Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 18379334

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
         (305 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...   603   e-173
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...   603   e-173
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...   591   e-169
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...   591   e-169
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...   589   e-168
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...   589   e-168
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...   589   e-168
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...   589   e-168
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         90   2e-18
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     84   2e-16
gi|40807452 peroxisome proliferator-activated receptor gamma, co...    83   3e-16
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     82   8e-16
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]       81   1e-15
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         78   9e-15
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        76   3e-14
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           76   4e-14
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]           76   4e-14
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     75   6e-14
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         74   1e-13
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           74   1e-13
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           74   1e-13
gi|9558733 transformer-2 alpha [Homo sapiens]                          74   2e-13
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]      72   5e-13
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         71   1e-12
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     70   2e-12
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          69   4e-12
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor...    69   5e-12
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    69   5e-12
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    69   7e-12
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s...    69   7e-12

>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score =  603 bits (1555), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSSR
Sbjct: 301 SNSSR 305


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score =  603 bits (1555), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSSR
Sbjct: 301 SNSSR 305


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score =  591 bits (1523), Expect = e-169
 Identities = 300/305 (98%), Positives = 301/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSS+
Sbjct: 301 SNSSQ 305


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score =  591 bits (1523), Expect = e-169
 Identities = 300/305 (98%), Positives = 301/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSS+
Sbjct: 301 SNSSQ 305


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score =  589 bits (1518), Expect = e-168
 Identities = 299/305 (98%), Positives = 300/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSS+
Sbjct: 301 SNSSQ 305


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score =  589 bits (1518), Expect = e-168
 Identities = 299/305 (98%), Positives = 300/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSS+
Sbjct: 301 SNSSQ 305


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score =  589 bits (1518), Expect = e-168
 Identities = 299/305 (98%), Positives = 300/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSS+
Sbjct: 301 SNSSQ 305


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score =  589 bits (1518), Expect = e-168
 Identities = 299/305 (98%), Positives = 300/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSR 305
           SNSS+
Sbjct: 301 SNSSQ 305


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 61/121 (50%), Positives = 73/121 (60%), Gaps = 9/121 (7%)

Query: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
           S  K+K RS+ +G         R R+KT K RS SS SSS+ S S+S+SS  SS+S  SS
Sbjct: 552 SKSKTKTRSRSRG---------RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSS 602

Query: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
           S SSSSS+SS SGSSS   SSS+SSSS S S SR R  NR R   +S   KR +     R
Sbjct: 603 SRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLER 662

Query: 155 S 155
           S
Sbjct: 663 S 663



 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 7/114 (6%)

Query: 49  TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
           T     K + + ++R R  A + +S +RSRSSS+SSS SS+ST SSSGSSSSS SS S S
Sbjct: 547 TVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSS-SSSSTSSSSGSSSSSGSSSSRS 605

Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEK-----ERKRRSPS 157
           SS+S SSS+S SS   S S     +  RSRS+ +   RD K     +RKRR  S
Sbjct: 606 SSSS-SSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS 658



 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 27  SPTKRKDRSDEKSKDRSK-DKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSS 85
           S +K K RS  + + R+K  K  ++ SS        T     +SS S S+ SRSSS+SSS
Sbjct: 552 SKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSS 611

Query: 86  GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPK 145
                  S+SGSSS  +SS + SSS SRS S           RR  D +RR  S      
Sbjct: 612 -------STSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS-----G 659

Query: 146 RDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
            +   +  +  S + TK    + +R+  K  I E
Sbjct: 660 LERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISE 693



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 32/157 (20%)

Query: 27  SPTKRKDRSDEKSKDR-SKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSS 85
           S TK + RS  +++++ SK +  +  SS        +    S+SSGSSS+RS SSS+SS+
Sbjct: 554 SKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 613

Query: 86  GSSTSTGSSSGSSSSSASSRSGS----------------------SSTSRSSSSSSSSGS 123
             S+S  SSS S+SSS+ SRS S                      S   RS  SS    S
Sbjct: 614 SGSSSRDSSS-STSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSS 672

Query: 124 PSPSRRRHDNRRRSRSKS--------KPPKRDEKERK 152
                 +  N R  R +S        K   R E++RK
Sbjct: 673 RDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRK 709



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 45/137 (32%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 4   SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
           S     S  G   ++  SS+R+ S +     S   S+D S    ++ ES  + RGR   R
Sbjct: 584 SSSSTSSSSGSSSSSGSSSSRSSSSSS-SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNR 642

Query: 64  KRRSASSGSSSTR-----SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
            R+   S     R      RS  +S  GSS  T  S   +S S   RS S S SRS   S
Sbjct: 643 DRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISES-SRSGKRS 701

Query: 119 SSSGSPSPSRRRHDNRR 135
           S S     S R+ D RR
Sbjct: 702 SRSERDRKSDRK-DKRR 717



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGAT--KESSEKDRGRDKTRKRRSASSGS 72
           +    KS +R+ S +     S   S   S   G++  + SS        +  R S+SS S
Sbjct: 567 RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTS 626

Query: 73  SSTRSRSSSTSSSGS---------STSTGSSSGSSSSSASSRSGSSSTSRSS--SSSSSS 121
           SS+ SRS S     +               +SG   S  SS+ GSS  ++ S   +S S 
Sbjct: 627 SSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD 686

Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKR 153
              S S      +R SRS+ +  K D K+++R
Sbjct: 687 RKRSISESSRSGKRSSRSE-RDRKSDRKDKRR 717


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 8/145 (5%)

Query: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
           T + +  LT   + D +  +F  YG++  + +P +R +   S+G+A+V F +  +AE A+
Sbjct: 14  TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAM 72

Query: 221 KHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 280
             MDG  +DG+E+     +A + RPP    S   R  PPP   R       RRSRSPRRR
Sbjct: 73  DAMDGAVLDGRELRVQ--MARYGRPPDSHHS---RRGPPPR--RYGGGGYGRRSRSPRRR 125

Query: 281 SPVRRRSRSPGRRRHRSRSSSNSSR 305
              R RSRS  R R RSR S + SR
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSR 150



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 52/129 (40%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSS 81
           S R P P +R        + RS  +     S  + R R ++R R S S   S TRSRS S
Sbjct: 101 SRRGPPP-RRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159

Query: 82  TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141
           TS S S+  +      S SS+ SRS S S SRS S S     P P  +R +++ RSRSKS
Sbjct: 160 TSKSRSARRS-----KSKSSSVSRSRSRSRSRSRSRS-----PPPVSKR-ESKSRSRSKS 208

Query: 142 KPPKRDEKE 150
            PPK  E+E
Sbjct: 209 -PPKSPEEE 216



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 46/105 (43%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 57  RGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116
           R R   R+RRS S   S +RSRS S  S   S S             SRS S+S SRS+ 
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR----------TRSRSRSTSKSRSAR 167

Query: 117 SSSSSGSPSPSRRRHDNRRRSRSKSKPP--KRDEKERKRRSPSPK 159
            S S  S S SR R  +R RSRS+S PP  KR+ K R R    PK
Sbjct: 168 RSKSKSS-SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPK 211



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 24  RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR---------RSASSGSSS 74
           R+ SP +R+ RS  +S+ RS+ +  ++ S  K R R ++R R         RS S  SS 
Sbjct: 118 RSRSPRRRR-RSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSV 176

Query: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
           +RSRS S S S S +    S   S S + S+S   S     + SS
Sbjct: 177 SRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS 221



 Score = 37.0 bits (84), Expect = 0.022
 Identities = 27/66 (40%), Positives = 32/66 (48%)

Query: 92  GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
           G    S S     RS S S SRS S S S  S S SR R  +R RS SKS+  +R + + 
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKS 173

Query: 152 KRRSPS 157
              S S
Sbjct: 174 SSVSRS 179



 Score = 37.0 bits (84), Expect = 0.022
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
           + +S      +  +S TR+ S +  K RS  +SK +S    +   S  + R R ++R   
Sbjct: 137 RSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKS---SSVSRSRSRSRSRSRSRSPP 193

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSS 94
             S   S +RSRS S   S       SS
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEEEGAVSS 221



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 105 RSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
           RS S    R S S S S S S SR R+     SRSKS+   R       +S S + +K  
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRSRY-----SRSKSRSRTRSRSRSTSKSRSARRSKSK 172

Query: 165 IGRLTRN 171
              ++R+
Sbjct: 173 SSSVSRS 179


>gi|40807452 peroxisome proliferator-activated receptor gamma,
            coactivator-related 1 [Homo sapiens]
          Length = 1664

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 32/222 (14%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSS 81
            +TR P     K RS    +   +    + +  +  RGR+     RS SSGS+ T   SSS
Sbjct: 1388 NTRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNS----RSVSSGSNRTSEASSS 1443

Query: 82   TSSSGSST--------------------STGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
            +SSS SS+                    S+G S   SSSS+SS S SSS+S SSSS S S
Sbjct: 1444 SSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRS 1503

Query: 122  GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
             SPSP RR    RR S  +S    + ++  ++     +   V IG++   +T+  + + F
Sbjct: 1504 RSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELKQRF 1563

Query: 182  STYGKIK--MIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
            S +G+I+   I   V+         Y +V +   +EA  A++
Sbjct: 1564 SVFGEIEECTIHFRVQ------GDNYGFVTYRYAEEAFAAIE 1599



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 14/68 (20%)

Query: 251  SPPRRMLPPPPMWRRSPPRMRRRSR--------------SPRRRSPVRRRSRSPGRRRHR 296
            S  R + PP   WRRS      RSR              S    S  R RSRSP  RR  
Sbjct: 1453 SRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRS 1512

Query: 297  SRSSSNSS 304
             R    SS
Sbjct: 1513 DRRRRYSS 1520



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/33 (51%), Positives = 17/33 (51%)

Query: 266  SPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSR 298
            S  R R RS SPRRRS  RRR  S     H  R
Sbjct: 1497 SSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQR 1529


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69

Query: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129

Query: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 232
           T+  + E+FS YG I  + + V       S+G+A+V FEN D+A++A +  +G ++DG+ 
Sbjct: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188

Query: 233 ITATAVLAPWPRPP 246
           I     +   P  P
Sbjct: 189 IRVDFSITKRPHTP 202



 Score = 34.7 bits (78), Expect = 0.11
 Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 249 RFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP----VRRRSRSPGRRRHRSRSSSNSS 304
           R +P R          RS  R R  SRS  RRS      R RSRS   RR RSRS S   
Sbjct: 31  RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDY 90

Query: 305 R 305
           R
Sbjct: 91  R 91


>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
          Length = 1007

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 92/307 (29%), Positives = 116/307 (37%), Gaps = 52/307 (16%)

Query: 2   DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG--- 58
           D +   K   L  +   K    R+P+  K K     KSKDR K      ES  +DRG   
Sbjct: 234 DQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSP-IINESRSRDRGKKS 292

Query: 59  ------RDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
                 R K++ RRS S    S RS +        S S  +SSG  + S S R G S   
Sbjct: 293 RSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKR 352

Query: 113 RSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
           RS        SP P     D  RRSRS   P   D + ++ +SPS               
Sbjct: 353 RSL-------SPKP----RDKSRRSRS---PLLNDRRSKQSKSPS--------------- 383

Query: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 232
                    S   + K   +  +R  P   +  +       D   +  +  D   I+   
Sbjct: 384 ------RTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDILSRRERSKDASPINRWS 437

Query: 233 ITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGR 292
            T     +P  R   R  SP RR   P    RR     RRR R  R RS +RRRSRS G 
Sbjct: 438 PTRRRSRSPIRR---RSRSPLRRSRSP----RRRSRSPRRRDRGRRSRSRLRRRSRSRGG 490

Query: 293 RRHRSRS 299
           RR RSRS
Sbjct: 491 RRRRSRS 497



 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 90/322 (27%), Positives = 128/322 (39%), Gaps = 50/322 (15%)

Query: 18  NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGA-------TKESSEKDRGRDKTRKRRSAS- 69
           + K +T+  S ++ K+R+  +S D+ K KG        T  S  K+R + K+  +RS S 
Sbjct: 175 DNKITTKKRSKSRSKERTRHRS-DKKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQ 233

Query: 70  -----SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
                S S + R RS        S +         S +  R  S   + S S      S 
Sbjct: 234 DQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSR 293

Query: 125 SPSRRRHDNR-RRSRSKSKPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFS 182
           SP   R  ++ RRSRSK +  KR E +++++ P   P+K    G+  R+ ++        
Sbjct: 294 SPVDLRGKSKDRRSRSKERKSKRSETDKEKK-PIKSPSKDASSGKENRSPSRRPGRSPKR 352

Query: 183 TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 242
                K  D       P L+           D   K  K        G+   + ++    
Sbjct: 353 RSLSPKPRDKSRRSRSPLLN-----------DRRSKQSKSPSRTLSPGRRAKSRSLERKR 401

Query: 243 PRPPPRRFSPPR------------RMLPPPPMWRRSPPRMRRRSRSP---RRRSPVRRRS 287
             P  RR S PR            R     P+ R SP R  RRSRSP   R RSP+RR S
Sbjct: 402 REPERRRLSSPRTRPRDDILSRRERSKDASPINRWSPTR--RRSRSPIRRRSRSPLRR-S 458

Query: 288 RSPGRR----RHRSRSSSNSSR 305
           RSP RR    R R R   + SR
Sbjct: 459 RSPRRRSRSPRRRDRGRRSRSR 480



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 73/281 (25%), Positives = 108/281 (38%), Gaps = 37/281 (13%)

Query: 46  KGATKESSEKDRGRDKTRKRRSASSGSSSTRSR---------SSSTSSSGSSTSTGSSSG 96
           +G    S E+    +K R    +S+ SSST+ +         +   S S S   T   S 
Sbjct: 138 QGYESGSEEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSD 197

Query: 97  SSSSSASSRSGSSSTSRSSSSS-SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
              S          T+RS S     S SPS   +  D  R+S+S +   +  EK  K RS
Sbjct: 198 KKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARS 257

Query: 156 PSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFEN--- 212
           P+    K+     +++  K  I+    +  + K    PV+       +     E ++   
Sbjct: 258 PTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRS 317

Query: 213 -PDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRR--FSPPRRMLPPPPMWRRSPPR 269
             D+ +K +K        G+E           R P RR   SP RR L P P  +     
Sbjct: 318 ETDKEKKPIKSPSKDASSGKE----------NRSPSRRPGRSPKRRSLSPKPRDK----- 362

Query: 270 MRRRSRSPRRRSPVRRRSRSPGR-----RRHRSRSSSNSSR 305
             RRSRSP       ++S+SP R     RR +SRS     R
Sbjct: 363 -SRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRR 402



 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 42/132 (31%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 15  KENNKKSSTRAPSPTKR-KDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSS 73
           +    KS +R  SP +R K RS E+ +   ++    + SS + R RD    RR  S  +S
Sbjct: 375 RSKQSKSPSRTLSPGRRAKSRSLERKR---REPERRRLSSPRTRPRDDILSRRERSKDAS 431

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
                S +   S S     S S    S +  R   S   R     S S     SR R   
Sbjct: 432 PINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGR 491

