K ++ I+P + LK++IE ++G P Q+L + G++L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 491 IYGIQDSDTLILSKKKGEAL 510
Y I + + +++ K +A+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAV 80
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 34.7 bits (78), Expect = 0.21
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
+Q+ VK G + + + + LKQ + ++ +P +QQ+L F+G+ L D L Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 494 IQDSDTLILSKK 505
I + L L K
Sbjct: 61 IGPNSKLNLVVK 72
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 33.9 bits (76), Expect = 0.36
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 438 VKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD 485
VK G I P + +K+++E+++G+P +QQ+L + G+ + D
Sbjct: 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND 52
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 123 LEDLRMEQRVPDALVFTIQTRGTAE-----PITVTIVPAYRALGPSLPNSQPPPEVYVSL 177
L L++ Q + +V T+ G + PIT + PA S P+ P PE L
Sbjct: 983 LSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAPASLPARVSCPSPHPSPEARAPL 1042
Query: 178 IKACGGPGN 186
A GPG+
Sbjct: 1043 ASASPGPGD 1051
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 123 LEDLRMEQRVPDALVFTIQTRGTAE-----PITVTIVPAYRALGPSLPNSQPPPEVYVSL 177
L L++ Q + +V T+ G + PIT + PA S P+ P PE L
Sbjct: 1043 LSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAPASLPARVSCPSPHPSPEARAPL 1102
Query: 178 IKACGGPGN 186
A GPG+
Sbjct: 1103 ASASPGPGD 1111
>gi|5454180 zinc finger protein 193 [Homo sapiens]
Length = 394
Score = 31.2 bits (69), Expect = 2.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 13 SRLDSFVAQWLQPHREWKEEVLDAVRTVEEFL 44
+RL QWL+PH KE++LD + +E+FL
Sbjct: 71 TRLQELCYQWLRPHVSTKEQILDLL-VLEQFL 101
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,999,244
Number of Sequences: 37866
Number of extensions: 973039
Number of successful extensions: 2522
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2401
Number of HSP's gapped (non-prelim): 84
length of query: 514
length of database: 18,247,518
effective HSP length: 107
effective length of query: 407
effective length of database: 14,195,856
effective search space: 5777713392
effective search space used: 5777713392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.