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Search of human proteins with 187155251
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187155251 hypothetical protein LOC79078 [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187155251 hypothetical protein LOC79078 [Homo sapiens] 410 e-115
gi|21264616 epidermal growth factor receptor pathway substrate 8... 43 2e-04
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 31 0.61
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 31 0.61
gi|153082755 interferon-induced protein with tetratricopeptide r... 31 0.79
gi|24308219 synaptotagmin IV [Homo sapiens] 30 1.8
gi|87196343 PDZ domain containing 2 [Homo sapiens] 30 1.8
gi|116014339 olfactomedin-like 2A [Homo sapiens] 30 1.8
gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo ... 29 3.0
gi|239752293 PREDICTED: hypothetical protein [Homo sapiens] 29 3.0
gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo ... 29 3.0
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 28 3.9
gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens] 28 3.9
gi|46409434 hypothetical protein LOC388759 [Homo sapiens] 28 5.1
gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens] 28 6.7
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 28 6.7
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 27 8.8
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 27 8.8
gi|112789538 troponin T3, skeletal, fast isoform 2 [Homo sapiens] 27 8.8
gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens] 27 8.8
gi|5803203 troponin T3, skeletal, fast isoform 1 [Homo sapiens] 27 8.8
gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens] 27 8.8
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 27 8.8
gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens] 27 8.8
gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens] 27 8.8
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 27 8.8
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 27 8.8
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 27 8.8
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 27 8.8
>gi|187155251 hypothetical protein LOC79078 [Homo sapiens]
Length = 199
Score = 410 bits (1053), Expect = e-115
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSPYHTHRAGDPLDLVALA 60
MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSPYHTHRAGDPLDLVALA
Sbjct: 1 MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSPYHTHRAGDPLDLVALA 60
Query: 61 EQVQKADEFIRANATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHHVACNIVKKPGNIY 120
EQVQKADEFIRANATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHHVACNIVKKPGNIY
Sbjct: 61 EQVQKADEFIRANATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHHVACNIVKKPGNIY 120
Query: 121 YLYKRESGQQYFSIISPKEWGTSCPHDFLGAYKLQHDLSWTPYEDIEKQDAKISMMDTLL 180
YLYKRESGQQYFSIISPKEWGTSCPHDFLGAYKLQHDLSWTPYEDIEKQDAKISMMDTLL
Sbjct: 121 YLYKRESGQQYFSIISPKEWGTSCPHDFLGAYKLQHDLSWTPYEDIEKQDAKISMMDTLL 180
Query: 181 SQSVALPPCTEPNFQGLTH 199
SQSVALPPCTEPNFQGLTH
Sbjct: 181 SQSVALPPCTEPNFQGLTH 199
>gi|21264616 epidermal growth factor receptor pathway substrate
8-like protein 2 [Homo sapiens]
Length = 715
Score = 43.1 bits (100), Expect = 2e-04
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 34 PTPGGLAL--VSPYHTHRAGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQEQ 91
PTP G AL VS HTHR P A+A+ V+ +F NA N+L+V+ +++ + E
Sbjct: 468 PTPPGDALPPVSSPHTHRGYQPTP--AMAKYVKILYDFTARNA-NELSVLKDEVLEVLED 524
Query: 92 ARKVLEDAHRDANLHHVACNIV--KKPGNIYYLYKRESGQQYFSIISP 137
R+ + R +V CNI+ +P + ++ ++GQ+Y+ SP
Sbjct: 525 GRQWWKLRSRSGQAGYVPCNILGEARPEDAGAPFE-QAGQKYWGPASP 571
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
Length = 585
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 7 PGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALV--SPYHTHRAG 51
PGR EG R+G PP G G+LV P P A + SPY R+G
Sbjct: 26 PGR-EG--RREGLPPGGGTRGSLVPTRPVPPSPAPLGTSPYSWSRSG 69
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
[Homo sapiens]
Length = 851
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 7 PGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALV--SPYHTHRAG 51
PGR EG R+G PP G G+LV P P A + SPY R+G