Query: 134 RRRSRSKSKPPK 145
           RRRSRSK K  K
Sbjct: 492 RRRSRSKVKEDK 503



 Score = 35.8 bits (81), Expect = 0.048
 Identities = 40/173 (23%), Positives = 61/173 (35%), Gaps = 4/173 (2%)

Query: 8   KKSLLGVKENNKKSST-RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
           +  +L  +E +K +S     SPT+R+ RS  + + RS  + +          R + R RR
Sbjct: 417 RDDILSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRR 476

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
           S S     +RSR      S S        GS S        SSS     +          
Sbjct: 477 SRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSS---DDNLEDFDVEEED 533

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
                + RR  R       +   E    S   +P+       TR+ + D I+E
Sbjct: 534 EEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILE 586


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRS 77
           K+++T  P   +  +  D   + +S K K     S  + R R KT    +++S SS + S
Sbjct: 500 KEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSS 559

Query: 78  RSSSTSSSGSSTSTG-SSSGSSSSSASSRSGSSSTSRSSSSS-SSSGSPSPSRRRHDNRR 135
           RSSS S SGSS S   SSS SS SS SSR  S S SRS S S SSS SPSP+   H    
Sbjct: 560 RSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSI 619

Query: 136 RSRSKSKPP--KRDEKERKRRSPSPKP 160
           R++ +  PP  K  EK  K+ +P P P
Sbjct: 620 RTKGEPAPPPGKAGEKSVKKPAPPPAP 646



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 6   VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
           VKK +         K++   P PTK  D  + + K+R            +   R +T   
Sbjct: 637 VKKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPA----------RTPPRRRTLSG 686

Query: 66  RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS--SSSSSGS 123
             + SGSS + S S S S S SS S+ SS+ SSSSSA S       +  +S  SS+SS S
Sbjct: 687 SGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADLASPVSSASSRS 746

Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
           P+P++      R+ + KSK     ++E+++R  S +P K
Sbjct: 747 PAPAQ-----TRKEKGKSKKEDGVKEEKRKRDSSTQPPK 780



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 32/155 (20%)

Query: 31  RKDRSDEKSKDRSKDKGATKESSEKDRGRD-KTRKRRSASSGSSSTR------------- 76
           R+ R  ++ K+R K+KG  K  S +   R  +  K+ +A++G    R             
Sbjct: 465 RQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKS 524

Query: 77  -------SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS---SSTSRSSSSSSSSGSPSP 126
                  S S S +     TS  S+S S+SS +SSRS S   S +SRS S SSS  S S 
Sbjct: 525 PKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSS 584

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT 161
              RH +   SRS+S+            SPSP PT
Sbjct: 585 RSSRHSSFSGSRSRSR--------SFSSSPSPSPT 611



 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 18/303 (5%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTR 76
           N ++         ++++R  E+ +DR +++   +   E++  RDK R+RR         R
Sbjct: 400 NYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEE--WERER 457

Query: 77  SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
           ++                          RS    + ++      + +  P  +R D  + 
Sbjct: 458 AKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKD 517

Query: 137 SRSKSKPPKR--------DEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
              +SK PK+            R+R++ +   +  +  R +   +         +  +  
Sbjct: 518 PWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSS 577

Query: 189 MIDMPVERMHPHL----SKGYAYVEFENPDEAEKALKHMDGGQIDGQEI----TATAVLA 240
                  R   H     S+  +     +P  +     H    +  G+       A     
Sbjct: 578 SYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSV 637

Query: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
             P PPP      +   P P   +   PR  RR   P R  P RR     G     S S 
Sbjct: 638 KKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPARTPPRRRTLSGSGSGSGSSYSG 697

Query: 301 SNS 303
           S+S
Sbjct: 698 SSS 700



 Score = 38.1 bits (87), Expect = 0.010
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 21  SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80
           +S+R+P+P + +     K K +SK +   KE   K     +  K     +G  S++  S+
Sbjct: 742 ASSRSPAPAQTR-----KEKGKSKKEDGVKEEKRKRDSSTQPPKSAKPPAGGKSSQQPST 796

Query: 81  STSSSGSSTSTGSS-----------SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
              +       G+            + ++   +  R   S   R S   +   + SP R 
Sbjct: 797 PQQAPPGQPQQGTFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPPAKRPNTSPDRG 856

Query: 130 RHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
             D +   R  S  P+R   +  +   +P   K  +   +++ +K
Sbjct: 857 SRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSK 901



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 53/304 (17%), Positives = 99/304 (32%), Gaps = 34/304 (11%)

Query: 29  TKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSS 88
           T+ +   + + ++R +++   +   E++R RD+ R+RR           R          
Sbjct: 393 TETEPYHNYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEE 452

Query: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP--PKR 146
                +                            SP P  R+ +  ++  + + P   + 
Sbjct: 453 WERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRA 512

Query: 147 DE-KERKRRSPSPK-----PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
           DE K+  RRS SPK            R  R  +        S+    +            
Sbjct: 513 DEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRS 572

Query: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPP 260
            S+  +Y  +     + ++ +H        +  + ++  +P P P P R S   +  P P
Sbjct: 573 RSRSSSYSSY-----SSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAP 627

Query: 261 PMWRR------------SPPRMRR---------RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
           P  +             +PP+  +         +   PR      R +R+P RRR  S S
Sbjct: 628 PPGKAGEKSVKKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPARTPPRRRTLSGS 687

Query: 300 SSNS 303
            S S
Sbjct: 688 GSGS 691



 Score = 32.3 bits (72), Expect = 0.54
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 32  KDRSDEKSKDRSKDKGATKESSEKDRG-RDKTRKRRSASSGSSSTRSRSSSTSSSGSSTS 90
           + R +   KDR     A + ++  DRG RD+    R  S      R ++S   ++ +   
Sbjct: 830 RKRYEPSDKDRQSPPPAKRPNTSPDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRK 889

Query: 91  TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
              S  S SSS  + S     S   ++S+ SG  S   RR +
Sbjct: 890 RQLSPQSKSSSKVT-SVPGKASDPGAASTKSGKASTLSRREE 930



 Score = 32.0 bits (71), Expect = 0.70
 Identities = 47/206 (22%), Positives = 71/206 (34%), Gaps = 55/206 (26%)

Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
           H+ R R R + +  ++ E+ER+R     +  +    +  R   ++H              
Sbjct: 399 HNYRERERERERENRQRERERERERDRERERR----QREREREREH-------------- 440

Query: 191 DMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRF 250
               ER      +   + E E     EK  +H D  +   +E          P+PP R+ 
Sbjct: 441 ----ERDKERQRRKEEW-ERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQA 495

Query: 251 SPPRRMLPPP-----------PMWRRS------------PPRMRRRSRSPRRRSPVRRRS 287
            PP++                  WRRS            P R RRR ++    +     S
Sbjct: 496 EPPKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSS 555

Query: 288 RS---------PGRRRHRSRSSSNSS 304
           RS          G  R RSRSSS SS
Sbjct: 556 RSSSRSSSYSGSGSSRSRSRSSSYSS 581


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 55/159 (34%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 10   SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR---- 65
            +L   KE    SS+ + S +     S   S   S    +  E S      +   KR    
Sbjct: 2523 ALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSP 2582

Query: 66   --------RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
                    R       +   R   +SSS SS+S+ SSS SSSSS+SS S SSS+S SSSS
Sbjct: 2583 TPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642

Query: 118  SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSP 156
            SSSS SPSP++       +  S  KPP  + + R  R P
Sbjct: 2643 SSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP 2681



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 12/124 (9%)

Query: 48   ATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSG 107
            A KE+  + R  + T  +R   S SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S 
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SS 2643

Query: 108  SSSTSRSSSSSSSSGSPSPS--RRRHDNRRRSRSKSKP--PKRDEK-------ERKRRSP 156
            SSS+S S +       P P+  ++     RRSRS  KP    RD +       ER+R SP
Sbjct: 2644 SSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP 2703

Query: 157  SPKP 160
             P P
Sbjct: 2704 QPSP 2707



 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 82/306 (26%), Positives = 119/306 (38%), Gaps = 36/306 (11%)

Query: 8    KKSLLGVKENNKKSSTRAPSPTKRKDRS-DEKSKDRS--KDKGATKESSEKD-RGRDKTR 63
            ++S  G  +      + +P      D S D K+K R+  + +  +  S E D + R   R
Sbjct: 1535 QRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPR 1594

Query: 64   KRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS-SASSRSGSSSTSRSSS---SSS 119
            + RS SS     + R++  + SGS +S    + +  +    SRSGSSS  R  S   SSS
Sbjct: 1595 RSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSS 1654

Query: 120  SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
            +  SP    +    RR SRS  +P  +     +RRS    P      RL+R         
Sbjct: 1655 TESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRR------SR 1708

Query: 180  IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 239
              S+  + +    P  R  P +S         +P+ AEK+                T+  
Sbjct: 1709 SASSSPETRSRTPPRHRRSPSVS---------SPEPAEKSRSSRRRRSASSPRTKTTSRR 1759

Query: 240  APWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRS 299
               P P PR               +RS  R RR      RR      S+S  RRR RSRS
Sbjct: 1760 GRSPSPKPRGL-------------QRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRS 1806

Query: 300  SSNSSR 305
             S  +R
Sbjct: 1807 RSRVTR 1812



 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 89/306 (29%), Positives = 124/306 (40%), Gaps = 34/306 (11%)

Query: 19  KKSSTRAPSPTKRKDRSDEK-------SKDRSKDKGATKESSEKDRGRDKTRK-RRSASS 70
           ++  +R+ +P +R  RS  +       S+ R+  +G ++  S   RGR  +R  +R   S
Sbjct: 665 RRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRS 724

Query: 71  GSSSTRSRSSSTSSSGS-STSTGSSSGSSSSSASSRSGSSSTSRSSSSSS-----SSGSP 124
           GSSS R   S TS   S S S+     S  SS  SRS SS  S++ S  S     S  SP
Sbjct: 725 GSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSP 784

Query: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRR-----SPSPKPTKVHIGRLTRNVTKDHIME 179
            P ++     RRSRS S  PK   +   RR     SP PK       R + + +  H   
Sbjct: 785 CPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKV 844

Query: 180 IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA---LKHMDGGQIDGQEITAT 236
              T  +   I  P         +  +  E  +PD   K+    +H   G    +  ++T
Sbjct: 845 KSGTPPRQGSITSPQANEQSVTPQRRSCFE-SSPDPELKSRTPSRHSCSGSSPPRVKSST 903

Query: 237 AVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHR 296
                    PPR+ SP R   P P +     PR R  S S    SP R  SR+  RR   
Sbjct: 904 ---------PPRQ-SPSRSSSPQPKVKAIISPRQRSHSGS-SSPSPSRVTSRTTPRRSRS 952

Query: 297 SRSSSN 302
               SN
Sbjct: 953 VSPCSN 958



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 87/316 (27%), Positives = 130/316 (41%), Gaps = 46/316 (14%)

Query: 15  KENNKKSSTRAPSPTK-RKDRSDE-KSKDRSKDKGATKESSEKDRGRDKTRKRR-SASSG 71
           K+++KK   R+ S +K RK RS   KSK +SKDK   +  S     + +   R  SA S 
Sbjct: 210 KKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSA 269

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSG----------SSSTSRSSSSSSSS 121
           SSS  SRS S S++ + T T + +G S S AS R G          ++ST R SS  +++
Sbjct: 270 SSSDTSRSRSRSAA-AKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETAT 328

Query: 122 GSPSPSRRRHDNRRRSRSKSKP---PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
             PS      D  ++ +S ++P   P+R     +  +P+P   + H G      T     
Sbjct: 329 KQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQ 388

Query: 179 EIFSTYGKIKMI-DMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 237
           E  +   +     D    +    L +  +        +  K  +H            +++
Sbjct: 389 EPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRH-----------ASSS 437

Query: 238 VLAPWPRPPPRRFSPPRRMLPPPPMWRRS-------------PPRMRRRSRSPRRRSPVR 284
             +P P P P      R +   P    RS             P R   RSRSP      R
Sbjct: 438 PESPKPAPAP---GSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGR 494

Query: 285 RRSRSPGRRRH-RSRS 299
            RSR+P +R H RSRS
Sbjct: 495 SRSRTPTKRGHSRSRS 510



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 85/322 (26%), Positives = 126/322 (39%), Gaps = 44/322 (13%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR- 65
           KKK      E++     R  S  K+K RS+ +SK R K +  T +S  K +  DK RKR 
Sbjct: 192 KKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKR-KHRSPTPKSKRKSK--DKKRKRS 248

Query: 66  ---------------RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSS 110
                           SA S SSS  SRS S S++ + T T + +G S S AS R G   
Sbjct: 249 RSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAA-AKTHTTALAGRSPSPASGRRGEGD 307

Query: 111 TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170
              S   ++S+  PS         ++  S  +   +D+KE+    PSP P +   G    
Sbjct: 308 APFSEPGTTSTQRPSSPETA---TKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPP 364

Query: 171 NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 230
             T         +   +    +  E ++P             P EA            + 
Sbjct: 365 APTPLLAERHGGSPQPLATTPLSQEPVNP-------------PSEASPTRDRSPPKSPEK 411

Query: 231 QEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSP--RRRSPVRRR-- 286
              ++++  +P P P P + S      P  P    +P   R  S SP  + RS  R +  
Sbjct: 412 LPQSSSSESSP-PSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRD 470

Query: 287 ---SRSPGRRRHRSRSSSNSSR 305
              S +P RR  RSRS + + R
Sbjct: 471 KSHSHTPSRRMGRSRSPATAKR 492



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 83/300 (27%), Positives = 119/300 (39%), Gaps = 27/300 (9%)

Query: 24   RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTS 83
            R+PS +  +     +S  R +   + +  +   RGR  + K R      S +RSR   T 
Sbjct: 1726 RSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQR--SRSRSRREKTR 1783

Query: 84   SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS---SSSGSPSPSRRRHDNRRRSRSK 140
            ++     +GSS  +S     SRS S  T R    S   S S +   S R    RRR RS+
Sbjct: 1784 TTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSR 1843

Query: 141  SKPPKRDEKERKRRSPSP-KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHP 199
            + P  R ++ R R SP+P K ++      T   ++     I     + +   +   R   
Sbjct: 1844 TPPTSR-KRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRS 1902

Query: 200  HLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPP----RR 255
              S         +   A    +     +        +    P  R   R  +PP    R 
Sbjct: 1903 RTS----VTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRS 1958

Query: 256  MLPPPPMWR-----RSPPRMRRRSRSPRRRSPV-RRRSRS----PGRRRHRSRSSSNSSR 305
                PP+ R     R+ P  RRRSRS  R SPV RRRSRS      RRR RSR+S  + R
Sbjct: 1959 RSRTPPVTRRRSRSRTSPITRRRSRS--RTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR 2016



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 71/306 (23%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT-------------RKR 65
           ++  +R+ +P +R+ RS   ++ RS+    ++  + + R R +T             R+ 
Sbjct: 580 RRGRSRSRTPARRRSRSRTPTRRRSR----SRTPARRGRSRSRTPARRRSRTRSPVRRRS 635

