Search of human proteins with 186972143

Search of human proteins with 186972143

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|186972143 tripeptidyl peptidase II [Homo sapiens]
         (1249 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|186972143 tripeptidyl peptidase II [Homo sapiens]                 2553   0.0  
gi|4506775 membrane-bound transcription factor site-1 protease p...    67   1e-10
gi|83367077 mucin 16 [Homo sapiens]                                    33   1.3  
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi...    33   2.2  
gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 ...    33   2.2  
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]          32   2.9  
gi|118498337 HECT domain containing 1 [Homo sapiens]                   32   2.9  
gi|4506325 protein tyrosine phosphatase, receptor type, R isofor...    32   3.8  
gi|19743917 protein tyrosine phosphatase, receptor type, R isofo...    32   3.8  
gi|83415174 hypothetical protein LOC400818 [Homo sapiens]              32   3.8  
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]             32   5.0  
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]             32   5.0  
gi|92110019 hypothetical protein LOC55672 [Homo sapiens]               32   5.0  
gi|98986457 host cell factor 1 [Homo sapiens]                          31   6.5  
gi|11225260 DNA topoisomerase I [Homo sapiens]                         31   8.4  
gi|31317307 proprotein convertase subtilisin/kexin type 9 prepro...    31   8.4  
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    31   8.4  
gi|31542634 filamin A interacting protein 1 [Homo sapiens]             31   8.4  
gi|118343647 heat shock protein family B (small), member 11 [Hom...    31   8.4  

>gi|186972143 tripeptidyl peptidase II [Homo sapiens]
          Length = 1249

 Score = 2553 bits (6616), Expect = 0.0
 Identities = 1249/1249 (100%), Positives = 1249/1249 (100%)

Query: 1    MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG 60
            MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG
Sbjct: 1    MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG 60

Query: 61   KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF 120
            KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF
Sbjct: 61   KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF 120

Query: 121  YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL 180
            YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL
Sbjct: 121  YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL 180

Query: 181  LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE 240
            LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE
Sbjct: 181  LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE 240

Query: 241  MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR 300
            MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR
Sbjct: 241  MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR 300

Query: 301  LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA 360
            LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA
Sbjct: 301  LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA 360

Query: 361  GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL 420
            GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL
Sbjct: 361  GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL 420

Query: 421  GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR 480
            GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR
Sbjct: 421  GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR 480

Query: 481  ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ 540
            ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ
Sbjct: 481  ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ 540

Query: 541  VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD 600
            VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD
Sbjct: 541  VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD 600

Query: 601  PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR 660
            PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR
Sbjct: 601  PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR 660

Query: 661  RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE 720
            RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE
Sbjct: 661  RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE 720

Query: 721  AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK 780
            AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK
Sbjct: 721  AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK 780

Query: 781  YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC 840
            YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC
Sbjct: 781  YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC 840

Query: 841  PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL 900
            PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL
Sbjct: 841  PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL 900

Query: 901  ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP 960
            ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP
Sbjct: 901  ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP 960

Query: 961  KGAGPGCYLAGSLTLSKTELGKKADVIPVHYYLIPPPTKTKNGSKDKEKDSEKEKDLKEE 1020
            KGAGPGCYLAGSLTLSKTELGKKADVIPVHYYLIPPPTKTKNGSKDKEKDSEKEKDLKEE
Sbjct: 961  KGAGPGCYLAGSLTLSKTELGKKADVIPVHYYLIPPPTKTKNGSKDKEKDSEKEKDLKEE 1020

Query: 1021 FTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERMKRLNEIVDAA 1080
            FTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERMKRLNEIVDAA
Sbjct: 1021 FTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERMKRLNEIVDAA 1080

Query: 1081 NAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALADHLLHTQA 1140
            NAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALADHLLHTQA
Sbjct: 1081 NAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALADHLLHTQA 1140

Query: 1141 QDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVNKMYGRGLK 1200
            QDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVNKMYGRGLK
Sbjct: 1141 QDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVNKMYGRGLK 1200

Query: 1201 FATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYCVF 1249
            FATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYCVF
Sbjct: 1201 FATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYCVF 1249


>gi|4506775 membrane-bound transcription factor site-1 protease
           preproprotein [Homo sapiens]
          Length = 1052

 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 27/254 (10%)

Query: 261 GGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTRLSTMETGTGLIRAMIEVINH 320
           G  HGT VA + A       E  G AP A++   ++     + +   +  + A    I  
Sbjct: 246 GLGHGTFVAGVIASM----RECQGFAPDAELHIFRVFTN--NQVSYTSWFLDAFNYAILK 299

