Guide to the Human Genome
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Name: MAPK13 Sequence: fasta or formatted (365aa) NCBI GI: 4506085
Description:

mitogen-activated protein kinase 13

Referenced in:

MAP Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         24           2
 C cysteine            0.8          3           1
 D aspartate           6.0         22           2
 E glutamate           6.8         25           3
 F phenylalanine       4.9         18           2
 G glycine             4.9         18           1
 H histidine           2.7         10           1
 I isoleucine          4.7         17           1
 K lysine              8.8         32           2
 L leucine            10.4         38           4
 M methionine          3.6         13           1
 N asparagine          2.2          8           1
 P proline             4.7         17           1
 Q glutamine           5.2         19           2
 R arginine            4.9         18           3
 S serine              5.8         21           2
 T threonine           5.2         19           1
 V valine              6.3         23           2
 W tryptophan          1.4          5           1
 Y tyrosine            4.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitogen-activated protein kinase 13 
MAPK12                0.640   mitogen-activated protein kinase 12 
MAPK14                0.596   mitogen-activated protein kinase 14 isoform 2 
MAPK11                0.589   mitogen-activated protein kinase 11 
MAPK14                0.585   mitogen-activated protein kinase 14 isoform 1 
MAPK14                0.491   mitogen-activated protein kinase 14 isoform 3 
MAPK14                0.457   mitogen-activated protein kinase 14 isoform 4 
MAPK9                 0.424   mitogen-activated protein kinase 9 isoform JNK2 beta...
MAPK9                 0.424   mitogen-activated protein kinase 9 isoform JNK2 beta...
MAPK9                 0.417   mitogen-activated protein kinase 9 isoform JNK2 alph...
MAPK9                 0.417   mitogen-activated protein kinase 9 isoform JNK2 alph...
MAPK8                 0.415   mitogen-activated protein kinase 8 isoform JNK1 alph...
MAPK8                 0.415   mitogen-activated protein kinase 8 isoform JNK1 alpha...
MAPK10                0.415   mitogen-activated protein kinase 10 isoform 1 
MAPK10                0.415   mitogen-activated protein kinase 10 isoform 2 
MAPK10                0.415   mitogen-activated protein kinase 10 isoform 3 
MAPK8                 0.414   mitogen-activated protein kinase 8 isoform JNK1 beta...
MAPK8                 0.414   mitogen-activated protein kinase 8 isoform JNK1 beta...
MAPK3                 0.383   mitogen-activated protein kinase 3 isoform 1 
MAPK1                 0.377   mitogen-activated protein kinase 1 
MAPK1                 0.377   mitogen-activated protein kinase 1 
MAPK7                 0.359   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.359   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.359   mitogen-activated protein kinase 7 isoform 1 
MAPK3                 0.356   mitogen-activated protein kinase 3 isoform 2 
MAPK3                 0.320   mitogen-activated protein kinase 3 isoform 3 
MAPK9                 0.300   mitogen-activated protein kinase 9 isoform JNK2 gam...
MAPK15                0.285   mitogen-activated protein kinase 15 
MAPK10                0.282   mitogen-activated protein kinase 10 isoform 4 
MAPK7                 0.273   mitogen-activated protein kinase 7 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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