Query: 66  RSASSGSSSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
           RS S    S RSRS + +  G S S T +  G S S   +R    S SR+ +    S S 
Sbjct: 636 RSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSR 695

Query: 125 SPSRRRHDNR---RRSRSKSKPPKR-----DEKERKRRSPSPKPTKVHIGRLTRNVTKDH 176
           +P R R  +R   RR RS S+ P+R        ERK +S + +       R +R+ +   
Sbjct: 696 TPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQ-------RRSRSNSSPE 748

Query: 177 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
           + +   +  + + +  P  +    LS                  + + G           
Sbjct: 749 MKKSRISSRRSRSLSSPRSKAKSRLS----------------LRRSLSGSS--------- 783

Query: 237 AVLAPWPRPPPRRFSPPRRM---LPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRR 293
                 P P  +  +PPRR       P    R+PPR  R S SP    P +++S++P R+
Sbjct: 784 ------PCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSP----PPKQKSKTPSRQ 833

Query: 294 RHRSRS 299
            H S S
Sbjct: 834 SHSSSS 839



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 25/303 (8%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGA----TKESSEKDRGRDKTRKRRSASSGSSSTRS 77
            S  + S ++R+ RS  +S+   + +G     ++  + ++  R  +R+RR  S    ++R 
Sbjct: 1791 SGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 1850

Query: 78   RSSSTSS--------SGSSTSTGSSSGSSSSSASSRSGSSSTS-----RSSSSSSSSGSP 124
            RS S +S        S +S +T   S S +   S R   S TS     RS S +S +   
Sbjct: 1851 RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRR 1910

Query: 125  SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTY 184
            S SR    +RRRSRS++ PP    + R R   + + ++     +TR  ++     +  T 
Sbjct: 1911 SRSRASPVSRRRSRSRT-PPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPV--TR 1967

Query: 185  GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR 244
             + +    P+ R     S+        +        +     +     +T     +  P 
Sbjct: 1968 RRSRSRTSPITRRRSR-SRTSPVTRRRSRSRTSPVTRRRSRSRT--SPVTRRRSRSRTPP 2024

Query: 245  PPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRS--PRRRSPVRRRSRSPGRRRHRSRSSSN 302
               RR      +LP      RSP  +RRRSRS  PR     R  +RSP   R RS S S+
Sbjct: 2025 AIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSS 2084

Query: 303  SSR 305
            S R
Sbjct: 2085 SDR 2087



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 70/252 (27%), Positives = 93/252 (36%), Gaps = 56/252 (22%)

Query: 68   ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
            AS+G+    + ++   +    +S+ SSS SSSSS+SS S SSS+S  SSSS S GS  P 
Sbjct: 2511 ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPV 2570

Query: 128  RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKI 187
            +         R  S  P   E  R+ R P P P K    R  R+ +        S+    
Sbjct: 2571 Q---PEVALKRVPSPTPAPKEAVREGRPPEPTPAK----RKRRSSSSSSSSSSSSSSSSS 2623

Query: 188  KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPP 247
                          S   +     +P  A+                       P P+  P
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAK-----------------------PGPQALP 2660

Query: 248  RRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRR------------RSPVRRR--SRSPGRR 293
            +  SP            + PP   RRSRSPR+             SPV RR  S  P  R
Sbjct: 2661 KPASP------------KKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPR 2708

Query: 294  RHRSRSSSNSSR 305
              +S SS   SR
Sbjct: 2709 DQQSSSSERGSR 2720



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 91/309 (29%), Positives = 121/309 (39%), Gaps = 30/309 (9%)

Query: 20   KSSTRAPSPTKRKDRSDEK--SKDRSKDKGATKESSEKDRGRDKTRKRRS--ASSGSSST 75
            K+ +R P P +R  RS  +   K R   +  +  SS + R R   R RRS   SS   + 
Sbjct: 1679 KTKSRTP-PRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAE 1737

Query: 76   RSRSSSTSSSGSS--TSTGSSSGSSSSS-------ASSRSGSSSTSRSSSSSSSSGSPSP 126
            +SRSS    S SS  T T S  G S S        + SRS    T  +     S  S S 
Sbjct: 1738 KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQST 1797

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGK 186
            SRRR   R RSRS+    +R       RSP+ + +     R  R   +           +
Sbjct: 1798 SRRRQ--RSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRG--RSRTPPTSRKRSR 1853

Query: 187  IKMIDMPVERMHPHLSKG-YAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRP 245
             +    P +R     S   +       P  + +  +         +  + T+V     R 
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913

Query: 246  PPRRFSPPRRMLPPPPMWRR----SPPRMRRRSRSPRRRSPV-RRRSRS----PGRRRHR 296
                 S  R     PP+ RR      P  RRRSRS  R  PV RRRSRS      RRR R
Sbjct: 1914 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRS--RTPPVTRRRSRSRTPPVTRRRSR 1971

Query: 297  SRSSSNSSR 305
            SR+S  + R
Sbjct: 1972 SRTSPITRR 1980



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 77/296 (26%), Positives = 107/296 (36%), Gaps = 67/296 (22%)

Query: 27  SPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSG 86
           SPT+  DRS  KS ++     +++ S    +    +R   S+        +  S    S 
Sbjct: 398 SPTR--DRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISS 455

Query: 87  SSTSTGSSSG-----SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRR-----R 136
           S TS   S G      S S   SR    S S +++    S S +P++R H   R     R
Sbjct: 456 SPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRR 515

Query: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196
           SRS  +  +    +R+ RS SP+                                     
Sbjct: 516 SRSAQRWGRSRSPQRRGRSRSPQ------------------------------------- 538

Query: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRM 256
             P  S+            A +   H       G+  + T    P  R   R  +P RR 
Sbjct: 539 -RPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRT----PARRGRSRSRTPARRR 593

Query: 257 LPPPPMWRRSPPRMRRRSRSP------RRRSPVRRRS--RSPGRRRHRSRSSSNSS 304
                   R+P R R RSR+P      R R+P RRRS  RSP RRR RSRS +  S
Sbjct: 594 -----SRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644



 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 80/298 (26%), Positives = 118/298 (39%), Gaps = 29/298 (9%)

Query: 15  KENNKKSSTRAPSPTK--RKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGS 72
           + ++ +SS  +P PTK  R   S  +S   +   G+ +E S     ++++  R       
Sbjct: 414 QSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSH 473

Query: 73  SSTRSRSSSTSSSGSSTSTGSS-SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
           S T SR    S S ++   G S S + +    SRS S    RS S+     S SP RR  
Sbjct: 474 SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRG- 532

Query: 132 DNRRRSRSKSKP--PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
               RSRS  +P   +    +R+ RS S +  + H    +R+          +T G+ + 
Sbjct: 533 ----RSRSPQRPGWSRSRNTQRRGRSRSARRGRSH----SRSP---------ATRGRSRS 575

Query: 190 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRR 249
              P  R     S+  A     +     +  +     +         A      R P RR
Sbjct: 576 -RTPARRGRSR-SRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRR 633

Query: 250 FSPPRRMLPPPPMWRRSPP--RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
            S  R         R   P  R R RSR+P RR   R RSR+P RR  RSRS + + R
Sbjct: 634 RSRSRSPARRSGRSRSRTPARRGRSRSRTPARRG--RSRSRTPARRSGRSRSRTPARR 689



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 51/171 (29%), Positives = 68/171 (39%), Gaps = 35/171 (20%)

Query: 15   KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
            KE  ++     P+P KRK RS   S   S    ++  SS             S+SS SSS
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSS 2637

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS------SSSSSSSGSPSPSR 128
            + S SSS+SSS S    G  +    +S          SRS      S   S S S SP  
Sbjct: 2638 SSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVE 2697

Query: 129  RR-----------------HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            RR                   +RR  R  S+ P     +R+R +PSP+P +
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSH---KRRRETPSPRPMR 2745



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 77/312 (24%), Positives = 109/312 (34%), Gaps = 34/312 (10%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGR--DKTRKRRSASSGSSSTR 76
           +++   AP P K      E S  RS      K+  +KDRGR  + +  RR     S   +
Sbjct: 158 REAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKK 217

Query: 77  SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
            RS S S      S    S    S    R  S ST+ +  S  +  S S       +  R
Sbjct: 218 HRSESESKKRKHRSPTPKS-KRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSR 276

Query: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRL------TRNVTKDHIMEIFSTYGKIKMI 190
           SRS+S   K        RSPSP   +   G        T +  +    E  +        
Sbjct: 277 SRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYE 336

Query: 191 DMPVERMHPHLSKGYAYVEFEN----PDEAEKALKHMDGGQIDGQEITATAVLAPWPRPP 246
           D   ++     ++     E  +    P      L    GG     +  AT  L+  P  P
Sbjct: 337 DKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGG---SPQPLATTPLSQEPVNP 393

Query: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSR------SPRRRSPVRRRSRSPGRRR------ 294
           P   SP R   PP     +SP ++ + S       SP+     R  S SP   +      
Sbjct: 394 PSEASPTRDRSPP-----KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPG 448

Query: 295 -HRSRSSSNSSR 305
            HR  SSS +S+
Sbjct: 449 SHREISSSPTSK 460



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 86/310 (27%), Positives = 118/310 (38%), Gaps = 62/310 (20%)

Query: 20  KSSTRAPSPTKRKDRSDEKSK-DRSKDKGATKESSEKDRGRDKTRKR---RSASSGSSST 75
           KS +  PS    + RS   +K  RS+ +  TK    + R     R R   R   S S   
Sbjct: 471 KSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQR 530

Query: 76  RSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSST-------SRSSSSSSSSGSPSPS 127
           R RS S    G S S  +   G S S+   RS S S        SR+ +    S S +P+
Sbjct: 531 RGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPA 590

Query: 128 RRRHDNRR--RSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYG 185
           RRR  +R   R RS+S+ P R  + R  R+P+ + ++      TR+              
Sbjct: 591 RRRSRSRTPTRRRSRSRTPARRGRSRS-RTPARRRSR------TRS-------------- 629

Query: 186 KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRP 245
                  PV R     S         +   A +           G+  + T         
Sbjct: 630 -------PVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRT--------- 673

Query: 246 PPRRFSPPRRMLPPPPMWR---RSPPRMRRRSRSPRR------RSPVRR-RSRSPGRRRH 295
            P R S   R   P    R   R+P R R RSRS  R      R+P RR RS S   R++
Sbjct: 674 -PARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKN 732

Query: 296 RSRSSSNSSR 305
           +SR+S   SR
Sbjct: 733 KSRTSQRRSR 742



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 11/144 (7%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSR 78
            K+S +RA   T R+ RS      R + +  T   S + R R +T   R  S   +S  SR
Sbjct: 1862 KRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRR-RSRSRTSVTRRRSRSRASPVSR 1920

Query: 79   SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR---- 134
              S S +   T   S S + ++   SRS +   +R  S S +   P  +RRR  +R    
Sbjct: 1921 RRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRT---PPVTRRRSRSRTSPI 1977

Query: 135  --RRSRSKSKPPKRDEKERKRRSP 156
              RRSRS++ P  R  + R R SP
Sbjct: 1978 TRRRSRSRTSPVTR-RRSRSRTSP 2000



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 18   NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKE-SSEKDRGRDKTRKRRSASSGSSSTR 76
            +++ S    S T+R+ RS      R + +  T   +  + R R  T +RRS S     TR
Sbjct: 1896 SRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTR 1955

Query: 77   SRSSS--------TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSR 128
             RS S         S S +S  T   S S +S  + R   S TS  +   S S +   +R
Sbjct: 1956 RRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTR 2015

Query: 129  RRHDNRR----RSRSKSKPPKRDEKERKRRSP 156
            RR  +R     R RS+S+ P    K  + RSP
Sbjct: 2016 RRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSP 2047



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK-TRKR 65
            +++S        ++S +RA   ++R+ RS      R + +  T  +  + R R     +R
Sbjct: 1897 RRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956

Query: 66   RSASSGSSSTRSRSSSTSS--------SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
            RS S     TR RS S +S        S +S  T   S S +S  + R   S TS  +  
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR 2016

Query: 118  SSSSGSPSPSRRRHDNRR----RSRSKSKPPKRDEKERKRRSP 156
             S S +P   RRR  +R     R RS+S+ P    +  + R+P
Sbjct: 2017 RSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTP 2059



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 18   NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGR-DKTRKRRSASSGSSSTR 76
            +++S +R P  ++R+ RS      R + +  T  +  + R R     +RRS S     TR
Sbjct: 1873 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTR 1932

Query: 77   SRSSST-------SSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
             RS S        S S +   T   S S +   + R   S TS  +   S S +   +RR
Sbjct: 1933 RRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRR 1992

Query: 130  RHDNR------RRSRSKSKPPKRDEKERKRRSPS 157
            R  +R      RRSRS++ P  R  + R R  P+
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTR-RRSRSRTPPA 2025



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 27/164 (16%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTR 76
           + +K+ +R      R + S E  K R   + +   SS + + + +   RRS S  S   +
Sbjct: 728 SERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPK 787

Query: 77  SRSSST---SSSGSSTSTGSSS-----GSSSSSASSRSGSSSTSRSSSSSSS------SG 122
            +S +    S SGSS     S        SSSS   +  S + SR S SSSS      SG
Sbjct: 788 QKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSG 847

Query: 123 SP-------SPSRRRHD--NRRRSRSKSKPPKRDEKERKRRSPS 157
           +P       SP         +RRS  +S P    + E K R+PS
Sbjct: 848 TPPRQGSITSPQANEQSVTPQRRSCFESSP----DPELKSRTPS 887



 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 82/344 (23%), Positives = 120/344 (34%), Gaps = 73/344 (21%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT----RKRRSASSGSSS 74
            K+ STR+   +     S E S D  +  G +   S      D       + RS+S+ S  
Sbjct: 1372 KEQSTRSSGHS-----SSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPE 1426

Query: 75   TRSRSSSTSS--SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG------SPSP 126
             +     T S  S S +S G   GS + S  S SGSS   +    + S G      SP P
Sbjct: 1427 MKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEP 1486

Query: 127  SRRRHDNRRRSRSKSKP--------PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHI- 177
                   R RSRS S P        P+R+    +         +  +G+ +R+ +   + 
Sbjct: 1487 KALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELD 1546

Query: 178  --------------------------MEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEF- 210
                                      +   S  G    +D    R+ P  S+  +  E  
Sbjct: 1547 VKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSK-SRLSPRRSRSGSSPEVK 1605

Query: 211  ENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPR--RFSPPRRMLPPPPMWRRS-- 266
            + P  A +A    D         ++    AP PR  PR  R     +   P P    S  
Sbjct: 1606 DKPRAAPRAQSGSD---------SSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE 1656

Query: 267  -----PPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
                 PP+ R   R  R     + +SR+P RRR  SRSS   +R
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRR-SSRSSPELTR 1699



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 72/312 (23%), Positives = 101/312 (32%), Gaps = 39/312 (12%)

Query: 25  APSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSST-- 82
           A + T +    +EK  +R +      +S       D  R+ R A   +       S    
Sbjct: 117 AVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRE 176