Query: 321 KCDLVNYSYGEATHWPNSGRICEVINEAVWK---HNIIYVSSAGNNGPCLSTVGCPGGTT 377
           K D++N S G      +         + VW+   +N+I VS+ GN+GP   T+  P    
Sbjct: 300 KIDVLNLSIGGPDFMDHP------FVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQM 353

Query: 378 SSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGALGVSISAPGGAIASVPNW 437
             VIGVG     D  +A +S R        TW    P   G +   I   G  +    + 
Sbjct: 354 D-VIGVGGIDFEDN-IARFSSR-----GMTTWEL--PGGYGRMKPDIVTYGAGVRG--SG 402

Query: 438 TLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRRALENTAVKADNIEVFAQ 497
              G + ++GTS++SP   G + L++S ++   +     S+++AL  +A +   + +F Q
Sbjct: 403 VKGGCRALSGTSVASPVVAGAVTLLVSTVQKREL-VNPASMKQALIASARRLPGVNMFEQ 461

Query: 498 GHGIIQVDKAYDYL 511
           GHG + + +AY  L
Sbjct: 462 GHGKLDLLRAYQIL 475


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 395 EYSLREKLPANQYTWSSRGPSADGALGVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPN 454
           E SL   L    Y +SS  P + G   +S SAP  + ASV +  +  T + +G S++SP 
Sbjct: 251 ETSLELILSTTGYPFSSPEPGSAGHSRISTSAPLSSSASVLDNKISETSIFSGQSLTSPL 310

Query: 455 ACG 457
           + G
Sbjct: 311 SPG 313


>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapiens]
          Length = 1002

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 29/175 (16%)

Query: 1020 EFTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERMKRLNEIVDA 1079
            E  E L +LK     K   +    + ++ Y  +L  YVA   QL +EKE +   N+++  
Sbjct: 586  ELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLH--NQLLLQ 643

Query: 1080 ANAVISHIDQTALAVYIA-------MKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALA 1132
               V     Q A    +A        +T  R +AAT +N   + + +L            
Sbjct: 644  TQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSL------------ 691

Query: 1133 DHLLHTQAQDGAISTDAEGKEEEGE------SPLDSLAETFWETTKWTDLFDNKV 1181
              + H    DG    + E +EEE E       P+ S+ E           F++ V
Sbjct: 692  --MAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNSAV 744


>gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 [Homo
            sapiens]
          Length = 1235

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 52/264 (19%), Positives = 103/264 (39%), Gaps = 59/264 (22%)

Query: 1001 KNGSKDKEKDSEKEKDLKEEFTEALRDLKIQWMT----------------KLDSS--DIY 1042
            K   KD EK   K++D  +     L DL   W +                +L++S  D Y
Sbjct: 316  KKSIKDSEKQCSKQEDDIKALETELADLDAAWRSFEKQIEEEILHKKRDIELEASQLDRY 375

Query: 1043 NELKETYPNYLPLYVARLHQLDAEKE------------------RMKRLNEIVDAANAVI 1084
             ELKE     +     +L +L  E++                   +K++ E ++     I
Sbjct: 376  KELKEQVRKKVATMTQQLEKLQWEQKTDEERLAFEKRRHGEVQGNLKQIKEQIEDHKKRI 435

Query: 1085 SHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALAD-----HLLHTQ 1139
              +++        +K            +  +Q+ TLVD + +    +++     +L+ ++
Sbjct: 436  EKLEEYTKTCMDCLK------------EKKQQEETLVDEIEKTKSRMSEFNEELNLIRSE 483

Query: 1140 AQDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVNKMYGRGL 1199
             Q+  I T  EGK ++  + +    +  +  + +  LFD            V K++GR  
Sbjct: 484  LQNAGIDTH-EGKRQQKRAEVLEHLKRLYPDSVFGRLFDLCHPIHKKYQLAVTKVFGR-- 540

Query: 1200 KFATKLVEEKPTKENWKNCIQLMK 1223
             F T +V    +++  K+CI+ +K
Sbjct: 541  -FITAIV--VASEKVAKDCIRFLK 561


>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
          Length = 3628

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 20/155 (12%)

Query: 1011 SEKEKDLKEEFTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERM 1070
            + ++K  K E  + L    ++   +     +  +LK+     L  Y   +H  + E  ++
Sbjct: 52   ANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQA--EELRQYKVLVHSQERELTQL 109

Query: 1071 K-RLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGC 1129
            + +L E  DA+ ++  H+         A+ T   PD +    D+ +Q +        +GC
Sbjct: 110  REKLREGRDASRSLYEHLQ--------ALLTPDEPDKSQ-GQDLQEQLA--------EGC 152

Query: 1130 ALADHLLHTQAQDGAISTDAEGKEEEGESPLDSLA 1164
             LA HL+   + +     D + + EE E  L+S A
Sbjct: 153  RLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSA 187


