Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 102467481
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|102467481 sphingomyelin phosphodiesterase 4 isoform 2 [Homo
sapiens]
(866 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|102467481 sphingomyelin phosphodiesterase 4 isoform 2 [Homo s... 1761 0.0
gi|102467484 sphingomyelin phosphodiesterase 4 isoform 1 [Homo s... 1690 0.0
gi|160420295 hypothetical protein LOC85459 [Homo sapiens] 39 0.021
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 33 1.1
gi|78000158 eukaryotic translation initiation factor 2B, subunit... 32 1.9
gi|78000156 eukaryotic translation initiation factor 2B, subunit... 32 1.9
gi|187607323 eukaryotic translation initiation factor 2B, subuni... 32 1.9
gi|23510413 sorting nexin 26 [Homo sapiens] 32 1.9
gi|18959210 WIRE protein [Homo sapiens] 32 1.9
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 32 1.9
gi|167466173 heat shock 70kDa protein 1B [Homo sapiens] 32 2.5
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 32 2.5
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 32 2.5
gi|194248072 heat shock 70kDa protein 1A [Homo sapiens] 32 2.5
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 32 2.5
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 32 2.5
gi|11386183 WAS protein family, member 2 [Homo sapiens] 32 2.5
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 32 2.5
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 32 2.5
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 32 2.5
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 32 3.3
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 32 3.3
gi|55741571 leucine rich repeat and fibronectin type III domain ... 32 3.3
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 32 3.3
gi|38505213 YTH domain containing 2 [Homo sapiens] 32 3.3
gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 32 3.3
gi|12232415 hypothetical protein LOC64762 [Homo sapiens] 31 4.3
gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens] 31 4.3
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 31 4.3
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 31 5.7
>gi|102467481 sphingomyelin phosphodiesterase 4 isoform 2 [Homo
sapiens]
Length = 866
Score = 1761 bits (4561), Expect = 0.0
Identities = 866/866 (100%), Positives = 866/866 (100%)
Query: 1 MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPHLQQPSFLLASLKADSI 60
MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPHLQQPSFLLASLKADSI
Sbjct: 1 MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPHLQQPSFLLASLKADSI 60
Query: 61 NKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYS 120
NKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYS
Sbjct: 61 NKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYS 120
Query: 121 IVMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTP 180
IVMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTP
Sbjct: 121 IVMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTP 180
Query: 181 TGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGS 240
TGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGS
Sbjct: 181 TGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGS 240
Query: 241 VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSET 300
VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSET
Sbjct: 241 VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSET 300
Query: 301 LLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFT 360
LLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFT
Sbjct: 301 LLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFT 360
Query: 361 PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFL 420
PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFL
Sbjct: 361 PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFL 420
Query: 421 QHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMY 480
QHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMY
Sbjct: 421 QHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMY 480
Query: 481 TKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQH 540
TKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQH
Sbjct: 481 TKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQH 540
Query: 541 RLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTLVLRLAQLI 600
RLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTLVLRLAQLI
Sbjct: 541 RLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTLVLRLAQLI 600
Query: 601 TQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEK 660
TQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEK
Sbjct: 601 TQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEK 660
Query: 661 ALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILTPLGRYQIINGLR 720
ALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILTPLGRYQIINGLR
Sbjct: 661 ALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILTPLGRYQIINGLR 720
Query: 721 RFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHL 780
RFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHL
Sbjct: 721 RFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHL 780
Query: 781 TEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLFCVGPLPCT 840
TEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLFCVGPLPCT
Sbjct: 781 TEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLFCVGPLPCT 840
Query: 841 LLLTLGYVLYASAMTLLTERGKLHQP 866
LLLTLGYVLYASAMTLLTERGKLHQP
Sbjct: 841 LLLTLGYVLYASAMTLLTERGKLHQP 866
>gi|102467484 sphingomyelin phosphodiesterase 4 isoform 1 [Homo
sapiens]
Length = 837
Score = 1690 bits (4377), Expect = 0.0
Identities = 837/866 (96%), Positives = 837/866 (96%), Gaps = 29/866 (3%)
Query: 1 MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPHLQQPSFLLASLKADSI 60
MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPHLQQPSFLLASLKADSI
Sbjct: 1 MTTFGAVAEWRLPSLRRATLWIPQWFAKKAIFNSPLEAAMAFPHLQQPSFLLASLKADSI 60
Query: 61 NKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYS 120
NKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYS
Sbjct: 61 NKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYS 120
Query: 121 IVMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTP 180
IVMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTP
Sbjct: 121 IVMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTP 180
Query: 181 TGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGS 240
TGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGS
Sbjct: 181 TGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGS 240
Query: 241 VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSET 300
VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSET
Sbjct: 241 VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSET 300
Query: 301 LLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFT 360
LLQVFVEMWLHHYSLEMYQKMQSPHAK ESFT
Sbjct: 301 LLQVFVEMWLHHYSLEMYQKMQSPHAK-----------------------------ESFT 331
Query: 361 PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFL 420
PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFL
Sbjct: 332 PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFL 391
Query: 421 QHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMY 480
QHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMY
Sbjct: 392 QHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMY 451
Query: 481 TKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQH 540
TKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQH
Sbjct: 452 TKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQH 511
Query: 541 RLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTLVLRLAQLI 600
RLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTLVLRLAQLI
Sbjct: 512 RLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTLVLRLAQLI 571
Query: 601 TQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEK 660
TQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEK
Sbjct: 572 TQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEK 631
Query: 661 ALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILTPLGRYQIINGLR 720
ALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILTPLGRYQIINGLR
Sbjct: 632 ALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILTPLGRYQIINGLR 691
Query: 721 RFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHL 780
RFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHL
Sbjct: 692 RFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHL 751
Query: 781 TEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLFCVGPLPCT 840
TEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLFCVGPLPCT
Sbjct: 752 TEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLFCVGPLPCT 811
Query: 841 LLLTLGYVLYASAMTLLTERGKLHQP 866
LLLTLGYVLYASAMTLLTERGKLHQP
Sbjct: 812 LLLTLGYVLYASAMTLLTERGKLHQP 837