Query: 83  SSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG---SPSPSRRRHDNRRRSRS 139
           SSS  S +              RS SSS  R    SS      S S S++R    R    
Sbjct: 177 SSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKR--KHRSPTP 234

Query: 140 KSKPPKRDEKERKRRS--PSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM 197
           KSK   +D+K ++ RS  P+PK  + H      + +        S     K     +   
Sbjct: 235 KSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGR 294

Query: 198 HPHLSKGY-----------AYVEFENPDEAEKALKH----MDGGQIDGQEITATAVLAPW 242
            P  + G                 + P   E A K      +    D +E +AT      
Sbjct: 295 SPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATR----- 349

Query: 243 PRPPPRRFSP-PRRMLPPPPMWRR---------SPPRMRRRSRSPRRRSPVRRRSRSPGR 292
           P P P R S  P    P P +  R         + P  +     P   SP R RS     
Sbjct: 350 PSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSP 409

Query: 293 RRHRSRSSSNSS 304
            +    SSS SS
Sbjct: 410 EKLPQSSSSESS 421



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 19   KKSSTRAPSPTKRKDRSDE----KSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
            ++S +R P   +R+ RS      + + RS+   A +  S + R     R +RS +    +
Sbjct: 2016 RRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRS-RSRTPRTARGKRSLTRSPPA 2074

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
             R RS+S SSS  S S    +  + S + +   + ++SR S  S  S SP+P  R
Sbjct: 2075 IRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDR 2129



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 66/273 (24%), Positives = 99/273 (36%), Gaps = 33/273 (12%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT-----RKRRSASSGSS 73
            ++S +R    T+R+ RS      R + +  T   + + R R +T     R+ RS +    
Sbjct: 1980 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTPPAIRRRSRSRTPLLP 2038

Query: 74   STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS---PSRRR 130
              RSRS S  +    + + +   +    + +RS  +   RS+S SSS  S S   P+ R 
Sbjct: 2039 RKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRN 2098

Query: 131  HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
            H   R         +     R   SP+P       G L    +    M +    G   M+
Sbjct: 2099 HSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGG-SMM 2157

Query: 191  DMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRF 250
            D P  R+  H          EN  ++  AL               TA+     RPPP   
Sbjct: 2158 DGPGPRIPDHQRTSVP----ENHAQSRIAL-------------ALTAISLGTARPPPSMS 2200

Query: 251  SP--PRRM----LPPPPMWRRSPPRMRRRSRSP 277
            +     RM     P P M  R+ P     SR P
Sbjct: 2201 AAGLAARMSQVPAPVPLMSLRTAPAANLASRIP 2233



 Score = 35.4 bits (80), Expect = 0.063
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 47   GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
            G + E  E   G    +     S       +RSS  SSS  S      +G SS+ + S  
Sbjct: 1346 GFSSEVKEDLNGPFLNQLETDPSLDMKEQSTRSSGHSSSELSPDAVEKAGMSSNQSISSP 1405

Query: 107  GSSSTSRSSSSSSSSGSPSPSRRRHDNR---RRSRSKSKPPKRD 147
               +  R+ S   SS + SP  +    R   RRSRS S P  RD
Sbjct: 1406 VLDAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRD 1449



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 20   KSSTRAPSPTKR---KDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSS--- 73
            +++ ++ +P +R   +   D + K R+  + +   SS   R +  T  R+S S  SS   
Sbjct: 859  QANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPP-RVKSSTPPRQSPSRSSSPQP 917

Query: 74   ------STRSRSSSTSSSGS-STSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
                  S R RS S SSS S S  T  ++   S S S  S   S      S S S SP  
Sbjct: 918  KVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDT 977

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
              +     R+S S S  P    K +    PS   +K
Sbjct: 978  KVKPETPPRQSHSGSISPYPKVKAQTPPGPSLSGSK 1013



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 34/130 (26%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 21   SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80
            S  R  S T  +      S  + K K           G       R  +S ++  RSRS 
Sbjct: 895  SPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSR-VTSRTTPRRSRSV 953

Query: 81   STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
            S  S+  S      S S SSS  ++    +  R S S S S  P    +       S SK
Sbjct: 954  SPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSLSGSK 1013

Query: 141  SKPPKRDEKE 150
            S  P+   K+
Sbjct: 1014 SPCPQEKSKD 1023


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 61/160 (38%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
           KE+  +        +K K   DE   D    K     S E+D  + K+ +R  + S SS 
Sbjct: 151 KESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH 210

Query: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRS------SSSSSSSGSPSPS 127
           +RS S S+S S S + + S S SSSSS S SRS S   SRS      SSS S  GS SP 
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270

Query: 128 RRRHD--------NRRRSRSKSKPPKRDEKERKRRSPSPK 159
           +R +         NR+RSRS+S     D K+R+ RS SP+
Sbjct: 271 KRSYSSSSSSPERNRKRSRSRSS-SSGDRKKRRTRSRSPE 309



 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS---G 71
           + ++ +SS+R+ SP+  + RS  +S+  S  +  ++ SS ++R R +  K RS+S    G
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRG 265

Query: 72  SSSTRSRSSSTSSSG------SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
           SSS R RS S+SSS        S S  SSSG      +         RSSS SS SGS S
Sbjct: 266 SSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRS 325

Query: 126 PSRRR 130
            S+++
Sbjct: 326 SSKKK 330



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)

Query: 19  KKSSTRAPSPT---KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
           KK   +A  P    K  +  + + ++  +D+  +K   ++D   D               
Sbjct: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED--------------- 176

Query: 76  RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNR 134
               +  S      S    S    S+  SRS S SS SRSSS SS   SPS SR R  +R
Sbjct: 177 ---DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS---SPSSSRSRSRSR 230

Query: 135 RRSRSKSKPPKRD---EKERKRRSPSPKPTKVHIG 166
            RS S S+   R    E+ R R S S   ++ H G
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 264 RRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           ++S  R R +SRS   RS  R  S S  R R RSRS S+SS
Sbjct: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 266 SPPRMRRRSRSPRR----RSPVRRRSRSPGRRRHRSRSSSNSS 304
           SP R R+RSRS       R   R RSRSP  RRHRS S S+ S
Sbjct: 280 SPERNRKRSRSRSSSSGDRKKRRTRSRSP-ERRHRSSSGSSHS 321



 Score = 32.3 bits (72), Expect = 0.54
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSP--GRRRHRSRSSSNSSR 305
           RS  R  R S SPR+RS     S SP   R+R RSRSSS+  R
Sbjct: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSSGDR 298



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           SP   R RSRS  R  S  + RSRS  R R RSR S + S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 16/55 (29%)

Query: 265 RSPPRMRRRSR---------------SPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           RS  R R RSR               SPR+RS     S SP R R RSRS S+SS
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 264 RRSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSS 301
           R S  R   RS SP   RS  R RSRS    + RSRSSS
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245


>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
          Length = 320

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 61/160 (38%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
           KE+  +        +K K   DE   D    K     S E+D  + K+ +R  + S SS 
Sbjct: 151 KESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH 210

Query: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRS------SSSSSSSGSPSPS 127
           +RS S S+S S S + + S S SSSSS S SRS S   SRS      SSS S  GS SP 
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270

Query: 128 RRRHD--------NRRRSRSKSKPPKRDEKERKRRSPSPK 159
           +R +         NR+RSRS+S     D K+R+ RS SP+
Sbjct: 271 KRSYSSSSSSPERNRKRSRSRSS-SSGDRKKRRTRSRSPE 309



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS---G 71
           + ++ +SS+R+ SP+  + RS  +S+  S  +  ++ SS ++R R +  K RS+S    G
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRG 265

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
           SSS R RS S+SSS S       S S SSS+  R    + SRS  S
Sbjct: 266 SSSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)

Query: 19  KKSSTRAPSPT---KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
           KK   +A  P    K  +  + + ++  +D+  +K   ++D   D               
Sbjct: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED--------------- 176

Query: 76  RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNR 134
               +  S      S    S    S+  SRS S SS SRSSS SS   SPS SR R  +R
Sbjct: 177 ---DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS---SPSSSRSRSRSR 230

Query: 135 RRSRSKSKPPKRD---EKERKRRSPSPKPTKVHIG 166
            RS S S+   R    E+ R R S S   ++ H G
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 264 RRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           ++S  R R +SRS   RS  R  S S  R R RSRS S+SS
Sbjct: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236



 Score = 32.3 bits (72), Expect = 0.54
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSP--GRRRHRSRSSSNSSR 305
           RS  R  R S SPR+RS     S SP   R+R RSRSSS+  R
Sbjct: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSSGDR 298



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           SP   R RSRS  R  S  + RSRS  R R RSR S + S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 16/55 (29%)

Query: 265 RSPPRMRRRSR---------------SPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           RS  R R RSR               SPR+RS     S SP R R RSRS S+SS
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 264 RRSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSS 301
           R S  R   RS SP   RS  R RSRS    + RSRSSS
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 75.5 bits (184), Expect = 6e-14
 Identities = 81/297 (27%), Positives = 114/297 (38%), Gaps = 35/297 (11%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
           K +S    +  +KK  +R+PS  K + RS    K RSK K   +E  + +    K  K R
Sbjct: 231 KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKP-KSR 289

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
           S S   S ++SRS S          GS S   S   S R   S +     S S S S S 
Sbjct: 290 SPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSK 349

Query: 127 SRRRHDNRRRSR--SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTY 184
           S+ +   R+RSR  S+S+   R + ER R+  S + +K    +  +    D       + 
Sbjct: 350 SKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDR------SQ 403

Query: 185 GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR 244
            +     +  ER H                         +  Q +G+  +  A      R
Sbjct: 404 SRSPSRSVSKEREH----------------------AKSESSQREGRGESENAGTNQETR 441

Query: 245 PPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
              R  S  +  LP      RS    + RSRS   +S  R  SRSP R R RS S S
Sbjct: 442 SRSRSNSKSKPNLPSESR-SRSKSASKTRSRS---KSRSRSASRSPSRSRSRSHSRS 494



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 4/140 (2%)

Query: 13  GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR-RSASSG 71
           G +     S +R+ S ++ + R   KS+ RS   G++K S  K R R ++  R RS S  
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRS---GSSKSSHSKSRSRSRSGSRSRSKSRS 234

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
            S +RSRS    S   S     S   S+  + S+S   +  +  ++ +     S S  RH
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRH 294

Query: 132 DNRRRSRSKSKPPKRDEKER 151
            ++ +SRS+S+  + +E++R
Sbjct: 295 KSKSKSRSRSQERRVEEEKR 314



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 62  TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSSS 120
           +R+RRS S   S +RSRS S  S  S + +GSS  S S S S SRSGS S S+S S S S
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238

Query: 121 SG------SPSPSRRRHDNRRRSRSKSKPPKRDEKERK 152
                   S SPS+ +  +R  S  KS+   +D+ E K
Sbjct: 239 RSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEK 276



 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 13/128 (10%)

Query: 44  KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103
           +DK  ++      R R  +R R S S  S  +RSRS S+ SS S + + S SGS S S  
Sbjct: 174 EDKPGSRRRRSYSRSRSHSRSR-SRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRS-- 230

Query: 104 SRSGSSSTSRSSSSSSSSGSPS--PSRRRHDNRRRSRSKSKPPKRDEKER-------KRR 154
            +S S S SRS S    S SPS   SR R  +  +SRSKSK    ++ +        K R
Sbjct: 231 -KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSR 289

Query: 155 SPSPKPTK 162
           SPS   +K
Sbjct: 290 SPSRHKSK 297



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 62/218 (28%), Positives = 88/218 (40%), Gaps = 35/218 (16%)

Query: 100 SSASSRSGSSSTSRS---------SSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD-EK 149
           S + SRS S S SRS         S SS SS S S SR R  +R RS+S+S+   R   K
Sbjct: 184 SYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSK 243

Query: 150 ERKRRSPSPKP--TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAY 207
           + K RSPS +   ++ H    +R+ +KD   E       +          H   SK  + 
Sbjct: 244 KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSR 303

Query: 208 VEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSP 267
            +    +E ++       G +        ++     R   +  S             RS 
Sbjct: 304 SQERRVEEEKR-------GSVSRGRSQEKSLRQSRSRSRSKGGS-------------RSR 343

Query: 268 PRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
            R R +S+  R+    R+RSR   R R RSRS S  SR
Sbjct: 344 SRSRSKSKDKRKG---RKRSREESRSRSRSRSKSERSR 378



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 4   SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
           S  KKK     KE+  +S +R+PS +  K+R   KS+   ++     E++    G ++  
Sbjct: 390 SSKKKK-----KEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENA----GTNQET 440

Query: 64  KRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
           + RS S+  S     S S S S S++ T S S S S SAS RS S S SRS S S
Sbjct: 441 RSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS-RSPSRSRSRSHSRS 494



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
           GS    R  +  RR  R K  PP R E             ++ +  L+   +   + +  
Sbjct: 77  GSYGSGRSGYGYRRSGRDKYGPPTRTEY------------RLIVENLSSRCSWQDLKDYM 124

Query: 182 STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 241
              G++   D    R      K    +EF +  + ++AL+ +DG +++G++I        
Sbjct: 125 RQAGEVTYADAHKGR------KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVE---- 174

Query: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP---VRRRSRSPGRRRHRSR 298
             +P  RR     R         RS    + RSRS   +S     R RSRS  R R +SR
Sbjct: 175 -DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSR 233

Query: 299 SSSNS 303
           S S S
Sbjct: 234 SRSQS 238



 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
           +V+IGRL+    +  +   F  YGKI  +D         L  GY +VEF++  +A+ A+ 
Sbjct: 3   RVYIGRLSYQARERDVERFFKGYGKILEVD---------LKNGYGFVEFDDLRDADDAVY 53

Query: 222 HMDGGQIDGQEITATAVLAP 241
            ++G  + G+ +       P
Sbjct: 54  ELNGKDLCGERVIVEHARGP 73



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 57/199 (28%), Positives = 77/199 (38%), Gaps = 32/199 (16%)

Query: 110 STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLT 169
           S  R S S S S S S SR RH  + RSRS S      +   + RS S   +K      +
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238

Query: 170 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 229
           R+ +K           K +       R   H S G +    ++ D+AE+ +++ D     
Sbjct: 239 RSRSKKE---------KSRSPSKEKSRSRSH-SAGKS--RSKSKDQAEEKIQNNDN---- 282

Query: 230 GQEITATAVLAPWPRPPPRRFSPPRRMLPPPPM-----WRRSPPRMRRRSRSPRRRSPVR 284
                   V  P  R P R  S  +              R S  R R + +S R+    R
Sbjct: 283 --------VGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQS---R 331

Query: 285 RRSRSPGRRRHRSRSSSNS 303
            RSRS G  R RSRS S S
Sbjct: 332 SRSRSKGGSRSRSRSRSKS 350


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 47/103 (45%), Positives = 62/103 (60%)

Query: 21   SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80
            SS+ + S +   +   E+  D++ D G             +     S+SS SSS+ S SS
Sbjct: 2568 SSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSS 2627