Sbjct: 26 PGR-EG--RREGLPPGGGTRGSLVPTRPVPPSPAPLGTSPYSWSRSG 69
>gi|153082755 interferon-induced protein with tetratricopeptide
repeats 2 [Homo sapiens]
Length = 472
Score = 30.8 bits (68), Expect = 0.79
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 56 LVALAEQVQKADEFIRANATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHH 107
L ALA+Q + A+ + + + +LT +A+Q+ HL+ ++ + D +HH
Sbjct: 343 LHALADQYEDAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394
>gi|24308219 synaptotagmin IV [Homo sapiens]
Length = 425
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 73 NATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHHVACNIVKKPGNI 119
+ TN LTV+ + +HL + L D + NL+H I KK ++
Sbjct: 299 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 345
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 8 GRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSPYHTHRAGDP 53
G EG QG PPA GG+ P PGG SP AG P
Sbjct: 1450 GSQEG--SAQGHPPAGAGGGSSCRAEPVPGG-QTSSPRRAWAAGAP 1492
>gi|116014339 olfactomedin-like 2A [Homo sapiens]
Length = 652
Score = 29.6 bits (65), Expect = 1.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 59 LAEQVQKADEFIRANATNKLTVIAEQIQHLQEQAR 93
+A Q+ +E I+AN + + V+ + ++HL EQ R
Sbjct: 145 VASQMNTLEESIKANLSRENEVVKDSVRHLSEQLR 179
>gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo
sapiens]
Length = 97
Score = 28.9 bits (63), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 AAPGRTEGVLERQGAPPAAGQGGALVELTPTP 36
+A +T+ +L G PPA QGG + P+P
Sbjct: 26 SANRKTDAILATPGPPPAQPQGGGRLRAPPSP 57
>gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 28.9 bits (63), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 AAPGRTEGVLERQGAPPAAGQGGALVELTPTP 36
+A +T+ +L G PPA QGG + P+P
Sbjct: 26 SANRKTDAILATPGPPPAQPQGGGRLRAPPSP 57
>gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo
sapiens]
Length = 97
Score = 28.9 bits (63), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 AAPGRTEGVLERQGAPPAAGQGGALVELTPTP 36
+A +T+ +L G PPA QGG + P+P
Sbjct: 26 SANRKTDAILATPGPPPAQPQGGGRLRAPPSP 57
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 28.5 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 3 DAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVS 43
D + PG VL+ + PP G G +T GG+A+ S
Sbjct: 880 DVSEPGTLSSVLKSEPKPPGPGAGLGAGTVTTGVGGVAVTS 920
>gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]
Length = 708
Score = 28.5 bits (62), Expect = 3.9
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 117 GNIYYLYKRESGQQYFSIISPKEWGTSCPHDFLGAYKLQ--HDLSW 160
G+ Y LY ++ S S EW S PH F G K Q D SW
Sbjct: 416 GDYYQLYDKDEDS---SECSDGEWSASLPHRFSGTEKDQSSSDESW 458
>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
Length = 237
Score = 28.1 bits (61), Expect = 5.1
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 5 AAPGRTEGVLERQGAPPAAGQGGALVELTPTPG 37
AAP G E QG G G A V TPT G
Sbjct: 157 AAPRTARGAYELQGGASQDGPGQAAVGATPTTG 189
>gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens]
Length = 465
Score = 27.7 bits (60), Expect = 6.7
Identities = 24/58 (41%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 4 AAAPGRTEGVLERQGAPPAAGQGGALVELTPT-----PGGLALVSPYHTHRAGDPLDL 56
AA PG TE G +AG GGA E PT PG A P T D LDL
Sbjct: 255 AAPPGGTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPGEPAPAGPRDT----DALDL 308
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 27.7 bits (60), Expect = 6.7
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 56 LVALAEQVQKADEFIRANATNKLTVIAEQI--QHLQEQARKVLEDA 99
LV + +Q ++ADE +A N + E+I Q L + A+K LE+A
Sbjct: 3046 LVIIVQQKREADEQQKAVTANSEKIAVEEIKCQALADNAQKDLEEA 3091
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 27.3 bits (59), Expect = 8.8
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 40 ALVSPYHTHRAGDPLDLVAL---AEQVQKADEFIRANATNKLTVIAEQIQHLQEQARKV 95
+LV +T + +D+ +L E +++A E + KLT I E+++ +EQ R++
Sbjct: 674 SLVPQNYTENKNEGVDVTSLRGEVESLRRALELMEVQLERKLTDIWEELKSEKEQRRRL 732
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 27.3 bits (59), Expect = 8.8
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 40 ALVSPYHTHRAGDPLDLVAL---AEQVQKADEFIRANATNKLTVIAEQIQHLQEQARKV 95
+LV +T + +D+ +L E +++A E + KLT I E+++ +EQ R++