>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
Length = 2601
Score = 38.9 bits (89), Expect = 0.021
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 316 EMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFTPTEEHVLVVRL---- 371
E K+ S H ++ L RL S L P Q +L+AL QE E +++ R
Sbjct: 1318 ESESKIFSSHLQIPQLQDRLLRISQLIQPQQDNLKAL---QEQLATQREAIILARQEARE 1374
Query: 372 -LLKHLHAFANSLKPEQASPSA------HSHATSPLEEFKRAAVP 409
LL H + + PEQ S+ HS A+ PL E +R P
Sbjct: 1375 ELLLHQSEWEGRISPEQVDTSSLPLVPQHSFASLPLNESERNQEP 1419
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 235 LPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNA 288
+P+ G VP P + P SPS P A+ S H+ K+ + + S+ A
Sbjct: 2145 VPSGGPVPSPQTYRPSSASPSGKPSGSAVNMGSVQGHYVQQAKQRVDEKPSLGA 2198
>gi|78000158 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 2 [Homo sapiens]
Length = 523
Score = 32.3 bits (72), Expect = 1.9
Identities = 51/203 (25%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 238 EGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWR 297
+G PP S S G +PS R P P L L+K+ Q D +
Sbjct: 122 QGGPPPKASPSTAGETPSGVKRLPEYPQVD-DLLLRRLVKKPERQQVPTRKD------YG 174
Query: 298 SETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPS----LQALH 353
S+ L + + SL + + S ++ L S L S + L+AL
Sbjct: 175 SKVSLFSHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQ 234
Query: 354 AYQESFT--PTEEHVLVVRLLLKHLHAFANSLKPEQAS---------PSAHSHATSPLEE 402
+ +T P EE + LK +F +P AS S +S EE
Sbjct: 235 QVIQDYTTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREE 294
Query: 403 FK----RAAVPRFVQQKLYLFLQ 421
RAA+ R+VQ+K+ L Q
Sbjct: 295 EAKSELRAAIDRYVQEKIVLAAQ 317
>gi|78000156 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 3 [Homo sapiens]
Length = 522
Score = 32.3 bits (72), Expect = 1.9
Identities = 51/203 (25%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 238 EGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWR 297
+G PP S S G +PS R P P L L+K+ Q D +
Sbjct: 121 QGGPPPKASPSTAGETPSGVKRLPEYPQVD-DLLLRRLVKKPERQQVPTRKD------YG 173
Query: 298 SETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPS----LQALH 353
S+ L + + SL + + S ++ L S L S + L+AL
Sbjct: 174 SKVSLFSHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQ 233
Query: 354 AYQESFT--PTEEHVLVVRLLLKHLHAFANSLKPEQAS---------PSAHSHATSPLEE 402
+ +T P EE + LK +F +P AS S +S EE
Sbjct: 234 QVIQDYTTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREE 293
Query: 403 FK----RAAVPRFVQQKLYLFLQ 421
RAA+ R+VQ+K+ L Q
Sbjct: 294 EAKSELRAAIDRYVQEKIVLAAQ 316
>gi|187607323 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 1 [Homo sapiens]
Length = 543
Score = 32.3 bits (72), Expect = 1.9
Identities = 51/203 (25%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 238 EGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWR 297
+G PP S S G +PS R P P L L+K+ Q D +
Sbjct: 142 QGGPPPKASPSTAGETPSGVKRLPEYPQVD-DLLLRRLVKKPERQQVPTRKD------YG 194
Query: 298 SETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPS----LQALH 353
S+ L + + SL + + S ++ L S L S + L+AL
Sbjct: 195 SKVSLFSHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQ 254
Query: 354 AYQESFT--PTEEHVLVVRLLLKHLHAFANSLKPEQAS---------PSAHSHATSPLEE 402
+ +T P EE + LK +F +P AS S +S EE
Sbjct: 255 QVIQDYTTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREE 314
Query: 403 FK----RAAVPRFVQQKLYLFLQ 421
RAA+ R+VQ+K+ L Q
Sbjct: 315 EAKSELRAAIDRYVQEKIVLAAQ 337
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 32.3 bits (72), Expect = 1.9
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 242 PPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRSETL 301
PPPLS G +P PPP+ PA A + S Q PAS +
Sbjct: 716 PPPLSLLRPGGAPPPPPKNPARLMALALAERAQQVAEQQSQQECGGTPPASQSPFHRSLS 775
Query: 302 LQV 304
L+V
Sbjct: 776 LEV 778
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 32.3 bits (72), Expect = 1.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 236 PTEGSVPPPLSSSPGGTSPSPPP 258
P+ G PPP S +P G P PPP
Sbjct: 354 PSRGKPPPPPSRTPAGPPPPPPP 376
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 32.3 bits (72), Expect = 1.9
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 25/116 (21%)
Query: 242 PPPLSSS-----PG----GTSPS-------PPPRTPAIPFASYGLHHTSLLKRH-ISHQT 284
PPPL ++ PG G P+ PPP +IPF G+ H ++ + H + ++
Sbjct: 1266 PPPLPNNSRPLTPGTVVYGPPPAGAPMVYGPPPPNFSIPFIPMGVLHCNVPEHHNLENEV 1325
Query: 285 SVNADPASH-------EIWRSETLLQVFVEM-WLHHYSLEMYQKMQSPHAKLEVLH 332