Query: 81   STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
            S+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 13   GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSK---DKGATKESSEKDRGRDKTRKRRSAS 69
            G +E+   SS+ + S +     S   S+   +   DK          R       R ++ 
Sbjct: 2553 GAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASP 2612

Query: 70   SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
            + SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S S S  
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672

Query: 130  RHDNRRRSRSKSKPP 144
              ++   S      P
Sbjct: 2673 TDEDSSCSSDDEAAP 2687



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 49/136 (36%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 18   NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRS 77
            N KS  +A +     + S+  S   S    ++  SS      +   +      G   T  
Sbjct: 2540 NPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGG 2599

Query: 78   RSSSTSSS-----GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
            R+ S +SS      SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S S S     
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659

Query: 133  NRRRSRSKSKPPKRDE 148
            +   S S S     DE
Sbjct: 2660 SSSSSSSSSSSSTTDE 2675



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 17   NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTR 76
            N   +S+RA SP      S   S   S    ++  SS              +SS SSS+ 
Sbjct: 2601 NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSS--------------SSSSSSSSS 2646

Query: 77   SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
            S SSS+SSS SS+S+ SSS SSSSS +    S S+   ++ + ++G PS          +
Sbjct: 2647 SSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG-PSAQAALPTKATK 2705

Query: 137  SRSKSKP----PKRDEKERKRRSPSPKPTK 162
               K++P    P +     + ++P P+PT+
Sbjct: 2706 QAGKARPSAHSPGKKTPAPQPQAPPPQPTQ 2735



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 55/160 (34%), Positives = 69/160 (43%), Gaps = 43/160 (26%)

Query: 40   KDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSS--------------- 84
            +D    K   K  +E+D G +++    S+SSGSSS    SSS+SS               
Sbjct: 2536 EDSGNPKSPDKAQAEQD-GAEESESSSSSSSGSSS----SSSSSSSSGSETEGEEEGDKN 2590

Query: 85   -----------------------SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
                                   S SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2650

Query: 122  GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT 161
             S S S     +   S S S     D         +P PT
Sbjct: 2651 SSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPT 2690



 Score = 35.0 bits (79), Expect = 0.083
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 71   GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
            G   T   S +  S   + +    +  S SS+SS SGSSS   SSSSSSSSGS +     
Sbjct: 2530 GPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSS---SSSSSSSSGSETEGEEE 2586

Query: 131  HD 132
             D
Sbjct: 2587 GD 2588



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 36/198 (18%)

Query: 81  STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
           S + S  +   G SSG+ +  +SSR G +        +   G P P   + D R R    
Sbjct: 178 SHAPSARTPGGGHSSGAPAKGSSSRDGPAK-----ERAGRGGEPPPLFGKKDPRARGEEA 232

Query: 141 SKP-------PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME---IFSTYGKIKMI 190
           S P        +   + R+ R P P+  +     L  + TK+  ++   +    G    +
Sbjct: 233 SGPRGVVDLTQEARAEGRQDRGP-PRLAERLSPFLAESKTKNAALQPSVLTMCNGGAGDV 291

Query: 191 DMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRF 250
            +P            A V       A++A +  +G ++    +  T  L P PRP P   
Sbjct: 292 GLP------------ALVAEAGRGGAKEAARQDEGARL----LRRTETLLPGPRPCPSPL 335

Query: 251 SPPRRMLPPPPMWRRSPP 268
            PP    P PP    +PP
Sbjct: 336 PPP----PAPPKGPPAPP 349



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 248  RRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRS 289
            RR S  RR  P   + RR P R R+R+ +P   SP R+R +S
Sbjct: 1507 RRDSEDRREEPHRSLARRGPGRPRKRTHAPSALSPPRKRGKS 1548



 Score = 32.7 bits (73), Expect = 0.41
 Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 36/151 (23%)

Query: 43   SKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
            S+ K    ++++ D  ++         SG+  +  ++ +       + + SSS S SSS+
Sbjct: 2511 SEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSS 2570

Query: 103  SSRSGSS------------------------------------STSRSSSSSSSSGSPSP 126
            SS S SS                                    S+S SSSSSSSS S S 
Sbjct: 2571 SSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSS 2630

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
            S     +   S S S             S S
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2661



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 30   KRKDRSDEKSKDR--SKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGS 87
            K K R   K + R  S+D+      S   RG  + RKR  A S  S  R R  S  SSG 
Sbjct: 1495 KEKQRELVKLQRRRDSEDRREEPHRSLARRGPGRPRKRTHAPSALSPPRKRGKSGHSSGK 1554

Query: 88   STS 90
             +S
Sbjct: 1555 LSS 1557


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 86/296 (29%), Positives = 121/296 (40%), Gaps = 37/296 (12%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGA------TKESSEKDRGRDK--TRKRRSASSGSS 73
            S  +P  +   +R+ E S +   D         T E S+K++ RDK    K+R +S  S 
Sbjct: 1766 SAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSR 1825

Query: 74   STRSRSSSTSS-SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
            S RS+SS   S   +S S   +   SS S S RS + S SRS     SS S S SR R  
Sbjct: 1826 SKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRS 1885

Query: 133  NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
              +  R +S   +   +ERKR+  S +  +  +   +R  ++                  
Sbjct: 1886 VSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRR----------------- 1928

Query: 193  PVERMH-PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFS 251
               R H P   +    V          + +     +        +   +   R P RR  
Sbjct: 1929 --SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSR 1986

Query: 252  PPRRMLPPPPMWRRSPPRMRRRS------RSPRRRSPVRRR-SRSPGRRRHRSRSS 300
             P R    P   RRS   +RRRS      R  R R+P+RRR SRSP RR+ RSRSS
Sbjct: 1987 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRK-RSRSS 2041



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 15   KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK--------DRGRDKTRKRR 66
            K  + +S TR+ S ++R+ RS   S+ RSK +G    S EK         + R++ RKR 
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRS 1909

Query: 67   SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
            S+     + R+RS + S           S S + S   RS S    RS S S S  S +P
Sbjct: 1910 SSRDNRKTVRARSRTPSRR---------SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTP 1960

Query: 127  SRRRHDNRRRSRS---KSKPPKRDEKERKRRSPSP 158
            SRR     RRSR+   +S+ P R  +   RRS +P
Sbjct: 1961 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995



 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 21/165 (12%)

Query: 13   GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG--ATKESSEKDRGRDKTRKRRSASS 70
            G KE  + SS R+ S  KR   S+ KS+ R+ +    A K SS+    R +TR R  +  
Sbjct: 1812 GEKEKKRDSSLRSRS--KRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869

Query: 71   GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
               S+RSRS S      S      S    S +  R    S+SR +  +  + S +PSRR 
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929

Query: 131  HDN----RRRSRS-------------KSKPPKRDEKERKRRSPSP 158
              +    RRRSRS             +S+ P R  +   RRS +P
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 48/147 (32%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 16   ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS-SGSSS 74
            E +KK+  R     ++K  S  +S+ +       K        R + RKR S S S  S 
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
            TRSRS S     SS S   S G  S S   R    S    S S       S SR   DNR
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKR--KRSPKHRSKSRERKRKRSSSR---DNR 1915

Query: 135  RRSRSKSKPPKRDEK----ERKRRSPS 157
            +  R++S+ P R  +     R+RRS S
Sbjct: 1916 KTVRARSRTPSRRSRSHTPSRRRRSRS 1942



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKR 65
            K +    V +  +K S +  S ++ + R    S+D  K  +  ++  S + R    +R+R
Sbjct: 1879 KSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938

Query: 66   RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
            RS S G    R RS S S S  S +    S + S  + + S  S T    S + S  S +
Sbjct: 1939 RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1994

Query: 126  PSRRRHDN---RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            PSRRR      RRRS S S    R  +   RR  S  P +
Sbjct: 1995 PSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
            +K+     ++N K    R+ +P++R        + RS+  G  +  S     R +T  RR
Sbjct: 1904 RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRR 1963

Query: 67   SAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
            S + S  S T SR S T S  S T +   S + S    SRS     S S S      S +
Sbjct: 1964 SRTPSRRSRTPSRRSRTPSRRSRTPS-RRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRT 2022

Query: 126  PSRRRHD----NRRRSRS--KSKPPKR 146
            P RRR       R+RSRS  + + PKR
Sbjct: 2023 PLRRRFSRSPIRRKRSRSSERGRSPKR 2049



 Score = 36.6 bits (83), Expect = 0.028
 Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 248  RRFSPPRRMLPPPPMWRRSPPR-----MRRRSRSPRRRSPV-----RRRSRSPGRRRHRS 297
            R+ SP  R        +RS  R     +R RSR+P RRS       RRRSRS GRRR  S
Sbjct: 1891 RKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFS 1950

Query: 298  RSSSNSSR 305
             S S  SR
Sbjct: 1951 ISPSRRSR 1958



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 264  RRSPPRMRRRSRSPR---RRSPVRRRSRSPGRRR-HRSRSSSNSSR 305
            R S  R R R RS +    RS  R RSRS  RRR  RSRS S   R
Sbjct: 1839 RTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRR 1884



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 265  RSPPRMRRRSRSPRRRSPVRR------RSRSP-----GRRRHRSRSSSNSSR 305
            RS  R RRRS   R +S  RR      R RSP      R R R RSSS  +R
Sbjct: 1864 RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 86/296 (29%), Positives = 121/296 (40%), Gaps = 37/296 (12%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGA------TKESSEKDRGRDK--TRKRRSASSGSS 73
            S  +P  +   +R+ E S +   D         T E S+K++ RDK    K+R +S  S 
Sbjct: 1766 SAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSR 1825

Query: 74   STRSRSSSTSS-SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
            S RS+SS   S   +S S   +   SS S S RS + S SRS     SS S S SR R  
Sbjct: 1826 SKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRS 1885

Query: 133  NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
              +  R +S   +   +ERKR+  S +  +  +   +R  ++                  
Sbjct: 1886 VSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRR----------------- 1928

Query: 193  PVERMH-PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFS 251
               R H P   +    V          + +     +        +   +   R P RR  
Sbjct: 1929 --SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSR 1986

Query: 252  PPRRMLPPPPMWRRSPPRMRRRS------RSPRRRSPVRRR-SRSPGRRRHRSRSS 300
             P R    P   RRS   +RRRS      R  R R+P+RRR SRSP RR+ RSRSS
Sbjct: 1987 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRK-RSRSS 2041



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 15   KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK--------DRGRDKTRKRR 66
            K  + +S TR+ S ++R+ RS   S+ RSK +G    S EK         + R++ RKR 
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRS 1909

Query: 67   SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
            S+     + R+RS + S           S S + S   RS S    RS S S S  S +P
Sbjct: 1910 SSRDNRKTVRARSRTPSRR---------SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTP 1960

Query: 127  SRRRHDNRRRSRS---KSKPPKRDEKERKRRSPSP 158
            SRR     RRSR+   +S+ P R  +   RRS +P
Sbjct: 1961 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995



 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 21/165 (12%)

Query: 13   GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG--ATKESSEKDRGRDKTRKRRSASS 70
            G KE  + SS R+ S  KR   S+ KS+ R+ +    A K SS+    R +TR R  +  
Sbjct: 1812 GEKEKKRDSSLRSRS--KRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869

Query: 71   GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
               S+RSRS S      S      S    S +  R    S+SR +  +  + S +PSRR 
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929

Query: 131  HDN----RRRSRS-------------KSKPPKRDEKERKRRSPSP 158
              +    RRRSRS             +S+ P R  +   RRS +P
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 48/147 (32%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 16   ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS-SGSSS 74
            E +KK+  R     ++K  S  +S+ +       K        R + RKR S S S  S 
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
            TRSRS S     SS S   S G  S S   R    S    S S       S SR   DNR
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKR--KRSPKHRSKSRERKRKRSSSR---DNR 1915

Query: 135  RRSRSKSKPPKRDEK----ERKRRSPS 157
            +  R++S+ P R  +     R+RRS S
Sbjct: 1916 KTVRARSRTPSRRSRSHTPSRRRRSRS 1942



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKR 65
            K +    V +  +K S +  S ++ + R    S+D  K  +  ++  S + R    +R+R
Sbjct: 1879 KSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938

Query: 66   RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
            RS S G    R RS S S S  S +    S + S  + + S  S T    S + S  S +
Sbjct: 1939 RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1994

Query: 126  PSRRRHDN---RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            PSRRR      RRRS S S    R  +   RR  S  P +
Sbjct: 1995 PSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
            +K+     ++N K    R+ +P++R        + RS+  G  +  S     R +T  RR
Sbjct: 1904 RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRR 1963

Query: 67   SAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
            S + S  S T SR S T S  S T +   S + S    SRS     S S S      S +
Sbjct: 1964 SRTPSRRSRTPSRRSRTPSRRSRTPS-RRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRT 2022

Query: 126  PSRRRHD----NRRRSRS--KSKPPKR 146
            P RRR       R+RSRS  + + PKR
Sbjct: 2023 PLRRRFSRSPIRRKRSRSSERGRSPKR 2049



 Score = 36.6 bits (83), Expect = 0.028
 Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 248  RRFSPPRRMLPPPPMWRRSPPR-----MRRRSRSPRRRSPV-----RRRSRSPGRRRHRS 297
            R+ SP  R        +RS  R     +R RSR+P RRS       RRRSRS GRRR  S
Sbjct: 1891 RKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFS 1950

Query: 298  RSSSNSSR 305
             S S  SR
Sbjct: 1951 ISPSRRSR 1958



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 264  RRSPPRMRRRSRSPR---RRSPVRRRSRSPGRRR-HRSRSSSNSSR 305
            R S  R R R RS +    RS  R RSRS  RRR  RSRS S   R
Sbjct: 1839 RTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRR 1884



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 265  RSPPRMRRRSRSPRRRSPVRR------RSRSP-----GRRRHRSRSSSNSSR 305
            RS  R RRRS   R +S  RR      R RSP      R R R RSSS  +R
Sbjct: 1864 RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 12/191 (6%)

Query: 53  SEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
           S+ +    + R+ RS S   + T +R  S S SGS + +  S  S S S S RS S S S
Sbjct: 2   SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRS-RSKSRSRS 60

Query: 113 RSSSSSSSSGSPSPS---RRRHDNR------RRSRSKSKPPKRDEKERKRRSPSPKP-TK 162
           R  S    + S S S   RRR  +R      RR RS+S  P  + +       +P P T 
Sbjct: 61  RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC 120

Query: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
           + +  L+   T+  + E+FS YG +  +++ V       S+G+A+V FE  D++++A++ 
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMER 179

Query: 223 MDGGQIDGQEI 233
            +G ++DG+ I
Sbjct: 180 ANGMELDGRRI 190



 Score = 32.7 bits (73), Expect = 0.41
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 253 PRRMLPPPPMWRRSPPRMRRRSRS-PRRRSPVRRRSRSPGRRRH-RSRSSSNSSR 305
           P R+        RSP R+ + S S  R RS  R RSR    RR+ RSRS S+S R
Sbjct: 25  PARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHR 79



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           R R  S S RRRS  R RS +P  RR RSRS S  S
Sbjct: 70  RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103