>gi|118498337 HECT domain containing 1 [Homo sapiens]
          Length = 2610

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 368  STVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGALGVS---- 423
            S+V  PG +++  +G+ +  SPD+      L  K  A+Q   SS   SA   L VS    
Sbjct: 1468 SSVRTPGESSAISMGIVSVSSPDVSSVS-ELTNKEAASQRPLSS---SASNRLSVSSLLA 1523

Query: 424  ISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRRALE 483
              AP  + ASVPN + R T  +        N     A     L  ++ D   +++ R + 
Sbjct: 1524 AGAPMSSSASVPNLSSRETSSLESFVRRVANIARTNATNNMNLSRSSSDNNTNTLGRNVM 1583

Query: 484  NTA 486
            +TA
Sbjct: 1584 STA 1586


>gi|4506325 protein tyrosine phosphatase, receptor type, R isoform 1
           precursor [Homo sapiens]
          Length = 657

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 231 QEYGSFGTAEMLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQ 290
           ++ G +G  E+L  SVN  D+  + ++V   G+H  HV       +P+    +   P  Q
Sbjct: 507 EKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQ 566

Query: 291 ILSIKIGDTRLSTMETG 307
           ++ + + + RL++   G
Sbjct: 567 LM-LDVEEDRLASQGRG 582


>gi|19743917 protein tyrosine phosphatase, receptor type, R isoform
           2 [Homo sapiens]
          Length = 412

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 231 QEYGSFGTAEMLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQ 290
           ++ G +G  E+L  SVN  D+  + ++V   G+H  HV       +P+    +   P  Q
Sbjct: 262 EKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQ 321

Query: 291 ILSIKIGDTRLSTMETG 307
           ++ + + + RL++   G
Sbjct: 322 LM-LDVEEDRLASQGRG 337


>gi|83415174 hypothetical protein LOC400818 [Homo sapiens]
          Length = 942

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 20/155 (12%)

Query: 1011 SEKEKDLKEEFTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERM 1070
            + ++K  K E  + L    ++   +     +  +LK+     L  Y   +H  + E  ++
Sbjct: 52   ANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQA--EELRQYKVLVHSQERELTQL 109

Query: 1071 K-RLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGC 1129
            K +L E  DA+ ++  H+         A+ T   PD +    D+ +Q +        +GC
Sbjct: 110  KEKLREGRDASRSLNEHLQ--------ALLTPDEPDKSQ-GQDLQEQLA--------EGC 152

Query: 1130 ALADHLLHTQAQDGAISTDAEGKEEEGESPLDSLA 1164
             LA HL+   + +     D + + EE E  L+S A
Sbjct: 153  RLAQHLVQKLSPENDEDEDEDVQVEEDEKVLESPA 187


>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
          Length = 1018

 Score = 31.6 bits (70), Expect = 5.0
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 20  ETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDGKPKIVDIIDTTGSGDVNTA 79
           E   A  L  + EY+ R V    L  G +P  P  ++ TDG                  A
Sbjct: 664 EAARAVDLIPWMEYEFRVVATNTLGRG-EPSIPSNRIKTDG-----------------AA 705

Query: 80  TEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGY 118
             V P D  + G  GR  ++  +W   S +YH G   GY
Sbjct: 706 PNVAPSD--VGGGGGRNRELTITWAPLSREYHYGNNFGY 742


>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
          Length = 1007

 Score = 31.6 bits (70), Expect = 5.0
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 20  ETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDGKPKIVDIIDTTGSGDVNTA 79
           E   A  L  + EY+ R V    L  G +P  P  ++ TDG                  A
Sbjct: 653 EAARAVDLIPWMEYEFRVVATNTLGRG-EPSIPSNRIKTDG-----------------AA 694

Query: 80  TEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGY 118
             V P D  + G  GR  ++  +W   S +YH G   GY
Sbjct: 695 PNVAPSD--VGGGGGRNRELTITWAPLSREYHYGNNFGY 731


>gi|92110019 hypothetical protein LOC55672 [Homo sapiens]
          Length = 1214

 Score = 31.6 bits (70), Expect = 5.0
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 20/155 (12%)

Query: 1011 SEKEKDLKEEFTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERM 1070
            + ++K  K E  + L    ++   +     +  +LK+     L  Y   +H  + E  ++
Sbjct: 52   ANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQA--EELRQYKVLVHSQERELTQL 109

Query: 1071 K-RLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGC 1129
            + +L E  DA+ ++  H+         A+ T   PD +    D+ +Q +        +GC
Sbjct: 110  REKLREGRDASRSLNQHLQ--------ALLTPDEPDKSQ-GQDLQEQLA--------EGC 152