S D H E W + Q EM LHH ++ Q+ +S ++E LH
Sbjct: 1326 SRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELH 1381
>gi|167466173 heat shock 70kDa protein 1B [Homo sapiens]
Length = 641
Score = 32.0 bits (71), Expect = 2.5
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 629 FSSMDTNGSYTANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQD 688
F +D S T +E+ D R T E +EKAL + L +AQ+ L G+T+
Sbjct: 288 FEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAK----LDKAQIHDLVLVGGSTRI 343
Query: 689 ENGKKQLPDCIVGED 703
+K L D G D
Sbjct: 344 PKVQKLLQDFFNGRD 358
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 32.0 bits (71), Expect = 2.5
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 641 NDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIV 700
ND + QDS+RK D+ +E+ E LR+ +++ R+ LA + N +KQ+ + ++
Sbjct: 822 NDSSQQLQDSLRKKDDRIEELEEALRESVQITAE--REMVLAQEESARTNAEKQVEELLM 879
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 32.0 bits (71), Expect = 2.5
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 641 NDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIV 700
ND + QDS+RK D+ +E+ E LR+ +++ R+ LA + N +KQ+ + ++
Sbjct: 794 NDSSQQLQDSLRKKDDRIEELEEALRESVQITAE--REMVLAQEESARTNAEKQVEELLM 851
>gi|194248072 heat shock 70kDa protein 1A [Homo sapiens]
Length = 641
Score = 32.0 bits (71), Expect = 2.5
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 629 FSSMDTNGSYTANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQD 688
F +D S T +E+ D R T E +EKAL + L +AQ+ L G+T+
Sbjct: 288 FEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAK----LDKAQIHDLVLVGGSTRI 343
Query: 689 ENGKKQLPDCIVGED 703
+K L D G D
Sbjct: 344 PKVQKLLQDFFNGRD 358
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 235 LPTEGS---VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHIS 281
LP G P L+ +PG +PSPPP P S+ L S L R +S
Sbjct: 256 LPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHLVRKVS 305
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 235 LPTEGS---VPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHIS 281
LP G P L+ +PG +PSPPP P S+ L S L R +S
Sbjct: 256 LPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHLVRKVS 305
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 32.0 bits (71), Expect = 2.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 242 PPPLSSSPGGTSPSPPPRTPAIP 264
PPPLS GG P PPP P P
Sbjct: 380 PPPLSQPTGGAPPPPPPPPPPGP 402
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 32.0 bits (71), Expect = 2.5
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 576 GQDCKYTPMFG-----PEARTLVLRLAQLITQAKHTAKSI--SDQCAESPAGHSFLSWL- 627
G++ + P +G P A+ +VL L+ A A I DQ H+ + +
Sbjct: 344 GKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTIT 403
Query: 628 GFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQ 687
G S++ +GS ++ Q R K L YL+QI L L +F LG
Sbjct: 404 GMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYL----LEKFVAVLGGNI 459
Query: 688 DENGKKQ 694
+N Q
Sbjct: 460 KQNPNTQ 466
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 32.0 bits (71), Expect = 2.5
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 576 GQDCKYTPMFG-----PEARTLVLRLAQLITQAKHTAKSI--SDQCAESPAGHSFLSWL- 627
G++ + P +G P A+ +VL L+ A A I DQ H+ + +
Sbjct: 344 GKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTIT 403
Query: 628 GFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQ 687
G S++ +GS ++ Q R K L YL+QI L L +F LG
Sbjct: 404 GMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYL----LEKFVAVLGGNI 459
Query: 688 DENGKKQ 694
+N Q
Sbjct: 460 KQNPNTQ 466
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 32.0 bits (71), Expect = 2.5
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 576 GQDCKYTPMFG-----PEARTLVLRLAQLITQAKHTAKSI--SDQCAESPAGHSFLSWL- 627
G++ + P +G P A+ +VL L+ A A I DQ H+ + +
Sbjct: 344 GKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTIT 403
Query: 628 GFSSMDTNGSYTANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQ 687
G S++ +GS ++ Q R K L YL+QI L L +F LG
Sbjct: 404 GMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYL----LEKFVAVLGGNI 459
Query: 688 DENGKKQ 694
+N Q
Sbjct: 460 KQNPNTQ 466
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 31.6 bits (70), Expect = 3.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 235 LPTEGSVPPPLSSSPGGTSPSPPPRTPAIP 264
LP E +PPP PGG PPP P P
Sbjct: 698 LPGEAGMPPPPPPLPGGPGIPPPPPFPGGP 727