>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
          Length = 164

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 56/154 (36%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
           R   P   KV++G L  N  K  +   F  YG ++ +   V R  P    G+A+VEFE+P
Sbjct: 3   RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56

Query: 214 DEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSP-PRMRR 272
            +A  A++ +DG  + G  +          R          R   PPP W R P    RR
Sbjct: 57  RDAADAVRELDGRTLCGCRV----------RVELSNGEKRSRNRGPPPSWGRRPRDDYRR 106

Query: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
           RS  PRRRSP RR     RSRS  R R R RS S
Sbjct: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 24  RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR-RSASSGSSSTRSRSSST 82
           R+P P +R  R    S+ RS+       S  +DR R+++  R R+     S +RSRS S 
Sbjct: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159

Query: 83  SS 84
           S+
Sbjct: 160 SN 161


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 103/373 (27%), Positives = 138/373 (36%), Gaps = 109/373 (29%)

Query: 24  RAPSPTK--RKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS------- 74
           + PSP K  +K++  EK++ RS+ +  ++ S  + R    TR RR   S S S       
Sbjct: 257 KEPSPEKNSKKEKEKEKTRPRSRSRSKSR-SRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315

Query: 75  --------------------TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS 114
                                R R S +       S+ S SGSSSSS+SSRS S      
Sbjct: 316 SPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPP 375

Query: 115 SSSSSS-------SGSPSPSRRRH--------------------DNRRRSRSKSKPPKRD 147
             +SS        S S SP RRRH                     NR R    S  P R 
Sbjct: 376 KRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRT 435

Query: 148 E---------KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE--- 195
                     ++R+  SP+PKP KV +     +             GK+   D   +   
Sbjct: 436 SGKVTKHKGTEKRESPSPAPKPRKVELSESEED-----------KGGKMAAADSVQQRRQ 484

Query: 196 -RMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID-GQEITATAVLAPWPR--------- 244
            R     S   +     + DE  K   H+  G++   +  + +   +P PR         
Sbjct: 485 YRRQNQQSSSDSGSSSSSEDERPKR-SHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPR 543

Query: 245 --------PPP--RRFSPP------RRMLPPPPMWRRSP-PRMRRRSRSPRRRSPVRRRS 287
                   PPP  RR SP       RR  P PP  RR+P P  RRRS SPRR SP  +R 
Sbjct: 544 GRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603

Query: 288 RSPGRRRHRSRSS 300
            SP     R  +S
Sbjct: 604 YSPSPPPKRRTAS 616



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 86/307 (28%), Positives = 114/307 (37%), Gaps = 59/307 (19%)

Query: 28  PTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGS 87
           P+   +   E+ K R  ++       ++D  +DK  K    SS     RSRS     S S
Sbjct: 120 PSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRS 179

Query: 88  STSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
                  S    SS   R    S SRS    + S SPSP+  +         K K P+  
Sbjct: 180 P------SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEK---------KEKTPELP 224

Query: 148 EKERKRRSPS-------------PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 194
           E   K + PS             PKP  +          K+   E  S   K K    P 
Sbjct: 225 EPSVKVKEPSVQEATSTSDILKVPKPEPIP-------EPKEPSPEKNSKKEKEKEKTRPR 277

Query: 195 ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPR 254
            R     SK  +     +P       +H    +      +     +P  RP PRR +PPR
Sbjct: 278 SRSR---SKSRSRTRSRSPSHTRPRRRHRSRSR----SYSPRRRPSPRRRPSPRRRTPPR 330

Query: 255 RMLPPPPMWR--RSPPRMRRR-----------SRSPRRRSPVR---RRSRSPGRRRHRSR 298
           RM PPPP  R  RSP R RRR           S S R RSP +   +R+ SP R+  R  
Sbjct: 331 RM-PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLS 389

Query: 299 SSSNSSR 305
            S++  R
Sbjct: 390 PSASPPR 396



 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 94/341 (27%), Positives = 127/341 (37%), Gaps = 79/341 (23%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKD----------RSKDKGATKESSEKDRGRDKTRK 64
           K+  +K  TR  S ++ K RS  +S+           RS+ +  +       R R   R+
Sbjct: 266 KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRR 325

Query: 65  RRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS---- 120
           R          R R S +       S+ S SGSSSSS+SSRS S        +SS     
Sbjct: 326 RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT 385

Query: 121 ---SGSPSPSRRRH--------------------DNRRRSRSKSKPPKRDE--------- 148
              S S SP RRRH                     NR R    S  P R           
Sbjct: 386 RRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGT 445

Query: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH----PHLSKG 204
           ++R+  SP+PKP KV +     +             GK+   D   +R         S  
Sbjct: 446 EKRESPSPAPKPRKVELSESEEDKG-----------GKMAAADSVQQRRQYRRQNQQSSS 494

Query: 205 YAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA-PWPRPPPRRFSPPRRMLPPPPMW 263
            +     + DE  K   H+  G++  +   + +  A P PR   +  SP  R    P   
Sbjct: 495 DSGSSSSSEDERPKR-SHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSP--- 550

Query: 264 RRSPPRMRRRSRSP-------RRRSPV---RRRSRSPGRRR 294
             SPP  RRR RSP       RRR+P    RRR+ SP  RR
Sbjct: 551 --SPPPTRRR-RSPSPAPPPRRRRTPTPPPRRRTPSPPPRR 588



 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 67/319 (21%), Positives = 118/319 (36%), Gaps = 39/319 (12%)

Query: 6   VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD----K 61
           ++++ L  +K+ ++    R     K +  S  + ++RS+     K  S   R R     +
Sbjct: 136 IEQEKLASMKKQDEDKDKR----DKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRR 191

Query: 62  TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
            RKR  + S    T+SRS S +      +      S      S   ++STS         
Sbjct: 192 ERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPE 251

Query: 122 GSP---SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
             P    PS  ++  + + + K++P  R   + + R+ S  P+     R  R+ ++ +  
Sbjct: 252 PIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSP 311

Query: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA-----LKHMDGGQIDGQEI 233
                         P  R  P   +         P    ++      +      + G   
Sbjct: 312 R-----------RRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSS 360

Query: 234 TATAVLAPWPRPPPRRFSPPRRMLPPPPMWRR-----SPPRMRRRSRSPRRRSPVRRRSR 288
           ++++  +   R PP++  PP+R   PP   RR     SPPR R R   P    P  R S 
Sbjct: 361 SSSSSRS---RSPPKK--PPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSP 415

Query: 289 SP--GRRRHRSRSSSNSSR 305
           +P    R  +SR S +  R
Sbjct: 416 TPQQSNRTRKSRVSVSPGR 434



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 84/327 (25%), Positives = 114/327 (34%), Gaps = 87/327 (26%)

Query: 16  ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
           +  +K  + +P+P  RK    E  +D+     A           D  ++RR         
Sbjct: 443 KGTEKRESPSPAPKPRKVELSESEEDKGGKMAAA----------DSVQQRRQYR------ 486

Query: 76  RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR- 134
           R    S+S SGSS+S+       S   +   G     R   S S S SPSP +R+ +   
Sbjct: 487 RQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGR----RRRHSPSRSASPSPRKRQKETSP 542

Query: 135 --RRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
             RR RS S PP R     +RRSPSP P      R  R  T            + +    
Sbjct: 543 RGRRRRSPSPPPTR-----RRRSPSPAPPP----RRRRTPTPPP---------RRRTPSP 584

Query: 193 PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW----PRPPPR 248
           P  R  P            +P      ++         +  TA+    P     P PPP+
Sbjct: 585 PPRRRSP------------SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPK 632

Query: 249 R---FSPPRRMLPPPPMWRRSPPRM----------------------RRRSRSPRRRSPV 283
           R    SPP +    P   RRSP                         +R S SPR R+P 
Sbjct: 633 RRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQ 692

Query: 284 RRRSRSPGRR-----RHRSRSSSNSSR 305
              S  P RR       R +S S S+R
Sbjct: 693 TSSSPPPVRRGASSSPQRRQSPSPSTR 719



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 83/332 (25%), Positives = 111/332 (33%), Gaps = 50/332 (15%)

Query: 10  SLLGVKENNKKSSTRAP--SPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRS 67
           SL G   ++  S +R+P   P KR      K++  S      +             K R 
Sbjct: 354 SLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRH 413

Query: 68  ASSGSSSTRSRSSSTSSSGSSTS------TGSSSGSSSSSASS-RSGSSSTSRSSSSSSS 120
           + +   S R+R S  S S   TS       G+    S S A   R    S S        
Sbjct: 414 SPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKM 473

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           + + S  +RR   R+  +S S        E +R    PK + V  G + R          
Sbjct: 474 AAADSVQQRRQYRRQNQQSSSDSGSSSSSEDER----PKRSHVKNGEVGRRRRHSPSRSA 529

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
             +  K +    P  R     S          P    +            +         
Sbjct: 530 SPSPRKRQKETSPRGRRRRSPS----------PPPTRRRRSPSPAPPPRRRRTPTPPPRR 579

Query: 241 PWPRPPPRRFSP-PRRMLPP--------PPMWRR--------------SPPRMRRRSRSP 277
             P PPPRR SP PRR  PP        PP  RR              SPP  RR S SP
Sbjct: 580 RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639

Query: 278 ---RRRSPV-RRRSRSPGRRRHRSRSSSNSSR 305
              +R SPV +RRS S   +  +  S S S+R
Sbjct: 640 PPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTR 671



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 74/298 (24%), Positives = 105/298 (35%), Gaps = 77/298 (25%)

Query: 8   KKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRS 67
           K   +G +  +  S + +PSP KR+  +  + + R            +      TR+RRS
Sbjct: 513 KNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRR------------RSPSPPPTRRRRS 560

Query: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
            S      R R+ +                 + S   R  S S  R S       SPSP 
Sbjct: 561 PSPAPPPRRRRTPTPPPR-----------RRTPSPPPRRRSPSPRRYSPPIQRRYSPSP- 608

Query: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKI 187
                 +RR+ S   PPKR      R SPSP P +    R++ +                
Sbjct: 609 ----PPKRRTASPPPPPKR------RASPSPPPKR----RVSHSPPP------------- 641

Query: 188 KMIDMPV-ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR-- 244
           K    PV +R  P LS                  KH  G        +     +P P   
Sbjct: 642 KQRSSPVTKRRSPSLSS-----------------KHRKG---SSPSRSTREARSPQPNKR 681

Query: 245 --PPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
             P PR  +P     PPP     S    RR+S SP  R P+RR SR+P  ++ +  +S
Sbjct: 682 HSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTR-PIRRVSRTPEPKKIKKAAS 738



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 11/216 (5%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSS 81
           ++ +P P +R   S  +   R     +T+      R  +  + +++AS    S R  SSS
Sbjct: 693 TSSSPPPVRRGASSSPQR--RQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSS 750

Query: 82  TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS---SSSSSSSGSPSPSR---RRHDNRR 135
            S SGS         +  S   S+S S++ S +     + S + SPSP R   +    ++
Sbjct: 751 RSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKK 810

Query: 136 RSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE 195
           + + K K  K+D+K +K +    K  K         VT   I    +T  + + +  P  
Sbjct: 811 KKKKKDKKHKKDKKHKKHK--KHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEP 868

Query: 196 RMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 231
           +     S+    ++       EKAL+ M   Q+  Q
Sbjct: 869 KKETE-SEAEDNLDDLEKHLREKALRSMRKAQVSPQ 903



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 46/148 (31%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSE---KDRGRDKTRKRRSASSGSSST 75
           K+ +   P P KR+       K R       K+ S    K R    + K R  SS S ST
Sbjct: 611 KRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRST 670

Query: 76  R-SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
           R +RS   +   S +    +  +SSS    R G      +SSS     SPSPS R     
Sbjct: 671 REARSPQPNKRHSPSPRPRAPQTSSSPPPVRRG------ASSSPQRRQSPSPSTR----P 720

Query: 135 RRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            R  S++  PK   K +K  SPSP+  +
Sbjct: 721 IRRVSRTPEPK---KIKKAASPSPQSVR 745



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 35/179 (19%)

Query: 19  KKSSTRAPSPTKR-------KDRSDEKSKDRSKDKGAT-KESSEKDRGRDKTRKRRSASS 70
           K+ ++ +P P +R       K RS   +K RS    +  ++ S   R   + R  +    
Sbjct: 622 KRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKR 681

Query: 71  GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS----------------------GS 108
            S S R R+  TSSS      G+SS      + S S                        
Sbjct: 682 HSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 741

Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDN-----RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            S  R SSS S SGSP P+ ++        + +S S +  P    K+ K  +PSP P +
Sbjct: 742 QSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPR 800



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 19  KKSSTRAPSPTKRKDRSDE---KSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
           KK+ +  PSP+  ++   E   K K + KDK   K+   K   + K  K  +A++ ++ T
Sbjct: 787 KKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVT 846

Query: 76  RSRSSSTSSS 85
            +  ++ +++
Sbjct: 847 PAAIAAATTT 856


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 72/240 (30%), Positives = 105/240 (43%), Gaps = 30/240 (12%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKD----------RGRDKTRK---RRSA 68
           ++R+ SP  R D  D + + R++++        +D          RGR   R     RS 
Sbjct: 185 ASRSRSPN-RFDAHDPRYEPRAREQFTLPSVVHRDIYRDDITREVRGRRPERNYQHSRSR 243

Query: 69  SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSR 128
           S  SS +R++S    +S +S  T S SGS S S SS S S S   SSSS+SS  S S S 
Sbjct: 244 SPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSIS---SSSSTSSDSSDSSSS 300

Query: 129 RRHDNRRRSRSKSKPPKRD-------EKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
              D+  RS   +  P          EK+  R+S   K   + + R T    KD +   F
Sbjct: 301 SSDDSPARSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPV-RSTDTSLKDGLFHEF 359

Query: 182 STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 241
             +GK+  +     ++H    + Y  V F   ++ EKAL    G    G +I  TA + P
Sbjct: 360 KKFGKVTSV-----QIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGP 414



 Score = 37.0 bits (84), Expect = 0.022
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 42  RSKDKGATKESSEKDRGRDKTRK-----------RRSASSGSSSTRS-RSSSTSSSGSST 89
           R +++   +E  E DR RD  R+           RR  S G+S +++ R  S S     +
Sbjct: 698 RQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGASPSQAERLPSDSERRLYS 757

Query: 90  STGSSSGSSSSSASSRSGSSSTSR-----SSSSSSSSGSPSPSRRRHDNRRRSRSKSKPP 144
            +   SGS SS +  R      SR      +  +    +  P R   + R   + K +  
Sbjct: 758 RSSDRSGSCSSLSPPRYEKLDKSRLERYTKNEKTDKERTFDPERVERERRLIRKEKVEKD 817

Query: 145 KRDEKERKRRSPSP 158
           K D+++RK +  SP
Sbjct: 818 KTDKQKRKGKVHSP 831



 Score = 36.2 bits (82), Expect = 0.037
 Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 80/272 (29%)

Query: 30  KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS--------------SGSSST 75
           +R +R+ + S+ RS     ++  S +      +R  RS S              S SSST
Sbjct: 231 RRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSST 290