Query: 1130 ALADHLLHTQAQDGAISTDAEGKEEEGESPLDSLA 1164
             LA HL+   + +     D + + EE E  L+S A
Sbjct: 153  RLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSA 187


>gi|98986457 host cell factor 1 [Homo sapiens]
          Length = 2035

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 22/95 (23%)

Query: 926  HSFALLGKK-----KSSNLTLPPKYNQPFFVTSLPDDKIPKGAGPGCYLAGSLTLSKTEL 980
            HSF+L+G K       +N +  PK N P ++  L   ++  G+G   +            
Sbjct: 140  HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW------------ 187

Query: 981  GKKADVIPVHYYLIPPPTKTKNGSKDKEKDSEKEK 1015
                  IP+ Y ++PPP ++       EKD++K K
Sbjct: 188  -----DIPITYGVLPPPRESHTAVVYTEKDNKKSK 217


>gi|11225260 DNA topoisomerase I [Homo sapiens]
          Length = 765

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 998  TKTKNGSKDKEKDSEKEKD---LKEEFTEALRDLKIQ 1031
            TK K+GS +K KD  K++D    KEE   A  D KI+
Sbjct: 67   TKHKDGSSEKHKDKHKDRDKEKRKEEKVRASGDAKIK 103


>gi|31317307 proprotein convertase subtilisin/kexin type 9
           preproprotein [Homo sapiens]
          Length = 692

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 35/207 (16%)

Query: 263 AHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTRLSTMETGTGLIRAMIEVINHKC 322
           +HGTH+A + +G         GVA GA + S+++ + +     +GT +    I     K 
Sbjct: 225 SHGTHLAGVVSG------RDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFI----RKS 274

Query: 323 DLVNYSYGEATHWPNSGRICEVINEA---VWKHNIIYVSSAGN--NGPCLSTVGCPGGTT 377
            LV          P +G    V+N A   + +  ++ V++AGN  +  CL +      + 
Sbjct: 275 QLVQPVGPLVVLLPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLYS----PASA 330

Query: 378 SSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGALGVSISAPGGAIASVPNW 437
             VI VGA  + D  V   +L                  +    V + APG  I    + 
Sbjct: 331 PEVITVGATNAQDQPVTLGTL----------------GTNFGRCVDLFAPGEDIIGASSD 374

Query: 438 TLRGTQLMNGTSMSSPNACGGIALILS 464
                   +GTS ++ +  G  A++LS
Sbjct: 375 CSTCFVSQSGTSQAAAHVAGIAAMMLS 401


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)

Query: 371 GCPGGTTSSVIG------VGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGALGVSI 424
           G PGG T++ +G      VG  V          L +++P + Y  S+ GPS    L  + 
Sbjct: 220 GSPGGATAATLGLAPIQVVGQPVMALNTPTSQLLAKQVPVSGYLASAAGPSEPVTLASAG 279

Query: 425 SAPGGA-------IASVPNWTLRGTQLMNGTSMSS 452
            +P GA       +++    TL G  +  G   +S
Sbjct: 280 VSPQGAGLVIQKNLSAAVATTLNGNSVFGGAGAAS 314


>gi|31542634 filamin A interacting protein 1 [Homo sapiens]
          Length = 1213

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 117 GYDFYPKALKE--RIQKERKEKIWDPVHRVALAEACRKQEEFDVAN---------NGSSQ 165
           G D Y K + E  R+++++KE     + ++ LAE C ++  +++ N         N S  
Sbjct: 140 GEDVYEKPISELDRLEEKQKETYRRMLEQLLLAEKCHRRTVYELENEKHKHTDYMNKSDD 199

Query: 166 ANKLIKEELQSQVELLNSFEKKY 188
              L+++E +   +LL   EK Y
Sbjct: 200 FTNLLEQERERLKKLLEQ-EKAY 221


>gi|118343647 heat shock protein family B (small), member 11 [Homo
            sapiens]
          Length = 144

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 1133 DHLLHTQAQDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVN 1192
            D  L ++  +  ++T ++ K    E+ +D   ETFW T   T +F  + +   +KH  + 
Sbjct: 5    DLCLSSEGSEVILATSSDEKHPP-ENIIDGNPETFWTT---TGMFPQEFIICFHKHVRIE 60

Query: 1193 KMYGRGLKFATKLVEEKPTKE 1213
            ++  +     T  +E+  +KE
Sbjct: 61   RLVIQSYFVQTLKIEKSTSKE 81


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,346,009
Number of Sequences: 37866
Number of extensions: 2431310
Number of successful extensions: 7294
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7260
Number of HSP's gapped (non-prelim): 46
length of query: 1249
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1135
effective length of database: 13,930,794
effective search space: 15811451190
effective search space used: 15811451190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.