Sbjct: 563 SLVPQNYTENKNEGVDVTSLRGEVESLRRALELMEVQLERKLTDIWEELKSEKEQRRRL 621
>gi|112789538 troponin T3, skeletal, fast isoform 2 [Homo sapiens]
Length = 256
Score = 27.3 bits (59), Expect = 8.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 40 ALVSPYHTHRAGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQ-----EQARK 94
AL+ + R + +LVAL E+++K RA + + AE+ + Q E+AR+
Sbjct: 71 ALIDSHFEARKKEEEELVALKERIEKR----RAERAEQQRIRAEKERERQNRLAEEKARR 126
Query: 95 VLEDAHRDA 103
EDA R A
Sbjct: 127 EEEDAKRRA 135
>gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens]
Length = 250
Score = 27.3 bits (59), Expect = 8.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 40 ALVSPYHTHRAGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQ-----EQARK 94
AL+ + R + +LVAL E+++K RA + + AE+ + Q E+AR+
Sbjct: 65 ALIDSHFEARKKEEEELVALKERIEKR----RAERAEQQRIRAEKERERQNRLAEEKARR 120
Query: 95 VLEDAHRDA 103
EDA R A
Sbjct: 121 EEEDAKRRA 129
>gi|5803203 troponin T3, skeletal, fast isoform 1 [Homo sapiens]
Length = 258
Score = 27.3 bits (59), Expect = 8.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 40 ALVSPYHTHRAGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQ-----EQARK 94
AL+ + R + +LVAL E+++K RA + + AE+ + Q E+AR+
Sbjct: 73 ALIDSHFEARKKEEEELVALKERIEKR----RAERAEQQRIRAEKERERQNRLAEEKARR 128
Query: 95 VLEDAHRDA 103
EDA R A
Sbjct: 129 EEEDAKRRA 137
>gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens]
Length = 250
Score = 27.3 bits (59), Expect = 8.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 40 ALVSPYHTHRAGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQ-----EQARK 94
AL+ + R + +LVAL E+++K RA + + AE+ + Q E+AR+
Sbjct: 65 ALIDSHFEARKKEEEELVALKERIEKR----RAERAEQQRIRAEKERERQNRLAEEKARR 120
Query: 95 VLEDAHRDA 103
EDA R A
Sbjct: 121 EEEDAKRRA 129
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 27.3 bits (59), Expect = 8.8
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 20 PPAAGQGGALVELTPTPGGLALVSPYHTHRAGDPLDLVALAEQVQK 65
PP GG L TPGG+AL + G P ALA+Q Q+
Sbjct: 3643 PPQGPPGGQAGGLRLTPGGMALPG-----QPGGPFLNTALAQQQQQ 3683
>gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]
Length = 390
Score = 27.3 bits (59), Expect = 8.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 1 MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLA--LVSPYHTHRAGDPLDLVA 58
++ A+APG +LE P A G L L P P GL+ + P+ G P A
Sbjct: 226 VDPASAPGLPFPLLEPFTTPAPAPTGPFLPYLNPAPFGLSPPRLRPFLAAAPGPPASSAA 285
Query: 59 LAEQVQKA 66
+ ++ Q A
Sbjct: 286 VWKKSQGA 293
>gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 8.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 1 MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLA--LVSPYHTHRAGDPLDLVA 58
++ A+APG +LE P A G L L P P GL+ + P+ G P A
Sbjct: 226 VDPASAPGLPFPLLEPFTTPAPAPTGPFLPYLNPAPFGLSPPRLRPFLAAAPGPPASSAA 285
Query: 59 LAEQVQKA 66
+ ++ Q A
Sbjct: 286 VWKKSQGA 293
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 7 PGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALV 42
PG TEG E + P G+ LT PG ALV
Sbjct: 722 PGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALV 757
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 7 PGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALV 42
PG TEG E + P G+ LT PG ALV
Sbjct: 804 PGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALV 839
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 27.3 bits (59), Expect = 8.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 EDAAAPGRTEGVLERQGAPPAAGQGGALVELTP--TPGGLALVSP 44
+ AAA G +G + PP + GA L P PG L L+ P
Sbjct: 85 DGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPGSLPLLDP 129
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 27.3 bits (59), Expect = 8.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 3 DAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSP 44
D+A+ G+TE L + P ++G+ G + T PG L + P
Sbjct: 306 DSASTGKTEPGLLGKLIPGSSGKNGPVSSGTGAPGSLGRLDP 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,534,135
Number of Sequences: 37866
Number of extensions: 383651
Number of successful extensions: 1368
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 32
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.