Query: 76  RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS-----------------RSSSSS 118
            S SS +SSS S  S   S  S++  A +    SS                   RS+ +S
Sbjct: 291 SSDSSDSSSSSSDDSPARSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPVRSTDTS 350

Query: 119 SSSG-----------------SPSPSR------RRHDNRRRSRSKSK------------- 142
              G                   S  R      R+ +++ ++ + SK             
Sbjct: 351 LKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTA 410

Query: 143 ---PPKRDEKERKRRSPS-----PKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 193
              P    E E +          PK T+ + IG L +  T   +  IF  +G+I  ID+ 
Sbjct: 411 WIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIK 470

Query: 194 VERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
                P     YA++++ +     KA+K MDG
Sbjct: 471 KVNGVPQ----YAFLQYCDIASVCKAIKKMDG 498



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 50  KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
           +E S + R R++ R+R  +       R R    S S        S G+S S A      S
Sbjct: 693 REYSYRQRERERERERFESDRDRDHER-RPIERSQSPVHLRRPQSPGASPSQAERLPSDS 751

Query: 110 ST---SRSSSSSSSSGSPSPSR----------RRHDNRRRSRSKSKPPKRDEKERK 152
                SRSS  S S  S SP R          R   N +  + ++  P+R E+ER+
Sbjct: 752 ERRLYSRSSDRSGSCSSLSPPRYEKLDKSRLERYTKNEKTDKERTFDPERVERERR 807



 Score = 32.7 bits (73), Expect = 0.41
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT----------RKRRSA 68
            +  +T    P      S  + K   ++ G+ ++   KD G DK            K+ + 
Sbjct: 2010 RPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRDRKDAGTDKNPPETAPVEVVEKKPAP 2069

Query: 69   SSGSSSTRSRS--SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
               S S R RS  S  +   S++     +  S   A++++G   +   + S   S SP  
Sbjct: 2070 EKNSKSKRGRSRNSRLAVDKSASLKNVDAAVSPRGAAAQAGERESGVVAVSPEKSESP-- 2127

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKR----RSPSPKPTKV 163
               + ++   S+ KS P   D++  K       PSP+ T++
Sbjct: 2128 ---QKEDGLSSQLKSDPVDPDKEPEKEDVSASGPSPEATQL 2165



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 265 RSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSSNSS 304
           RSP   + R++SP+R  S   R +RSP     RSRSSS+ S
Sbjct: 243 RSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDS 283



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 21   SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80
            ++ R   P K + R+DE+ ++ +K+   T +  E   G    R +++A+ G         
Sbjct: 1946 TTPRRGRPPKTRRRADEEEENEAKEPAETLKPPE---GWRSPRSQKTAAGG--------- 1993

Query: 81   STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
                 G          ++   A++  G     + SS    +        +  +R+ + + 
Sbjct: 1994 --GPQGKKGKNEPKVDATRPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRDRKDAGTD 2051

Query: 141  SKPPKRDEKERKRRSPSP-KPTKVHIGR 167
              PP+    E   + P+P K +K   GR
Sbjct: 2052 KNPPETAPVEVVEKKPAPEKNSKSKRGR 2079


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 37/281 (13%)

Query: 20  KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRS 79
           +  +R+ SP K +D S  +S  +++D+     S   ++ RD +R R   S   +  RSRS
Sbjct: 423 RDRSRSRSPNKARDCSRSRSPYKARDR---SRSRSPNKARDHSRSR---SPNKARDRSRS 476

Query: 80  SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS------SGSPSPSRRRHD- 132
            S S     +  GS S       S         R S SSS       S SPS  R+R   
Sbjct: 477 RSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQS 536

Query: 133 ---NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
              N+ R RS+S+ P  + + R+ RSPS +  +    R  R+ +K+   E   +    + 
Sbjct: 537 RSPNKERDRSQSRSPSEEREHRQSRSPSKERDR----RRWRSPSKER--ERRQSRSSSEE 590

Query: 190 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRR 249
            D    R  P+   GY+     + ++A    +         Q  T++           + 
Sbjct: 591 RDHSRSR-SPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTSS-----------KE 638

Query: 250 FSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290
             P +  +P  P W+RSP R    S++   R+P +  S SP
Sbjct: 639 SDPSQSTVPRSPDWKRSPTRTSSLSQN---RTPSKTSSHSP 676



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 82/325 (25%), Positives = 126/325 (38%), Gaps = 37/325 (11%)

Query: 14  VKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK-----DRGRDKTRK---- 64
           VK  N+ +STR+   +  + RS  +S+  S+ +  ++  S        R R +TRK    
Sbjct: 266 VKSYNQ-ASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILS 324

Query: 65  -------RRSASSGSSSTRSRSS----STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR 113
                   RS S G S  +SR+     S + S + +   S S S SSS       SS+ R
Sbjct: 325 QMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPR 384

Query: 114 SSSSSSSSGSPSP----SRRRHDNRRRSRSKSKPPKRDEKERKRRSP----------SPK 159
             S  S SGSP+     SR R  N+ R RS+S+ P +     + RSP          SP 
Sbjct: 385 KESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPY 444

Query: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP-DEAEK 218
             +      + N  +DH         + +       +   H   G    E ++    +  
Sbjct: 445 KARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPS 504

Query: 219 ALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPR 278
             +     +   +E       +P      R+   P +          S  R  R+SRSP 
Sbjct: 505 KERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPS 564

Query: 279 RRSPVRRRSRSPGRRRHRSRSSSNS 303
           +    RRR RSP + R R +S S+S
Sbjct: 565 KERD-RRRWRSPSKERERRQSRSSS 588



 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 86/331 (25%), Positives = 129/331 (38%), Gaps = 57/331 (17%)

Query: 4   SGVKKKSLLGVKENN-KKSSTRAPSPTKRKDRSD--EKSKDRSKDKGATKESSEKDR-GR 59
           SG +K++   V+ ++ K++ +RA S T++   S     S+ RS  KG ++  S   R GR
Sbjct: 292 SGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGR 351

Query: 60  DKT-----RKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSR 113
                    K RS S   SS++ R    SSS    S  S SGS +     SRS S + +R
Sbjct: 352 SHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKAR 411

Query: 114 SSSSSSS-------SGSPSPSRRRHDNRRRS------RSKSKPPKRDEKERKRRSP---- 156
             S S S       S S SP++ R  +R RS      RS+S+ P +     + RSP    
Sbjct: 412 DRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKAR 471

Query: 157 ------SPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEF 210
                 SP   + H    + +  +DH           +    P +      S+  +    
Sbjct: 472 DRSRSRSPSKERDHSQLGSPSKERDH-----------RRSRSPSKERQCRQSRSSSKERD 520

Query: 211 ENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRM 270
                +    +     +   +E   +   +P      R+   P            S  R 
Sbjct: 521 HRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSP------------SKERD 568

Query: 271 RRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
           RRR RSP +    RR+SRS    R  SRS S
Sbjct: 569 RRRWRSPSKERE-RRQSRSSSEERDHSRSRS 598



 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK-----DRGRDKTRKRRSASSG 71
           + ++   R+ SP+K + R   +S ++ +D+  ++  SE+      R   K R RR   S 
Sbjct: 516 SKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSP 575

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
           S     R S +SS            S S S + +SG S    SS   + S S +PS+  +
Sbjct: 576 SKERERRQSRSSSE-------ERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGN 628

Query: 132 DNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVT 173
            ++ R+ SK   P +       RSP  K +      L++N T
Sbjct: 629 HSQSRTSSKESDPSQSTVP---RSPDWKRSPTRTSSLSQNRT 667



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 80/318 (25%), Positives = 110/318 (34%), Gaps = 57/318 (17%)

Query: 4   SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKT 62
           SG+ + S L V  +  K  T    P+K K  +   S  R  K  G     S +       
Sbjct: 202 SGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTE 261

Query: 63  RKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSS-ASSRSGSSSTSRSSSSSSS- 120
              R  S   +STRSR  S S S S   + S S   + S   S S   + SR+ S +   
Sbjct: 262 MSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKG 321

Query: 121 --SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
             S     S+ R  ++ +S+++S+ P+R       R+PS                     
Sbjct: 322 ILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSK-------------------- 361

Query: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 238
                           ER H H        +        K       G  + Q   + + 
Sbjct: 362 ----------------ERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSR 405

Query: 239 LAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMR--RRSRSP-------RRRSPVR----R 285
                R   R  SP +          RSP + R   RSRSP       R RSP +     
Sbjct: 406 SPNKARDRSRSRSPYKAR---DRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHS 462

Query: 286 RSRSPGRRRHRSRSSSNS 303
           RSRSP + R RSRS S S
Sbjct: 463 RSRSPNKARDRSRSRSPS 480



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 69/313 (22%), Positives = 119/313 (38%), Gaps = 35/313 (11%)

Query: 23  TRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGS---------S 73
           +R  +P +R  RS ++S  R+   G  +    +     + R   S   GS         +
Sbjct: 119 SRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRT 178

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS-------SSSSSSSGSPSP 126
           S R RS S   + S  S     GS    +S  + + ST++        S   S + SPS 
Sbjct: 179 SNRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSS 238

Query: 127 SRRRHDNRRR---SRSKSKPP--------------KRDEKERKRRSPSPKPTKVHIGRLT 169
           SR+     +    SR KS  P               R   +   +S SP+ ++    + T
Sbjct: 239 SRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRT 298

Query: 170 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPH-LSKGYAYVEFENPDEAEKALKHMDGGQI 228
            +  + H  +   +  + +     + +M  H  S+ ++  + +N     +  +  +  + 
Sbjct: 299 HSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRN 358

Query: 229 DGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSR 288
             +E + +   +       R  S PR+          +  R   RSRSP +    R RSR
Sbjct: 359 PSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARD-RSRSR 417

Query: 289 SPGRRRHRSRSSS 301
           SP + R RSRS S
Sbjct: 418 SPYKARDRSRSRS 430



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 2/148 (1%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
           K ++K S + APS +       +        K AT   S        +R    + S S S
Sbjct: 5   KRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKS 64

Query: 75  TRSRSSSTSSSG--SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
           T+S S+  + S   SS S   S   + S  S+ + +S  S++S         + SR R  
Sbjct: 65  TKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTP 124

Query: 133 NRRRSRSKSKPPKRDEKERKRRSPSPKP 160
            RR SRS  + P R     + R+   +P
Sbjct: 125 GRRGSRSSKRSPSRASTPGRIRTHGARP 152



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 78/338 (23%), Positives = 129/338 (38%), Gaps = 40/338 (11%)

Query: 4   SGVKKKSLLGVKENNKKSSTRAPSPTKR-KDRSDEKSKDRSKDKGATKESSEKDRGRDKT 62
           S    +SL+  K    ++S  +PS +K  K  S +++        +   S  +   R  T
Sbjct: 37  SATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVST 96

Query: 63  RKRRSASSGSSSTR--------SRSSSTSSSGSSTSTGSSSGSSSSSA----SSRSGSSS 110
             R S +S +S  R        SR  +    GS +S  S S +S+        +R G +S
Sbjct: 97  DTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMAS 156

Query: 111 TSRS-SSSSSSSGSPSPSRRRHDNRRRSRSKS--------KPPKRDEKERKRR---SPS- 157
             R+ +S    S   S  R R  NR RS S+         +PP      R      +PS 
Sbjct: 157 RVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPST 216

Query: 158 ---PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS---KGYAYVEFE 211
                PT +     + N +     ++  +YG++ +           +S   K Y      
Sbjct: 217 AKCQTPTGIPSKEKSDNPSPSSSRKV-KSYGQMIIPSREKSYSPTEMSSRVKSYNQASTR 275

Query: 212 NPDEAEKALKHMDGGQIDGQEITATAVLA-PWPRPPPRRFSPPRRMLPPPPMWRRSPPRM 270
           +  ++    +     +   Q+ T + V +  W R   R  S  R+ +    M R S  R 
Sbjct: 276 SRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGI-LSQMGRHSQSRS 334

Query: 271 RRRSRSPRR-RSPVRRR----SRSPGRRRHRSRSSSNS 303
             + +S  + R+P R R    SR+P + R  S S S+S
Sbjct: 335 HSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSS 372



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR-SASSGSSST 75
           + +K+ +R+ +P+K  + S  ++  +  D   +      D  R  TR    S +   S T
Sbjct: 612 SKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKT 671

Query: 76  RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
            S S ST  SG  T    S   S + A++   +    RSSSSSS
Sbjct: 672 SSHSPSTFPSGGQTL---SQDDSQADATTSKATLPGERSSSSSS 712



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSS 81
           ST++ +P    +RS   +K  +        SS K      T KR  ++  SS +R RS +
Sbjct: 34  STKSATP----NRSLVPTKPATSRNSVMSPSSSKSTKSTST-KRAPSNRPSSRSRVRSKA 88

Query: 82  TSSSGSSTSTGSSSGSSSSSAS--SRSGSSST--------SRSSSSSSSSGSPSPSRRRH 131
            + S  ST T +S  S +S      R G+ S         SRSS  S S  S     R H
Sbjct: 89  RTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTH 148

Query: 132 DNRRRSRSKSKPPKRDEKERKRRS 155
             R    S+ + P   +K  + +S
Sbjct: 149 GARPGMASRVRTPTSQQKGSRGKS 172



 Score = 37.0 bits (84), Expect = 0.022
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 21  SSTRAPSPTKRKDRSDEKSKD--RSKDKGATKES--SEKDRGRDKTRKRRSASSGSSSTR 76
           S  RA S  K   RS   SK+   S+ + ++KES  S+    R    KR    + S S  
Sbjct: 606 SRPRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQN 665

Query: 77  SRSSSTSSSGSST--STGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
              S TSS   ST  S G +     S A + +  ++     SSSSSS
Sbjct: 666 RTPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKATLPGERSSSSSS 712



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 18/135 (13%)

Query: 17  NNKKSSTRAPSPTKR------KDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS 70
           + ++  +R+ SP K+      +  S EK+  RS+       S E +  + +T  + S  S
Sbjct: 588 SEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSR-----TPSKEGNHSQSRTSSKESDPS 642

Query: 71  GSSSTRS---RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
            S+  RS   + S T +S  S +   S  SS S ++  SG  + S+  S + +    + S
Sbjct: 643 QSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPSGGQTLSQDDSQADA----TTS 698

Query: 128 RRRHDNRRRSRSKSK 142
           +      R S S SK
Sbjct: 699 KATLPGERSSSSSSK 713



 Score = 32.7 bits (73), Expect = 0.41
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST-------SRSSSSSSSSGSPSP 126
           S+  RSS  S S + + +   +      AS +S  S+T       ++ ++S +S  SPS 
Sbjct: 2   SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSS 61

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170
           S+       +    ++P  R     K R+PS   T     + ++
Sbjct: 62  SKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASK 105


>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 3 [Homo sapiens]
          Length = 568

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 10/109 (9%)

Query: 64  KRRSASSGSSSTRS--RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
           +R+   +G    RS   SSS+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSS+
Sbjct: 132 RRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 191