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 31.6 bits (70), Expect = 3.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 235 LPTEGSVPPPLSSSPGGTSPSPPPRTPAIP 264
LP E +PPP PGG PPP P P
Sbjct: 707 LPGEAGMPPPPPPLPGGPGIPPPPPFPGGP 736
>gi|55741571 leucine rich repeat and fibronectin type III domain
containing 2 [Homo sapiens]
Length = 789
Score = 31.6 bits (70), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 237 TEGSVPPPLSSSPGGTSPSPPPR 259
T G+ PPP SS+P G P PP+
Sbjct: 579 TNGAQPPPPSSAPAGAPPQGPPK 601
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 236 PTEGSVPPPLSSSPGGTSPSPPPRTP-AIPFASYGLHH 272
P S PPP S P ++PSPPP +P A P + LHH
Sbjct: 11 PPSESPPPP--SPPPPSTPSPPPCSPDARPATPHLLHH 46
Score = 31.2 bits (69), Expect = 4.3
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 239 GSVPPPLSSSPGGTSPSPPPRTPAIP 264
G+ PPP S SP SP PPP TP+ P
Sbjct: 6 GTPPPPPSESPPPPSP-PPPSTPSPP 30
>gi|38505213 YTH domain containing 2 [Homo sapiens]
Length = 1430
Score = 31.6 bits (70), Expect = 3.3
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 236 PTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHE- 294
P+ + P P SS G SPSP P P F + ++L IS Q + + S+E
Sbjct: 1262 PSPCASPSPPSSGKGSKSPSPRPNMPVRYFI---MKSSNLRNLEISQQKGIWSTTPSNER 1318
Query: 295 -----IWRSETLLQVFVEMWLHHY 313
W S + VF H+
Sbjct: 1319 KLNRAFWESSIVYLVFSVQGSGHF 1342
>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
Length = 412
Score = 31.6 bits (70), Expect = 3.3
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 240 SVPPPLSSSPG--------GTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPA 291
S PPP S SPG + +P P +P++P + H + ++S + P+
Sbjct: 60 SSPPPASPSPGFQFGSCDSNSDFAPHPYSPSLPSSPTFFH-----QNYLSLPRPRASSPS 114
Query: 292 SHEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPA-QPSLQ 350
+H ++ S L F + SL + QSP + E LH SS L SP P
Sbjct: 115 NHWLYPSPPLTPSFSPSQPQNSSLP-HSPCQSP-SHPEELH-----SSTLTSPGPSPPSH 167
Query: 351 ALHAYQESF 359
LH+ ++++
Sbjct: 168 RLHSNRQTW 176
>gi|12232415 hypothetical protein LOC64762 [Homo sapiens]
Length = 875
Score = 31.2 bits (69), Expect = 4.3
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 243 PPLSSSPGGTSPSPPPRT------------PAIPFASYGLHH-TSLLKRHISHQTSVNAD 289
PP S+ P TSPS PPRT P + + S GLH+ + + S T V+
Sbjct: 536 PPRSAKPLSTSPSIPPRTVKPARQQTRSPSPTLSYYSSGLHNIVTKTDTNPSESTPVSCY 595
Query: 290 PASHEIWRSETLLQVFVE----------MWLHHYS 314
P + S L F W +HYS
Sbjct: 596 PCNRVKTDSVDLKSPFGSPSAEAVSSRLSWPNHYS 630
>gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens]
Length = 286
Score = 31.2 bits (69), Expect = 4.3
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 231 LSWFLPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASY-GLHHTSLLKRHISHQTSVNAD 289
+SW EG P SS+PG +P PPP P S L+ + + QT + D
Sbjct: 219 ISW--EGEGPEARPASSAPGMQAPGPPPSDPGAQAPSLSSFRPRGLVLQPLLPQTQDSWD 276
Query: 290 PA 291
PA
Sbjct: 277 PA 278
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 31.2 bits (69), Expect = 4.3
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 242 PPPLSSSPGGTSPSPP--------PRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASH 293
PPP +SS G P PP + A P A G T + K+ TSV S
Sbjct: 67 PPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGG---TQMKKKSGFQITSVTPAQISA 123
Query: 294 EIWRSETLLQVFVEMWLHHYSLEMYQKMQSPH----AKLEVLHYRLSVSSALYSPAQPSL 349
I + ++ + E Y + H + E+L LS ++ L P + S
Sbjct: 124 SISSNNSIAE----------DTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSS 173
Query: 350 -QALHAYQESFTP 361
+ L+ +QE+ TP
Sbjct: 174 EETLNNFQEAETP 186
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 30.8 bits (68), Expect = 5.7
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 242 PPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNA--DPASHEIW 296
PPPL P P PP R P IP + L RHI H SV + P E W
Sbjct: 548 PPPLRDPP----PPPPERPPPIP-------PDNRLSRHIHHVESVPSRDPPMPLEAW 593
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,741,878
Number of Sequences: 37866
Number of extensions: 1759710
Number of successful extensions: 8268
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8011
Number of HSP's gapped (non-prelim): 270
length of query: 866
length of database: 18,247,518
effective HSP length: 111
effective length of query: 755
effective length of database: 14,044,392
effective search space: 10603515960
effective search space used: 10603515960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.