Guide to the Human Genome
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Name: ATPBD4 Sequence: fasta or formatted (267aa) NCBI GI: 18087809
Description:

ATP binding domain 4 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {165aa} ATP binding domain 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         20           2
 C cysteine            2.2          6           1
 D aspartate           6.4         17           1
 E glutamate           8.2         22           2
 F phenylalanine       1.9          5           1
 G glycine             5.6         15           2
 H histidine           2.6          7           2
 I isoleucine          6.4         17           2
 K lysine              5.6         15           3
 L leucine            11.6         31           2
 M methionine          3.0          8           2
 N asparagine          3.7         10           1
 P proline             3.0          8           1
 Q glutamine           4.1         11           1
 R arginine            5.2         14           2
 S serine              6.0         16           2
 T threonine           3.0          8           1
 V valine              7.5         20           2
 W tryptophan          0.4          1           1
 Y tyrosine            6.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP binding domain 4 isoform 1 
ATPBD4                0.375   ATP binding domain 4 isoform 2 
UTP20                 0.016   down-regulated in metastasis 
LOC653877             0.016   PREDICTED: similar to Temporarily Assigned Gene name...
KIF5A                 0.014   kinesin family member 5A 
KIF5C                 0.014   kinesin family member 5C 
FSTL5                 0.012   follistatin-like 5 isoform a 
FSTL5                 0.010   follistatin-like 5 isoform c 
FSTL5                 0.010   follistatin-like 5 isoform b 
LOC100130644          0.010   PREDICTED: similar to hCG2036814 
LOC100130644          0.010   PREDICTED: similar to hCG2036814 
LOC100288276          0.010   PREDICTED: hypothetical protein XP_002342504 
LUZP1                 0.010   leucine zipper protein 1 
LUZP1                 0.010   leucine zipper protein 1 
UGDH                  0.008   UDP-glucose dehydrogenase 
FAM98B                0.008   family with sequence similarity 98, member B isofor...
FAM98B                0.008   family with sequence similarity 98, member B isofor...
ZNF280D               0.008   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.008   suppressor of hairy wing homolog 4 isoform 3 
ZNF280D               0.008   suppressor of hairy wing homolog 4 isoform 1 
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
SPTLC1                0.006   serine palmitoyltransferase subunit 1 isoform a [Homo...
CCDC150               0.006   coiled-coil domain containing 150 
ATAD5                 0.006   ATPase family, AAA domain containing 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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