Query: 122 GSPSPSRRRHDNR-------RRSRSKSKPPKRD-EKERKRRSPSPKPTK 162
               P +   +++       R  +S  K P RD  K  K  S  PK  K
Sbjct: 192 SFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK 240



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 22/116 (18%)

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
           S+SS SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S +S +            PS 
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSK 209

Query: 127 SRRRH---------DNRRRSRSKSKPPKRDE-------------KERKRRSPSPKP 160
             R H         D+ + S+  SK PK ++             KE K  S  PKP
Sbjct: 210 DSREHKSAFKEPSRDHNKSSKESSKKPKENKPLKEEKIVPKMAFKEPKPMSKEPKP 265



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 28/78 (35%), Positives = 36/78 (46%)

Query: 99  SSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
           +SS+SS S SSS+S SSSSSSSS S S S     +   S S S    +  K  K     P
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKP 207

Query: 159 KPTKVHIGRLTRNVTKDH 176
                      +  ++DH
Sbjct: 208 SKDSREHKSAFKEPSRDH 225



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 17/140 (12%)

Query: 27  SPTKRKDRSDEKSKDRSKDKGATKE----------------SSEKDRGRDKTRKRRSASS 70
           +P+KR   SD +     K K ++ E                S++K + +DK+  +     
Sbjct: 280 APSKRPPISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVK 339

Query: 71  GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
             S T  +  ST          + S     + SS+S S   S +SSSSSSS S +PS+ R
Sbjct: 340 IESETSEKKKSTLPPFDDIVDPNDS-DVEENISSKSDSEQPSPASSSSSSSSSFTPSQTR 398

Query: 131 HDNRRRSRSKSKPPKRDEKE 150
                RS  K      +E+E
Sbjct: 399 QQGPLRSIMKDLHSDDNEEE 418



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 39/159 (24%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 2   DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK-GATKESSEKDRGRD 60
           +LS  K+K      E   KS + AP          ++ KD+S  K G  K  SE    + 
Sbjct: 292 ELSAKKRKK--SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKK 349

Query: 61  KTRKRRS--ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
            T            S      SS S S   +   SSS SSSS   S++      RS    
Sbjct: 350 STLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKD 409

Query: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
             S          ++        +P  R     +R S S
Sbjct: 410 LHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLS 448


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 84/300 (28%), Positives = 117/300 (39%), Gaps = 31/300 (10%)

Query: 15  KENNKKSSTRAPSPTKRKD---RSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSG 71
           + ++ +SS+R+ S ++R     RS   ++ RS+    ++  S +   R ++R RR +  G
Sbjct: 388 RTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRR-YSRSRSRGRRHSGGG 446

Query: 72  SSSTRSRSSSTSSSGS-STSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
           S      S S +  G       S S S S     R G      SSS S SS S SPSR R
Sbjct: 447 SRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSR 506

Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF--------S 182
              R RS S S    R     + +SPSP P +    +LTR      + E           
Sbjct: 507 SLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAR---EKLTRPAASPAVGEKLKKTEPAAGK 563

Query: 183 TYGKIKMIDMPVERMHPHLSKGY-AYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 241
             G  K    P E++   + K      + +     EK ++     Q    E+ A A    
Sbjct: 564 ETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMA---- 619

Query: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
                  R     R       W R   +  R+SRSP   SP   R  S  RRR RSRS S
Sbjct: 620 ----RKIRMKERERREKEREEWER---QYSRQSRSP---SPRYSREYSSSRRRSRSRSRS 669



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 74/296 (25%), Positives = 117/296 (39%), Gaps = 38/296 (12%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTK---RKDRSDEKSKDRSKDKGATKESSEKDR------ 57
           ++K L G ++ +  S  R  SPT    ++  S+  S+ RS+ +  T    EK        
Sbjct: 275 REKRLRG-RKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFG 333

Query: 58  GRDKTRKRRSASSGSS--STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSS 115
           G D+     +A++ +S  +T    +     G +    +S+   SSS+SS S +S TS S 
Sbjct: 334 GSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSR 393

Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKD 175
           SSS SS         + + R +RS+S+   R     +R S S    + H G  +R+  + 
Sbjct: 394 SSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHR- 452

Query: 176 HIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
                +S     +    P  R       G  Y          + L+H           ++
Sbjct: 453 -----YSRSPARRGGYGPRRRSRSRSHSGDRY------RRGGRGLRHH----------SS 491

Query: 236 TAVLAPWPRPPPRRFSPPR-RMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290
           +   + W   P R  S  R R   P P   RS  R R +S SP   SP R +   P
Sbjct: 492 SRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSP---SPAREKLTRP 544



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 64/259 (24%), Positives = 89/259 (34%), Gaps = 50/259 (19%)

Query: 65  RRSASSGSSSTRSRSSSTSSSGSS-----TSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
           +RS S  SS +RSRS S +          TS G S   ++++A++ + S  T+    +  
Sbjct: 301 KRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPP 360

Query: 120 SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
             G P+P R     RRRS S S           R S          G   R+    H   
Sbjct: 361 QPGGPAPGRNA-SARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGR--HARS 417

Query: 180 IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 239
              ++ + +       R                     +  +H  GG  DG         
Sbjct: 418 RSRSWSRSRSRSRRYSRSR------------------SRGRRHSGGGSRDGHR------- 452

Query: 240 APWPRPPPRR--FSPPRRMLPPP---PMWRRSPPRMRRRSRS----------PRRRSPVR 284
             + R P RR  + P RR          +RR    +R  S S           R RS  R
Sbjct: 453 --YSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTR 510

Query: 285 RRSRSPGRRRHRSRSSSNS 303
            RS SP   + RSRS S S
Sbjct: 511 SRSHSPSPSQSRSRSRSRS 529



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 78/332 (23%), Positives = 110/332 (33%), Gaps = 76/332 (22%)

Query: 14  VKENNKKSST--RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR------ 65
           V + NK+++T   A     R  R D++  +  K   A +E      GR   R+R      
Sbjct: 218 VADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREK 277

Query: 66  ------------------------RSASSGSSSTRSRSSSTSSSGSS-----TSTGSSSG 96
                                   RS S  SS +RSRS S +          TS G S  
Sbjct: 278 RLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDE 337

Query: 97  SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSP 156
            ++++A++ + S  T+    +    G P+P R     RRRS S S           R S 
Sbjct: 338 EAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNA-SARRRSSSSSSSSSASRTSSSRSSS 396

Query: 157 SPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEA 216
                    G   R  +  H      ++ + +       R                    
Sbjct: 397 RSSSRSRRGGGYYR--SGRHARSRSRSWSRSRSRSRRYSR------------------SR 436

Query: 217 EKALKHMDGGQIDGQEITATAVLAPWPRPPPRR--FSPPRRMLPPPPMWRRSPPRMRRRS 274
            +  +H  GG  DG           + R P RR  + P RR          S  R RR  
Sbjct: 437 SRGRRHSGGGSRDGHR---------YSRSPARRGGYGPRRRSRSR----SHSGDRYRRGG 483

Query: 275 RSPRRRSPVRRRSR---SPGRRRHRSRSSSNS 303
           R  R  S  R RS    SP R R  +RS S+S
Sbjct: 484 RGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHS 515



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 113 RSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPP 144
           R  S  S S SP  SR    +RRRSRS+S+ P
Sbjct: 639 RQYSRQSRSPSPRYSREYSSSRRRSRSRSRSP 670


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 224
           +  LT   + D +  +F  YG++  + +P E  H    +G+A+V F +  +A+ A   MD
Sbjct: 18  VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP-HTKAPRGFAFVRFHDRRDAQDAEAAMD 76

Query: 225 GGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 284
           G ++DG+E+            P  R   PR         RRS     RRSRSPRRR   R
Sbjct: 77  GAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRS-RSYGRRSRSPRRRH--R 133

Query: 285 RRSRSPGRRRHRSRSSSNSSR 305
            RSR P   R RSRS    SR
Sbjct: 134 SRSRGPSCSRSRSRSRYRGSR 154



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 57/151 (37%), Positives = 77/151 (50%), Gaps = 16/151 (10%)

Query: 20  KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTRKRRS-------AS 69
           +S +R PS ++ + RS  +    S+   +    S     R    ++R R S       +S
Sbjct: 133 RSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSS 192

Query: 70  SGSSSTR----SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
           SG S++R      S S S SGSSTS+ S+S S SSSA  RS SSS SRS S S SS    
Sbjct: 193 SGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSAR-RSKSSSVSRSRSRSRSSSMTR 251

Query: 126 PSRRRHDNRRRSRSKSK-PPKRDEKERKRRS 155
              R    + +SRS+SK PPK  E+E +  S
Sbjct: 252 SPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 13  GVKENNKKSSTRAPSPTKR-----KDRSDEKSKDRSKDKGATKESSEKDRGR-DKTRKRR 66
           G    ++    R+ SP +R     +  S  +S+ RS+ +G+    S   R    ++R  R
Sbjct: 113 GYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSR 172

Query: 67  SASSGSSSTRSR--SSSTSSSGSSTST----GSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           S  S S    SR   S  SSSG S S      SS   S S +S+ S S+STS+SSS+  S
Sbjct: 173 SPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRS 232

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
             S S SR R  +R  S ++S PP+  +++ K RS S +P K
Sbjct: 233 KSS-SVSRSRSRSRSSSMTRS-PPRVSKRKSKSRSRSKRPPK 272



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 63/258 (24%), Positives = 83/258 (32%), Gaps = 47/258 (18%)

Query: 33  DRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTG 92
           DR D +  + + D GA  +  E      +  +R    S     R RS        S S G
Sbjct: 64  DRRDAQDAEAAMD-GAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYG 122

Query: 93  SSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERK 152
             S S      SRS   S SRS S S   GS           R SRS   P  R    R 
Sbjct: 123 RRSRSPRRRHRSRSRGPSCSRSRSRSRYRGS-----------RYSRS---PYSRSPYSRS 168

Query: 153 RRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFEN 212
           R S SP                         Y + +  +      H + S GY+   +  
Sbjct: 169 RYSRSP-------------------------YSRSRYRESRYGGSH-YSSSGYSNSRY-- 200

Query: 213 PDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR 272
                 +  H   G        +T+  +   R      S  R       M  RSPPR+ +
Sbjct: 201 -SRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSM-TRSPPRVSK 258

Query: 273 RSRSPRRRSPVRRRSRSP 290
           R    R RS  +R  +SP
Sbjct: 259 RKSKSRSRS--KRPPKSP 274


>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
           sapiens]
          Length = 434

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 62/175 (35%), Positives = 78/175 (44%), Gaps = 20/175 (11%)

Query: 2   DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKS-KDRSKDKGATK-ESSEKDRGR 59
           D  G K +S    KE  +  S    S   +K +S+E + K+ S DKG  +  SSE    R
Sbjct: 55  DNEGRKHRSRSRSKEGRRHESKDKSS---KKHKSEEHNDKEHSSDKGRERLNSSENGEDR 111

Query: 60  DKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS----SSTSRSS 115
            K RK R +S G S +RSRS        S     S   S     SRS S     S SRS 
Sbjct: 112 HK-RKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170

Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER----------KRRSPSPKP 160
                  S S SR RH +R RSRS+++   RD K+R            R+PSP P
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPP 225



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 11/169 (6%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSS- 73
           K +N+    R+ S +K   R +  SKD+S  K  ++E ++K+   DK R+R ++S     
Sbjct: 53  KSDNEGRKHRSRSRSKEGRRHE--SKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGED 110

Query: 74  --------STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
                   S+R RS S S S        S     S + SR    S SRS     S     
Sbjct: 111 RHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170

Query: 126 PSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
             +RR  +R RSRS+ +   R     + RS   K       R +R++++
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSR 219



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 3/158 (1%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK-GATKESSEKDRGRDKTRKRRSASSGSS 73
           K +  +S +R+    ++ D    K + RS+ K G   ES +K   + K+ +       S 
Sbjct: 37  KHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSD 96

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
             R R +S S +G          SS   + SRS S      S S     S S SR R  +
Sbjct: 97  KGRERLNS-SENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKS 155

Query: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRN 171
           R RSR + K   R  +ERKRR  S   ++      TR+
Sbjct: 156 RSRSRERKKSRSR-SRERKRRIRSRSRSRSRHRHRTRS 192



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 51/166 (30%), Positives = 70/166 (42%), Gaps = 29/166 (17%)

Query: 25  APSPTKRKDRSDEK-SKDRSKDKG---------ATKESSEKDRGRDKTRKRRSASSGSSS 74
           A S T+R   + EK S DR K K          A+K    + R R + RKR+S + G   
Sbjct: 2   AASDTERDGLAPEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH 61

Query: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG------------ 122
            RSRS S       +   SS    S   + +  SS   R   +SS +G            
Sbjct: 62  -RSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSS 120

Query: 123 -----SPSPSR-RRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
                S S SR RRH +R R R KS+   R+ K+ + RS   K ++
Sbjct: 121 RGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSR 166



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)

Query: 15  KENNKKSSTRAPSPTKR---KDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSG 71
           K +  +S +R+ S  +R   + R  +KS+ RS+++       +K R R + RK+  + S 
Sbjct: 118 KSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRER-------KKSRSRSRERKKSRSRSR 170

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
               R RS S S S     T S S + S S   +       R S S S + SP P R R+
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRN 230

Query: 132 DNRRRSRSKSKPPKRDEKERKRR 154
                  + ++  +R +K +++R
Sbjct: 231 TAMDAQEALARRLERAKKLQEQR 253



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 57/211 (27%), Positives = 80/211 (37%), Gaps = 22/211 (10%)

Query: 99  SSSASSRSG----SSSTSRSSSSSSSSGSPSP-SRRRHDNRRRSRSKSKPPKRDEKERKR 153
           ++S + R G     +S  R      S  S SP + + H +R RSRS+ +  K D + RK 
Sbjct: 2   AASDTERDGLAPEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH 61

Query: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
           RS S        GR  R+ +KD          K        E      S         + 
Sbjct: 62  RSRSRSKE----GR--RHESKD----------KSSKKHKSEEHNDKEHSSDKGRERLNSS 105

Query: 214 DEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPR-RMLPPPPMWRRSPPRMRR 272
           +  E   K  +     G+  + +       R   R     R R         RS  R + 
Sbjct: 106 ENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKS 165

Query: 273 RSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
           RSRS  R+  +R RSRS  R RHR+RS S +
Sbjct: 166 RSRSRERKRRIRSRSRSRSRHRHRTRSRSRT 196



 Score = 34.7 bits (78), Expect = 0.11
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
           RS  R R R R  R RS  R++SRS  R R +SRS S   +
Sbjct: 123 RSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERK 163



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/59 (32%), Positives = 23/59 (38%)

Query: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
           P + SP R           SP   +      R RS  R+R      R+HRSRS S   R
Sbjct: 13  PEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGR 71


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.305    0.119    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,844,294
Number of Sequences: 37866
Number of extensions: 856470
Number of successful extensions: 43621
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 1181
Number of HSP's that attempted gapping in prelim test: 11828
Number of HSP's gapped (non-prelim): 17583
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press